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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJYP] human gut metagenome; human gut
HIT:
73 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182815210
OJYP01000227
[OJYP] human gut metagenome; human gut
57
147
+
Ser
GCT
[ENA]
¢þ
>WENV182815223
OJYP01000542
[OJYP] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182815173
OJYP01000017
[OJYP] human gut metagenome; human gut
62
137
+
Val
TAC
[ENA]
¢þ
>WENV182815233
OJYP01000708
[OJYP] human gut metagenome; human gut
66
139
+
Pro
TGG
[ENA]
¢þ
>WENV182815229
OJYP01000649
[OJYP] human gut metagenome; human gut
80
154
+
Met
CAT
[ENA]
¢þ
>WENV182815207
OJYP01000138
[OJYP] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV182815193
OJYP01000058
[OJYP] human gut metagenome; human gut
142
69
-
Gly
TCC
[ENA]
¢þ
>WENV182815185
OJYP01000029
[OJYP] human gut metagenome; human gut
144
217
+
Pro
TGG
[ENA]
¢þ
>WENV182815224
OJYP01000542
[OJYP] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182815234
OJYP01000708
[OJYP] human gut metagenome; human gut
152
226
+
Ala
TGC
[ENA]
¢þ
>WENV182815174
OJYP01000017
[OJYP] human gut metagenome; human gut
154
237
+
Tyr
GTA
[ENA]
¢þ
>WENV182815215
OJYP01000328
[OJYP] human gut metagenome; human gut
157
231
+
Phe
GAA
[ENA]
¢þ
>WENV182815230
OJYP01000649
[OJYP] human gut metagenome; human gut
181
254
+
Ile2
CAT
[ENA]
¢þ
>WENV182815192
OJYP01000058
[OJYP] human gut metagenome; human gut
235
160
-
His
GTG
[ENA]
¢þ
>WENV182815225
OJYP01000542
[OJYP] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182815216
OJYP01000328
[OJYP] human gut metagenome; human gut
239
314
+
Thr
TGT
[ENA]
¢þ
>WENV182815175
OJYP01000017
[OJYP] human gut metagenome; human gut
242
316
+
Gln
TTG
[ENA]
¢þ
>WENV182815235
OJYP01000708
[OJYP] human gut metagenome; human gut
248
323
+
Met
CAT
[ENA]
¢þ
>WENV182815231
OJYP01000649
[OJYP] human gut metagenome; human gut
263
354
+
Ser
TGA
[ENA]
¢þ
>WENV182815226
OJYP01000542
[OJYP] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182815217
OJYP01000328
[OJYP] human gut metagenome; human gut
319
402
+
Tyr
GTA
[ENA]
¢þ
>WENV182815176
OJYP01000017
[OJYP] human gut metagenome; human gut
320
393
+
Lys
TTT
[ENA]
¢þ
>WENV182815191
OJYP01000058
[OJYP] human gut metagenome; human gut
322
248
-
Phe
GAA
[ENA]
¢þ
>WENV182815236
OJYP01000708
[OJYP] human gut metagenome; human gut
342
417
+
Ile2
CAT
[ENA]
¢þ
>WENV182815232
OJYP01000649
[OJYP] human gut metagenome; human gut
361
436
+
Asp
GTC
[ENA]
¢þ
>WENV182815222
OJYP01000500
[OJYP] human gut metagenome; human gut
388
315
-
Thr
TGT
[ENA]
¢þ
>WENV182815227
OJYP01000542
[OJYP] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182815190
OJYP01000058
[OJYP] human gut metagenome; human gut
407
332
-
Asp
GTC
[ENA]
¢þ
>WENV182815218
OJYP01000328
[OJYP] human gut metagenome; human gut
411
484
+
Trp
CCA
[ENA]
¢þ
>WENV182815214
OJYP01000267
[OJYP] human gut metagenome; human gut
462
534
+
Ala
TGC
[ENA]
¢þ
>WENV182815211
OJYP01000238
[OJYP] human gut metagenome; human gut
476
552
+
Ile
GAT
[ENA]
¢þ
>WENV182815219
OJYP01000328
[OJYP] human gut metagenome; human gut
487
560
+
His
GTG
[ENA]
¢þ
>WENV182815189
OJYP01000058
[OJYP] human gut metagenome; human gut
495
422
-
fMet
CAT
[ENA]
¢þ
>WENV182815228
OJYP01000542
[OJYP] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182815220
OJYP01000328
[OJYP] human gut metagenome; human gut
571
642
+
Gln
TTG
[ENA]
¢þ
>WENV182815212
OJYP01000238
[OJYP] human gut metagenome; human gut
573
648
+
Ala
TGC
[ENA]
¢þ
>WENV182815221
OJYP01000328
[OJYP] human gut metagenome; human gut
648
