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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJYJ] human gut metagenome; human gut
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182814400
OJYJ01001100
[OJYJ] human gut metagenome; human gut
22
97
+
Trp
CCA
[ENA]
¢þ
>WENV182814417
OJYJ01002599
[OJYJ] human gut metagenome; human gut
133
51
-
Tyr
GTA
[ENA]
¢þ
>WENV182814394
OJYJ01000796
[OJYJ] human gut metagenome; human gut
185
261
+
Met
CAT
[ENA]
¢þ
>WENV182814412
OJYJ01002013
[OJYJ] human gut metagenome; human gut
198
125
-
Gly
TCC
[ENA]
¢þ
>WENV182814403
OJYJ01001678
[OJYJ] human gut metagenome; human gut
252
336
+
Tyr
GTA
[ENA]
¢þ
>WENV182814404
OJYJ01001682
[OJYJ] human gut metagenome; human gut
256
331
+
Thr
TGT
[ENA]
¢þ
>WENV182814420
OJYJ01003781
[OJYJ] human gut metagenome; human gut
271
198
-
Arg
CCG
[ENA]
¢þ
>WENV182814411
OJYJ01002013
[OJYJ] human gut metagenome; human gut
276
202
-
Gly
GCC
[ENA]
¢þ
>WENV182814395
OJYJ01000796
[OJYJ] human gut metagenome; human gut
280
354
+
Gln
CTG
[ENA]
¢þ
>WENV182814416
OJYJ01002599
[OJYJ] human gut metagenome; human gut
290
215
-
Asp
GTC
[ENA]
¢þ
>WENV182814405
OJYJ01001911
[OJYJ] human gut metagenome; human gut
336
426
+
Ser
CGA
[ENA]
¢þ
>WENV182814419
OJYJ01003235
[OJYJ] human gut metagenome; human gut
351
279
-
Gly
TCC
[ENA]
¢þ
>WENV182814410
OJYJ01002013
[OJYJ] human gut metagenome; human gut
386
303
-
Leu
TAG
[ENA]
¢þ
>WENV182814415
OJYJ01002599
[OJYJ] human gut metagenome; human gut
402
327
-
fMet
CAT
[ENA]
¢þ
>WENV182814418
OJYJ01002952
[OJYJ] human gut metagenome; human gut
457
532
+
Trp
CCA
[ENA]
¢þ
>WENV182814409
OJYJ01002013
[OJYJ] human gut metagenome; human gut
472
397
-
Lys
TTT
[ENA]
¢þ
>WENV182814414
OJYJ01002599
[OJYJ] human gut metagenome; human gut
524
435
-
Ser
TGA
[ENA]
¢þ
>WENV182814359
OJYJ01000057
[OJYJ] human gut metagenome; human gut
532
624
+
Ser
GCT
[ENA]
¢þ
>WENV182814408
OJYJ01002013
[OJYJ] human gut metagenome; human gut
553
479
-
Gln
TTG
[ENA]
¢þ
>WENV182814413
OJYJ01002599
[OJYJ] human gut metagenome; human gut
609
536
-
Glu
TTC
[ENA]
¢þ
>WENV182814360
OJYJ01000057
[OJYJ] human gut metagenome; human gut
629
705
+
Arg
ACG
[ENA]
¢þ
>WENV182814407
OJYJ01002013
[OJYJ] human gut metagenome; human gut
634
559
-
His
GTG
[ENA]
¢þ
>WENV182814406
OJYJ01002013
[OJYJ] human gut metagenome; human gut
715
639
-
Arg
TCT
[ENA]
¢þ
>WENV182814398
OJYJ01001091
[OJYJ] human gut metagenome; human gut
851
927
+
Ile
GAT
[ENA]
¢þ
>WENV182814388
OJYJ01000410
[OJYJ] human gut metagenome; human gut
881
795
-
Leu
TAA
[ENA]
¢þ
>WENV182814401
OJYJ01001165
[OJYJ] human gut metagenome; human gut
928
838
-
Ser
GGA
[ENA]
¢þ
>WENV182814387
OJYJ01000410
[OJYJ] human gut metagenome; human gut
968
895
-
Cys
GCA
[ENA]
¢þ
>WENV182814399
OJYJ01001091
[OJYJ] human gut metagenome; human gut
1037
1112
+
Ala
TGC
[ENA]
¢þ
>WENV182814386
OJYJ01000410
[OJYJ] human gut metagenome; human gut
1084
1009
-
Gly
GCC
[ENA]
¢þ
>WENV182814402
OJYJ01001186
[OJYJ] human gut metagenome; human gut
1190
1100
-
Ser
GCT
[ENA]
¢þ
>WENV182814370
OJYJ01000215
[OJYJ] human gut metagenome; human gut
1253
1158
-
SeC
TCA
[ENA]
¢þ
>WENV182814377
OJYJ01000389
[OJYJ] human gut metagenome; human gut
1327
1402
+
Phe
GAA
[ENA]
¢þ
>WENV182814392
OJYJ01000622
[OJYJ] human gut metagenome; human gut
1637
1724
+
Ser
TGA
[ENA]
¢þ
>WENV182814368
OJYJ01000182
[OJYJ] human gut metagenome; human gut
1765
1690
-
Asn
GTT
[ENA]
¢þ
>WENV182814396
OJYJ01000803
[OJYJ] human gut metagenome; human gut
1776
1851
+
Thr
TGT
[ENA]
¢þ
>WENV182814376
OJYJ01000332
[OJYJ] human gut metagenome; human gut
1781
1854
+
Gly
CCC
[ENA]
¢þ
>WENV182814397
OJYJ01000803
[OJYJ] human gut metagenome; human gut
1860
1944
+
Tyr
GTA
[ENA]
¢þ
>WENV182814369
OJYJ01000207
[OJYJ] human gut metagenome; human gut
2043
2119
+
fMet
CAT
[ENA]
¢þ
>WENV182814393
OJYJ01000731
[OJYJ] human gut metagenome; human gut
2083
2007
-
Asp
GTC
[ENA]
¢þ
>WENV182814373
OJYJ01000261
[OJYJ] human gut metagenome; human gut
2132
2058
-
Arg
CCT
[ENA]
¢þ
>WENV182814352
OJYJ01000003
[OJYJ] human gut metagenome; human gut
2249
2174
-
Gly
GCC
[ENA]
¢þ
>WENV182814390
OJYJ01000496
[OJYJ] human gut metagenome; human gut
2281
2356
+
Lys
TTT
[ENA]
¢þ
>WENV182814367
OJYJ01000154
[OJYJ] human gut metagenome; human gut
2421
2346
-
Thr
CGT
[ENA]
¢þ
>WENV182814378
OJYJ01000400
[OJYJ] human gut metagenome; human gut
2794
2868
+
Val
TAC
[ENA]
¢þ
>WENV182814379
OJYJ01000400
[OJYJ] human gut metagenome; human gut
2873
2947
+
Lys
TTT
[ENA]
¢þ
>WENV182814389
OJYJ01000462
[OJYJ] human gut metagenome; human gut
2874
2785
-
Ser
CGA
[ENA]
¢þ
>WENV182814380
OJYJ01000400
[OJYJ] human gut metagenome; human gut
2962
3045
+
Leu
TAG
[ENA]
¢þ
>WENV182814381
OJYJ01000400
[OJYJ] human gut metagenome; human gut
3051
3126
+
Thr
TGT
[ENA]
¢þ
>WENV182814382
OJYJ01000400
[OJYJ] human gut metagenome; human gut
3131
3202
+
Gly
GCC
[ENA]
¢þ
>WENV182814383
OJYJ01000400
[OJYJ] human gut metagenome; human gut
3218
3303
+
Leu
TAA
[ENA]
¢þ
>WENV182814391
OJYJ01000520
[OJYJ] human gut metagenome; human gut
3242
3318
+
Pro
CGG
[ENA]
¢þ
>WENV182814384
OJYJ01000400
[OJYJ] human gut metagenome; human gut
3318
3391
+
Arg
ACG
[ENA]
¢þ
>WENV182814375
OJYJ01000318
[OJYJ] human gut metagenome; human gut
3450
3375
-
Lys
CTT
[ENA]
¢þ
>WENV182814385
OJYJ01000400
[OJYJ] human gut metagenome; human gut
3481
3554
+
Pro
TGG
[ENA]
¢þ
>WENV182814372
OJYJ01000239
[OJYJ] human gut metagenome; human gut
3839
3923
+
Leu
CAA
[ENA]
¢þ
>WENV182814374
OJYJ01000283
[OJYJ] human gut metagenome; human gut
4039
4115
+
Arg
TCT
[ENA]
¢þ
>WENV182814364
OJYJ01000113
[OJYJ] human gut metagenome; human gut
4203
4279
+
Val
GAC
[ENA]
¢þ
>WENV182814371
OJYJ01000235
[OJYJ] human gut metagenome; human gut
4908
4983
+
Asn
GTT
[ENA]
¢þ
>WENV182814363
OJYJ01000070
[OJYJ] human gut metagenome; human gut
6628
6704
+
Pro
GGG
[ENA]
¢þ
>WENV182814353
OJYJ01000019
[OJYJ] human gut metagenome; human gut
7188
7264
+
Arg
CCG
[ENA]
¢þ
>WENV182814354
OJYJ01000019
[OJYJ] human gut metagenome; human gut
7333
7408
+
His
GTG
[ENA]
¢þ
>WENV182814355
OJYJ01000019
[OJYJ] human gut metagenome; human gut
7430
7516
+
Leu
CAG
[ENA]
¢þ
>WENV182814356
OJYJ01000019
[OJYJ] human gut metagenome; human gut
7560
7636
+
Pro
TGG
[ENA]
¢þ
>WENV182814365
OJYJ01000118
[OJYJ] human gut metagenome; human gut
8922
8997
+
Ile2
CAT
[ENA]
¢þ
>WENV182814366
OJYJ01000120
[OJYJ] human gut metagenome; human gut
9684
9771
+
Ser
GGA
[ENA]
¢þ
>WENV182814362
OJYJ01000060
[OJYJ] human gut metagenome; human gut
10372
10297
-
Ala
GGC
[ENA]
¢þ
>WENV182814358
OJYJ01000042
[OJYJ] human gut metagenome; human gut
12452
12538
+
Leu
GAG
[ENA]
¢þ
>WENV182814361
OJYJ01000060
[OJYJ] human gut metagenome; human gut
13070
13145
+
Val
TAC
[ENA]
¢þ
>WENV182814357
OJYJ01000022
[OJYJ] human gut metagenome; human gut
13684
13608
-
fMet
CAT
[ENA]
¢þ
>WENV182814351
OJYJ01000003
[OJYJ] human gut metagenome; human gut
27707
27782
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK