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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJYY] human gut metagenome; human gut
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182816210
OJYY01000373
[OJYY] human gut metagenome; human gut
23
98
+
Glu
CTC
[ENA]
¢þ
>WENV182816237
OJYY01001421
[OJYY] human gut metagenome; human gut
51
127
+
Val
GAC
[ENA]
¢þ
>WENV182816177
OJYY01000078
[OJYY] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182816173
OJYY01000062
[OJYY] human gut metagenome; human gut
63
138
+
Thr
GGT
[ENA]
¢þ
>WENV182816199
OJYY01000304
[OJYY] human gut metagenome; human gut
68
140
+
Ala
TGC
[ENA]
¢þ
>WENV182816183
OJYY01000152
[OJYY] human gut metagenome; human gut
77
147
+
Cys
GCA
[ENA]
¢þ
>WENV182816175
OJYY01000065
[OJYY] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182816257
OJYY01004841
[OJYY] human gut metagenome; human gut
121
197
+
Ile
GAT
[ENA]
¢þ
>WENV182816149
OJYY01000015
[OJYY] human gut metagenome; human gut
122
197
+
Gly
GCC
[ENA]
¢þ
>WENV182816256
OJYY01004346
[OJYY] human gut metagenome; human gut
142
58
-
Leu
CAG
[ENA]
¢þ
>WENV182816229
OJYY01000656
[OJYY] human gut metagenome; human gut
156
70
-
Leu
GAG
[ENA]
¢þ
>WENV182816184
OJYY01000152
[OJYY] human gut metagenome; human gut
160
245
+
Leu
CAA
[ENA]
¢þ
>WENV182816200
OJYY01000304
[OJYY] human gut metagenome; human gut
163
238
+
Met
CAT
[ENA]
¢þ
>WENV182816163
OJYY01000046
[OJYY] human gut metagenome; human gut
176
101
-
Val
TAC
[ENA]
¢þ
>WENV182816241
OJYY01001725
[OJYY] human gut metagenome; human gut
215
142
-
Thr
GGT
[ENA]
¢þ
>WENV182816258
OJYY01004841
[OJYY] human gut metagenome; human gut
226
301
+
Ala
TGC
[ENA]
¢þ
>WENV182816238
OJYY01001651
[OJYY] human gut metagenome; human gut
243
169
-
Arg
CCT
[ENA]
¢þ
>WENV182816201
OJYY01000304
[OJYY] human gut metagenome; human gut
257
332
+
Ile2
CAT
[ENA]
¢þ
>WENV182816240
OJYY01001725
[OJYY] human gut metagenome; human gut
304
218
-
Leu
GAG
[ENA]
¢þ
>WENV182816202
OJYY01000304
[OJYY] human gut metagenome; human gut
365
454
+
Ser
TGA
[ENA]
¢þ
>WENV182816255
OJYY01004256
[OJYY] human gut metagenome; human gut
408
333
-
Phe
GAA
[ENA]
¢þ
>WENV182816226
OJYY01000533
[OJYY] human gut metagenome; human gut
457
532
+
Phe
GAA
[ENA]
¢þ
>WENV182816203
OJYY01000304
[OJYY] human gut metagenome; human gut
487
562
+
fMet
CAT
[ENA]
¢þ
>WENV182816254
OJYY01003684
[OJYY] human gut metagenome; human gut
569
495
-
Lys
CTT
[ENA]
¢þ
>WENV182816204
OJYY01000304
[OJYY] human gut metagenome; human gut
600
676
+
Asp
GTC
[ENA]
¢þ
>WENV182816245
OJYY01002379
[OJYY] human gut metagenome; human gut
657
582
-
Ala
TGC
[ENA]
¢þ
>WENV182816205
OJYY01000304
[OJYY] human gut metagenome; human gut
678
748
+
Gly
TCC
[ENA]
¢þ
>WENV182816253
OJYY01003607
[OJYY] human gut metagenome; human gut
694
778
+
Tyr
GTA
[ENA]
¢þ
>WENV182816250
OJYY01002556
[OJYY] human gut metagenome; human gut
731
648
-
Leu
TAG
[ENA]
¢þ
>WENV182816251
OJYY01002634
[OJYY] human gut metagenome; human gut
734
810
+
Arg
TCT
[ENA]
¢þ
>WENV182816206
OJYY01000304
[OJYY] human gut metagenome; human gut
762
835
+
Ile
GAT
[ENA]
¢þ
>WENV182816244
OJYY01002379
[OJYY] human gut metagenome; human gut
839
763
-
Ile
GAT
[ENA]
¢þ
>WENV182816207
OJYY01000304
[OJYY] human gut metagenome; human gut
845
934
+
Ser
GCT
[ENA]
¢þ
>WENV182816242
OJYY01001736
[OJYY] human gut metagenome; human gut
880
966
+
Leu
GAG
[ENA]
¢þ
>WENV182816249
OJYY01002556
[OJYY] human gut metagenome; human gut
929
854
-
Thr
TGT
[ENA]
¢þ
>WENV182816208
OJYY01000304
[OJYY] human gut metagenome; human gut
948
1021
+
Glu
TTC
[ENA]
¢þ
>WENV182816212
OJYY01000417
[OJYY] human gut metagenome; human gut
963
1050
+
Ser
TGA
[ENA]
¢þ
>WENV182816234
OJYY01001104
[OJYY] human gut metagenome; human gut
980
893
-
Ser
TGA
[ENA]
¢þ
>WENV182816252
OJYY01002760
[OJYY] human gut metagenome; human gut
1002
1076
+
Cys
GCA
[ENA]
¢þ
>WENV182816248
OJYY01002556
[OJYY] human gut metagenome; human gut
1020
945
-
Val
TAC
[ENA]
¢þ
>WENV182816247
OJYY01002556
[OJYY] human gut metagenome; human gut
1100
1025
-
Glu
TTC
[ENA]
¢þ
>WENV182816185
OJYY01000159
[OJYY] human gut metagenome; human gut
1109
1184
+
Ile2
CAT
[ENA]
¢þ
>WENV182816231
OJYY01000818
[OJYY] human gut metagenome; human gut
1127
1199
+
Arg
CCT
[ENA]
¢þ
>WENV182816246
OJYY01002556
[OJYY] human gut metagenome; human gut
1177
1102
-
Asn
GTT
[ENA]
¢þ
>WENV182816243
OJYY01002030
[OJYY] human gut metagenome; human gut
1198
1273
+
Gln
CTG
[ENA]
¢þ
>WENV182816230
OJYY01000694
[OJYY] human gut metagenome; human gut
1287
1360
+
Gly
TCC
[ENA]
¢þ
>WENV182816172
OJYY01000059
[OJYY] human gut metagenome; human gut
1312
1240
-
Thr
CGT
[ENA]
¢þ
>WENV182816214
OJYY01000479
[OJYY] human gut metagenome; human gut
1424
1499
+
Ala
GGC
[ENA]
¢þ
>WENV182816182
OJYY01000119
[OJYY] human gut metagenome; human gut
1432
1357
-
Arg
TCT
[ENA]
¢þ
>WENV182816235
OJYY01001215
[OJYY] human gut metagenome; human gut
1509
1433
-
Asp
GTC
[ENA]
¢þ
>WENV182816215
OJYY01000479
[OJYY] human gut metagenome; human gut
1541
1616
+
Ala
GGC
[ENA]
¢þ
>WENV182816233
OJYY01000968
[OJYY] human gut metagenome; human gut
1545
1632
+
Ser
TGA
[ENA]
¢þ
>WENV182816239
OJYY01001664
[OJYY] human gut metagenome; human gut
1613
1688
+
Lys
CTT
[ENA]
¢þ
>WENV182816232
OJYY01000947
[OJYY] human gut metagenome; human gut
1699
1623
-
Pro
GGG
[ENA]
¢þ
>WENV182816236
OJYY01001316
[OJYY] human gut metagenome; human gut
1842
1915
+
Trp
CCA
[ENA]
¢þ
>WENV182816225
OJYY01000513
[OJYY] human gut metagenome; human gut
1929
1842
-
Ser
GGA
[ENA]
¢þ
>WENV182816180
OJYY01000089
[OJYY] human gut metagenome; human gut
2324
2249
-
Arg
CCT
[ENA]
¢þ
>WENV182816197
OJYY01000262
[OJYY] human gut metagenome; human gut
2606
2700
+
SeC
TCA
[ENA]
¢þ
>WENV182816161
OJYY01000046
[OJYY] human gut metagenome; human gut
2875
2950
+
Ala
GGC
[ENA]
¢þ
>WENV182816186
OJYY01000177
[OJYY] human gut metagenome; human gut
3125
3198
+
Ile2
CAT
[ENA]
¢þ
>WENV182816174
OJYY01000064
[OJYY] human gut metagenome; human gut
3133
3046
-
Ser
GGA
[ENA]
¢þ
>WENV182816179
OJYY01000080
[OJYY] human gut metagenome; human gut
3259
3187
-
Thr
GGT
[ENA]
¢þ
>WENV182816224
OJYY01000505
[OJYY] human gut metagenome; human gut
3452
3365
-
Ser
TGA
[ENA]
¢þ
>WENV182816227
OJYY01000640
[OJYY] human gut metagenome; human gut
3789
3865
+
Ile2
CAT
[ENA]
¢þ
>WENV182816228
OJYY01000640
[OJYY] human gut metagenome; human gut
3871
3946
+
Ala
TGC
[ENA]
¢þ
>WENV182816171
OJYY01000058
[OJYY] human gut metagenome; human gut
3958
3883
-
Asn
GTT
[ENA]
¢þ
>WENV182816223
OJYY01000480
[OJYY] human gut metagenome; human gut
4075
4000
-
Ala
TGC
[ENA]
¢þ
>WENV182816222
OJYY01000480
[OJYY] human gut metagenome; human gut
4167
4091
-
Pro
TGG
[ENA]
¢þ
>WENV182816209
OJYY01000340
[OJYY] human gut metagenome; human gut
4265
4190
-
Thr
TGT
[ENA]
¢þ
>WENV182816221
OJYY01000480
[OJYY] human gut metagenome; human gut
4267
4191
-
Arg
ACG
[ENA]
¢þ
>WENV182816213
OJYY01000433
[OJYY] human gut metagenome; human gut
4438
4514
+
Arg
TCT
[ENA]
¢þ
>WENV182816220
OJYY01000480
[OJYY] human gut metagenome; human gut
4473
4398
-
Phe
GAA
[ENA]
¢þ
>WENV182816219
OJYY01000480
[OJYY] human gut metagenome; human gut
4552
4476
-
Asp
GTC
[ENA]
¢þ
>WENV182816218
OJYY01000480
[OJYY] human gut metagenome; human gut
4767
4675
-
Ser
TGA
[ENA]
¢þ
>WENV182816176
OJYY01000077
[OJYY] human gut metagenome; human gut
4772
4847
+
Arg
TCT
[ENA]
¢þ
>WENV182816217
OJYY01000480
[OJYY] human gut metagenome; human gut
4856
4780
-
Ile2
CAT
[ENA]
¢þ
>WENV182816216
OJYY01000480
[OJYY] human gut metagenome; human gut
4969
4893
-
Met
CAT
[ENA]
¢þ
>WENV182816211
OJYY01000379
[OJYY] human gut metagenome; human gut
5501
5576
+
Thr
TGT
[ENA]
¢þ
>WENV182816167
OJYY01000058
[OJYY] human gut metagenome; human gut
5716
5791
+
Asn
GTT
[ENA]
¢þ
>WENV182816196
OJYY01000250
[OJYY] human gut metagenome; human gut
6230
6305
+
Arg
TCT
[ENA]
¢þ
>WENV182816187
OJYY01000183
[OJYY] human gut metagenome; human gut
8246
8171
-
Thr
CGT
[ENA]
¢þ
>WENV182816198
OJYY01000281
[OJYY] human gut metagenome; human gut
8913
8829
-
Leu
CAA
[ENA]
¢þ
>WENV182816195
OJYY01000209
[OJYY] human gut metagenome; human gut
12216
12143
-
Pro
TGG
[ENA]
¢þ
>WENV182816194
OJYY01000209
[OJYY] human gut metagenome; human gut
12379
12306
-
Arg
ACG
[ENA]
¢þ
>WENV182816193
OJYY01000209
[OJYY] human gut metagenome; human gut
12479
12394
-
Leu
TAA
[ENA]
¢þ
>WENV182816192
OJYY01000209
[OJYY] human gut metagenome; human gut
12566
12495
-
Gly
GCC
[ENA]
¢þ
>WENV182816191
OJYY01000209
[OJYY] human gut metagenome; human gut
12646
12571
-
Thr
TGT
[ENA]
¢þ
>WENV182816190
OJYY01000209
[OJYY] human gut metagenome; human gut
12735
12652
-
Leu
TAG
[ENA]
¢þ
>WENV182816189
OJYY01000209
[OJYY] human gut metagenome; human gut
12824
12750
-
Lys
TTT
[ENA]
¢þ
>WENV182816188
OJYY01000209
[OJYY] human gut metagenome; human gut
12903
12829
-
Val
TAC
[ENA]
¢þ
>WENV182816170
OJYY01000058
[OJYY] human gut metagenome; human gut
14713
14638
-
Asn
GTT
[ENA]
¢þ
>WENV182816160
OJYY01000039
[OJYY] human gut metagenome; human gut
18903
18976
+
Arg
CCG
[ENA]
¢þ
>WENV182816169
OJYY01000058
[OJYY] human gut metagenome; human gut
19954
19879
-
Asn
GTT
[ENA]
¢þ
>WENV182816168
OJYY01000058
[OJYY] human gut metagenome; human gut
20946
21035
+
Ser
CGA
[ENA]
¢þ
>WENV182816166
OJYY01000052
[OJYY] human gut metagenome; human gut
21898
21985
+
Ser
TGA
[ENA]
¢þ
>WENV182816155
OJYY01000027
[OJYY] human gut metagenome; human gut
22726
22650
-
Val
GAC
[ENA]
¢þ
>WENV182816154
OJYY01000027
[OJYY] human gut metagenome; human gut
22807
22731
-
Val
GAC
[ENA]
¢þ
>WENV182816153
OJYY01000027
[OJYY] human gut metagenome; human gut
22888
22812
-
Val
GAC
[ENA]
¢þ
>WENV182816162
OJYY01000046
[OJYY] human gut metagenome; human gut
23347
23273
-
Arg
CCT
[ENA]
¢þ
>WENV182816147
OJYY01000008
[OJYY] human gut metagenome; human gut
25484
25409
-
Ile2
CAT
[ENA]
¢þ
>WENV182816181
OJYY01000094
[OJYY] human gut metagenome; human gut
27045
26961
-
Leu
CAA
[ENA]
¢þ
>WENV182816178
OJYY01000078
[OJYY] human gut metagenome; human gut
31635
31724
+
Ser
CGA
[ENA]
¢þ
>WENV182816164
OJYY01000048
[OJYY] human gut metagenome; human gut
33259
33186
-
Gly
CCC
[ENA]
¢þ
>WENV182816158
OJYY01000031
[OJYY] human gut metagenome; human gut
34319
34395
+
Arg
TCT
[ENA]
¢þ
>WENV182816144
OJYY01000002
[OJYY] human gut metagenome; human gut
41016
41091
+
Phe
GAA
[ENA]
¢þ
>WENV182816152
OJYY01000021
[OJYY] human gut metagenome; human gut
47841
47935
+
SeC
TCA
[ENA]
¢þ
>WENV182816165
OJYY01000050
[OJYY] human gut metagenome; human gut
47954
47878
-
Pro
TGG
[ENA]
¢þ
>WENV182816157
OJYY01000030
[OJYY] human gut metagenome; human gut
56182
56106
-
fMet
CAT
[ENA]
¢þ
>WENV182816159
OJYY01000032
[OJYY] human gut metagenome; human gut
58318
58242
-
Asp
GTC
[ENA]
¢þ
>WENV182816156
OJYY01000030
[OJYY] human gut metagenome; human gut
60198
60112
-
Leu
GAG
[ENA]
¢þ
>WENV182816150
OJYY01000019
[OJYY] human gut metagenome; human gut
66653
66727
+
Asn
GTT
[ENA]
¢þ
>WENV182816151
OJYY01000019
[OJYY] human gut metagenome; human gut
66733
66809
+
Arg
TCT
[ENA]
¢þ
>WENV182816146
OJYY01000008
[OJYY] human gut metagenome; human gut
95132
95057
-
Phe
GAA
[ENA]
¢þ
>WENV182816148
OJYY01000013
[OJYY] human gut metagenome; human gut
95266
95190
-
Pro
CGG
[ENA]
¢þ
>WENV182816143
OJYY01000001
[OJYY] human gut metagenome; human gut
126228
126152
-
Pro
GGG
[ENA]
¢þ
>WENV182816145
OJYY01000005
[OJYY] human gut metagenome; human gut
152140
152232
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK