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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJYM] human gut metagenome; human gut
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182814693
OJYM01002750
[OJYM] human gut metagenome; human gut
37
112
+
Phe
GAA
[ENA]
¢þ
>WENV182814696
OJYM01003489
[OJYM] human gut metagenome; human gut
99
172
+
Cys
GCA
[ENA]
¢þ
>WENV182814678
OJYM01000734
[OJYM] human gut metagenome; human gut
105
29
-
Pro
CGG
[ENA]
¢þ
>WENV182814698
OJYM01003733
[OJYM] human gut metagenome; human gut
125
50
-
Phe
GAA
[ENA]
¢þ
>WENV182814694
OJYM01002750
[OJYM] human gut metagenome; human gut
125
210
+
Leu
GAG
[ENA]
¢þ
>WENV182814668
OJYM01000229
[OJYM] human gut metagenome; human gut
139
64
-
His
GTG
[ENA]
¢þ
>WENV182814697
OJYM01003489
[OJYM] human gut metagenome; human gut
185
271
+
Leu
TAA
[ENA]
¢þ
>WENV182814699
OJYM01003744
[OJYM] human gut metagenome; human gut
195
270
+
Asn
GTT
[ENA]
¢þ
>WENV182814666
OJYM01000185
[OJYM] human gut metagenome; human gut
196
272
+
Met
CAT
[ENA]
¢þ
>WENV182814692
OJYM01002594
[OJYM] human gut metagenome; human gut
203
130
-
Gly
TCC
[ENA]
¢þ
>WENV182814667
OJYM01000229
[OJYM] human gut metagenome; human gut
274
198
-
Arg
CCG
[ENA]
¢þ
>WENV182814683
OJYM01002386
[OJYM] human gut metagenome; human gut
279
185
-
SeC
TCA
[ENA]
¢þ
>WENV182814691
OJYM01002594
[OJYM] human gut metagenome; human gut
283
209
-
Gly
GCC
[ENA]
¢þ
>WENV182814682
OJYM01001362
[OJYM] human gut metagenome; human gut
297
210
-
Ser
GGA
[ENA]
¢þ
>WENV182814701
OJYM01004034
[OJYM] human gut metagenome; human gut
344
269
-
Ile2
CAT
[ENA]
¢þ
>WENV182814700
OJYM01003789
[OJYM] human gut metagenome; human gut
368
455
+
Ser
TGA
[ENA]
¢þ
>WENV182814690
OJYM01002594
[OJYM] human gut metagenome; human gut
390
307
-
Leu
TAG
[ENA]
¢þ
>WENV182814672
OJYM01000421
[OJYM] human gut metagenome; human gut
426
512
+
Leu
CAG
[ENA]
¢þ
>WENV182814689
OJYM01002594
[OJYM] human gut metagenome; human gut
476
401
-
Lys
TTT
[ENA]
¢þ
>WENV182814684
OJYM01002392
[OJYM] human gut metagenome; human gut
514
586
+
Val
TAC
[ENA]
¢þ
>WENV182814695
OJYM01003270
[OJYM] human gut metagenome; human gut
528
444
-
Leu
CAA
[ENA]
¢þ
>WENV182814688
OJYM01002594
[OJYM] human gut metagenome; human gut
557
483
-
Gln
TTG
[ENA]
¢þ
>WENV182814685
OJYM01002392
[OJYM] human gut metagenome; human gut
609
681
+
Asp
GTC
[ENA]
¢þ
>WENV182814687
OJYM01002594
[OJYM] human gut metagenome; human gut
638
563
-
His
GTG
[ENA]
¢þ
>WENV182814681
OJYM01000945
[OJYM] human gut metagenome; human gut
716
632
-
Tyr
GTA
[ENA]
¢þ
>WENV182814686
OJYM01002594
[OJYM] human gut metagenome; human gut
719
643
-
Arg
TCT
[ENA]
¢þ
>WENV182814669
OJYM01000327
[OJYM] human gut metagenome; human gut
721
797
+
fMet
CAT
[ENA]
¢þ
>WENV182814671
OJYM01000358
[OJYM] human gut metagenome; human gut
774
699
-
Trp
CCA
[ENA]
¢þ
>WENV182814680
OJYM01000945
[OJYM] human gut metagenome; human gut
802
727
-
Thr
TGT
[ENA]
¢þ
>WENV182814679
OJYM01000924
[OJYM] human gut metagenome; human gut
826
916
+
Ser
CGA
[ENA]
¢þ
>WENV182814670
OJYM01000358
[OJYM] human gut metagenome; human gut
859
783
-
Asp
GTC
[ENA]
¢þ
>WENV182814663
OJYM01000048
[OJYM] human gut metagenome; human gut
862
937
+
Glu
TTC
[ENA]
¢þ
>WENV182814677
OJYM01000541
[OJYM] human gut metagenome; human gut
996
921
-
Pro
TGG
[ENA]
¢þ
>WENV182814673
OJYM01000432
[OJYM] human gut metagenome; human gut
999
1074
+
Phe
GAA
[ENA]
¢þ
>WENV182814676
OJYM01000541
[OJYM] human gut metagenome; human gut
1075
1000
-
Arg
ACG
[ENA]
¢þ
>WENV182814675
OJYM01000541
[OJYM] human gut metagenome; human gut
1178
1091
-
Leu
TAA
[ENA]
¢þ
>WENV182814674
OJYM01000541
[OJYM] human gut metagenome; human gut
1270
1194
-
Met
CAT
[ENA]
¢þ
>WENV182814664
OJYM01000136
[OJYM] human gut metagenome; human gut
1642
1717
+
Thr
CGT
[ENA]
¢þ
>WENV182814665
OJYM01000170
[OJYM] human gut metagenome; human gut
1852
1778
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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