721
+
Cys
GCA
[ENA]
¢þ
>WENV182815213
OJYP01000242
[OJYP] human gut metagenome; human gut
930
843
-
Leu
CAG
[ENA]
¢þ
>WENV182815209
OJYP01000195
[OJYP] human gut metagenome; human gut
1279
1204
-
Glu
TTC
[ENA]
¢þ
>WENV182815166
OJYP01000003
[OJYP] human gut metagenome; human gut
1589
1518
-
Trp
CCA
[ENA]
¢þ
>WENV182815168
OJYP01000013
[OJYP] human gut metagenome; human gut
4522
4447
-
Arg
TCT
[ENA]
¢þ
>WENV182815208
OJYP01000146
[OJYP] human gut metagenome; human gut
4621
4531
-
Ser
GGA
[ENA]
¢þ
>WENV182815169
OJYP01000014
[OJYP] human gut metagenome; human gut
7021
6949
-
Thr
CGT
[ENA]
¢þ
>WENV182815188
OJYP01000043
[OJYP] human gut metagenome; human gut
7295
7203
-
Ser
TGA
[ENA]
¢þ
>WENV182815183
OJYP01000026
[OJYP] human gut metagenome; human gut
9038
8966
-
Asp
GTC
[ENA]
¢þ
>WENV182815182
OJYP01000026
[OJYP] human gut metagenome; human gut
9118
9044
-
Glu
TTC
[ENA]
¢þ
>WENV182815194
OJYP01000064
[OJYP] human gut metagenome; human gut
14186
14097
-
Ser
CGA
[ENA]
¢þ
>WENV182815206
OJYP01000075
[OJYP] human gut metagenome; human gut
18207
18122
-
Leu
CAA
[ENA]
¢þ
>WENV182815205
OJYP01000075
[OJYP] human gut metagenome; human gut
18290
18220
-
Cys
GCA
[ENA]
¢þ
>WENV182815204
OJYP01000075
[OJYP] human gut metagenome; human gut
18388
18315
-
Gln
TTG
[ENA]
¢þ
>WENV182815203
OJYP01000075
[OJYP] human gut metagenome; human gut
18474
18401
-
His
GTG
[ENA]
¢þ
>WENV182815202
OJYP01000075
[OJYP] human gut metagenome; human gut
18584
18511
-
Trp
CCA
[ENA]
¢þ
>WENV182815201
OJYP01000075
[OJYP] human gut metagenome; human gut
18670
18588
-
Tyr
GTA
[ENA]
¢þ
>WENV182815200
OJYP01000075
[OJYP] human gut metagenome; human gut
18747
18675
-
Phe
GAA
[ENA]
¢þ
>WENV182815199
OJYP01000075
[OJYP] human gut metagenome; human gut
18868
18793
-
Asp
GTC
[ENA]
¢þ
>WENV182815198
OJYP01000075
[OJYP] human gut metagenome; human gut
18952
18878
-
Val
TAC
[ENA]
¢þ
>WENV182815197
OJYP01000075
[OJYP] human gut metagenome; human gut
19051
18978
-
Glu
TTC
[ENA]
¢þ
>WENV182815196
OJYP01000075
[OJYP] human gut metagenome; human gut
19157
19067
-
Ser
GGA
[ENA]
¢þ
>WENV182815195
OJYP01000075
[OJYP] human gut metagenome; human gut
19274
19199
-
Asn
GTT
[ENA]
¢þ
>WENV182815184
OJYP01000028
[OJYP] human gut metagenome; human gut
20262
20335
+
Arg
CCG
[ENA]
¢þ
>WENV182815187
OJYP01000039
[OJYP] human gut metagenome; human gut
21110
21036
-
Arg
TCT
[ENA]
¢þ
>WENV182815186
OJYP01000030
[OJYP] human gut metagenome; human gut
33779
33708
-
Arg
CCG
[ENA]
¢þ
>WENV182815167
OJYP01000013
[OJYP] human gut metagenome; human gut
50771
50846
+
Arg
CCT
[ENA]
¢þ
>WENV182815164
OJYP01000003
[OJYP] human gut metagenome; human gut
55409
55481
+
Thr
GGT
[ENA]
¢þ
>WENV182815170
OJYP01000016
[OJYP] human gut metagenome; human gut
65465
65551
+
Leu
GAG
[ENA]
¢þ
>WENV182815181
OJYP01000022
[OJYP] human gut metagenome; human gut
74081
74008
-
Glu
TTC
[ENA]
¢þ
>WENV182815180
OJYP01000022
[OJYP] human gut metagenome; human gut
74184
74095
-
Ser
GCT
[ENA]
¢þ
>WENV182815171
OJYP01000016
[OJYP] human gut metagenome; human gut
76798
76880
+
Tyr
GTA
[ENA]
¢þ
>WENV182815172
OJYP01000016
[OJYP] human gut metagenome; human gut
76888
76961
+
Gln
TTG
[ENA]
¢þ
>WENV182815179
OJYP01000018
[OJYP] human gut metagenome; human gut
80986
81060
+
Lys
CTT
[ENA]
¢þ
>WENV182815177
OJYP01000017
[OJYP] human gut metagenome; human gut
82440
82526
+
Leu
GAG
[ENA]
¢þ
>WENV182815178
OJYP01000017
[OJYP] human gut metagenome; human gut
82548
82621
+
Gly
TCC
[ENA]
¢þ
>WENV182815165
OJYP01000003
[OJYP] human gut metagenome; human gut
149119
149046
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK