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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJZD] human gut metagenome; human gut
HIT:
77 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182816722
OJZD01000736
[OJZD] human gut metagenome; human gut
7
80
+
Ile2
CAT
[ENA]
¢þ
>WENV182816672
OJZD01000040
[OJZD] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182816677
OJZD01000088
[OJZD] human gut metagenome; human gut
77
147
+
Cys
GCA
[ENA]
¢þ
>WENV182816691
OJZD01000148
[OJZD] human gut metagenome; human gut
84
159
+
Met
CAT
[ENA]
¢þ
>WENV182816724
OJZD01000982
[OJZD] human gut metagenome; human gut
87
162
+
Ile
GAT
[ENA]
¢þ
>WENV182816678
OJZD01000088
[OJZD] human gut metagenome; human gut
160
245
+
Leu
CAA
[ENA]
¢þ
>WENV182816729
OJZD01001201
[OJZD] human gut metagenome; human gut
164
78
-
Leu
GAG
[ENA]
¢þ
>WENV182816692
OJZD01000148
[OJZD] human gut metagenome; human gut
178
253
+
Ile2
CAT
[ENA]
¢þ
>WENV182816725
OJZD01000982
[OJZD] human gut metagenome; human gut
244
333
+
Ser
TGA
[ENA]
¢þ
>WENV182816693
OJZD01000148
[OJZD] human gut metagenome; human gut
286
375
+
Ser
TGA
[ENA]
¢þ
>WENV182816726
OJZD01000982
[OJZD] human gut metagenome; human gut
344
417
+
fMet
CAT
[ENA]
¢þ
>WENV182816720
OJZD01000387
[OJZD] human gut metagenome; human gut
352
269
-
Leu
CAA
[ENA]
¢þ
>WENV182816694
OJZD01000148
[OJZD] human gut metagenome; human gut
408
483
+
fMet
CAT
[ENA]
¢þ
>WENV182816727
OJZD01000982
[OJZD] human gut metagenome; human gut
421
493
+
Phe
GAA
[ENA]
¢þ
>WENV182816721
OJZD01000581
[OJZD] human gut metagenome; human gut
445
519
+
Lys
CTT
[ENA]
¢þ
>WENV182816723
OJZD01000958
[OJZD] human gut metagenome; human gut
504
589
+
Leu
AAG
[ENA]
¢þ
>WENV182816728
OJZD01000982
[OJZD] human gut metagenome; human gut
505
587
+
Tyr
GTA
[ENA]
¢þ
>WENV182816695
OJZD01000148
[OJZD] human gut metagenome; human gut
521
597
+
Asp
GTC
[ENA]
¢þ
>WENV182816696
OJZD01000148
[OJZD] human gut metagenome; human gut
599
669
+
Gly
TCC
[ENA]
¢þ
>WENV182816697
OJZD01000148
[OJZD] human gut metagenome; human gut
678
753
+
Ile
GAT
[ENA]
¢þ
>WENV182816719
OJZD01000387
[OJZD] human gut metagenome; human gut
725
652
-
Cys
GCA
[ENA]
¢þ
>WENV182816698
OJZD01000148
[OJZD] human gut metagenome; human gut
766
839
+
Glu
TTC
[ENA]
¢þ
>WENV182816718
OJZD01000387
[OJZD] human gut metagenome; human gut
802
731
-
Gln
TTG
[ENA]
¢þ
>WENV182816699
OJZD01000148
[OJZD] human gut metagenome; human gut
851
940
+
Ser
TGA
[ENA]
¢þ
>WENV182816717
OJZD01000387
[OJZD] human gut metagenome; human gut
886
813
-
His
GTG
[ENA]
¢þ
>WENV182816663
OJZD01000036
[OJZD] human gut metagenome; human gut
958
1029
+
Arg
CCG
[ENA]
¢þ
>WENV182816716
OJZD01000387
[OJZD] human gut metagenome; human gut
962
889
-
Trp
CCA
[ENA]
¢þ
>WENV182816700
OJZD01000148
[OJZD] human gut metagenome; human gut
973
1048
+
fMet
CAT
[ENA]
¢þ
>WENV182816715
OJZD01000387
[OJZD] human gut metagenome; human gut
1054
971
-
Tyr
GTA
[ENA]
¢þ
>WENV182816701
OJZD01000148
[OJZD] human gut metagenome; human gut
1096
1172
+
Asp
GTC
[ENA]
¢þ
>WENV182816714
OJZD01000387
[OJZD] human gut metagenome; human gut
1134
1059
-
Thr
TGT
[ENA]
¢þ
>WENV182816702
OJZD01000148
[OJZD] human gut metagenome; human gut
1174
1244
+
Gly
TCC
[ENA]
¢þ
>WENV182816713
OJZD01000387
[OJZD] human gut metagenome; human gut
1216
1142
-
Phe
GAA
[ENA]
¢þ
>WENV182816703
OJZD01000148
[OJZD] human gut metagenome; human gut
1253
1328
+
Ile
GAT
[ENA]
¢þ
>WENV182816704
OJZD01000148
[OJZD] human gut metagenome; human gut
1337
1426
+
Ser
GCT
[ENA]
¢þ
>WENV182816690
OJZD01000140
[OJZD] human gut metagenome; human gut
1342
1252
-
Ser
GGA
[ENA]
¢þ
>WENV182816712
OJZD01000387
[OJZD] human gut metagenome; human gut
1393
1320
-
fMet
CAT
[ENA]
¢þ
>WENV182816705
OJZD01000148
[OJZD] human gut metagenome; human gut
1440
1513
+
Glu
TTC
[ENA]
¢þ
>WENV182816689
OJZD01000140
[OJZD] human gut metagenome; human gut
1467
1394
-
Glu
TTC
[ENA]
¢þ
>WENV182816711
OJZD01000387
[OJZD] human gut metagenome; human gut
1497
1405
-
Ser
TGA
[ENA]
¢þ
>WENV182816688
OJZD01000140
[OJZD] human gut metagenome; human gut
1542
1468
-
Asn
GTT
[ENA]
¢þ
>WENV182816710
OJZD01000387
[OJZD] human gut metagenome; human gut
1610
1535
-
Asp
GTC
[ENA]
¢þ
>WENV182816687
OJZD01000140
[OJZD] human gut metagenome; human gut
1625
1552
-
Gly
TCC
[ENA]
¢þ
>WENV182816709
OJZD01000387
[OJZD] human gut metagenome; human gut
1708
1617
-
Ser
TGA
[ENA]
¢þ
>WENV182816686
OJZD01000140
[OJZD] human gut metagenome; human gut
1718
1643
-
His
GTG
[ENA]
¢þ
>WENV182816675
OJZD01000074
[OJZD] human gut metagenome; human gut
1770
1684
-
Lys
TTT
[ENA]
¢þ
>WENV182816708
OJZD01000387
[OJZD] human gut metagenome; human gut
1790
1717
-
Ile2
CAT
[ENA]
¢þ
>WENV182816685
OJZD01000140
[OJZD] human gut metagenome; human gut
1805
1731
-
Phe
GAA
[ENA]
¢þ
>WENV182816684
OJZD01000140
[OJZD] human gut metagenome; human gut
1890
1815
-
Asp
GTC
[ENA]
¢þ
>WENV182816707
OJZD01000387
[OJZD] human gut metagenome; human gut
1891
1817
-
Met
CAT
[ENA]
¢þ
>WENV182816706
OJZD01000271
[OJZD] human gut metagenome; human gut
1962
2035
+
Pro
TGG
[ENA]
¢þ
>WENV182816683
OJZD01000140
[OJZD] human gut metagenome; human gut
1978
1905
-
fMet
CAT
[ENA]
¢þ
>WENV182816681
OJZD01000110
[OJZD] human gut metagenome; human gut
2973
3047
+
Asn
GTT
[ENA]
¢þ
>WENV182816682
OJZD01000110
[OJZD] human gut metagenome; human gut
3050
3140
+
Ser
GCT
[ENA]
¢þ
>WENV182816656
OJZD01000006
[OJZD] human gut metagenome; human gut
3265
3190
-
Arg
TCT
[ENA]
¢þ
>WENV182816679
OJZD01000093
[OJZD] human gut metagenome; human gut
8635
8717
+
Tyr
GTA
[ENA]
¢þ
>WENV182816680
OJZD01000093
[OJZD] human gut metagenome; human gut
8725
8798
+
Gln
TTG
[ENA]
¢þ
>WENV182816659
OJZD01000022
[OJZD] human gut metagenome; human gut
9989
10062
+
Arg
TCT
[ENA]
¢þ
>WENV182816676
OJZD01000078
[OJZD] human gut metagenome; human gut
11653
11745
+
Ser
TGA
[ENA]
¢þ
>WENV182816674
OJZD01000060
[OJZD] human gut metagenome; human gut
22434
22508
+
Arg
TCT
[ENA]
¢þ
>WENV182816673
OJZD01000054
[OJZD] human gut metagenome; human gut
25613
25686
+
Ile2
CAT
[ENA]
¢þ
>WENV182816653
OJZD01000002
[OJZD] human gut metagenome; human gut
30146
30074
-
Thr
CGT
[ENA]
¢þ
>WENV182816671
OJZD01000037
[OJZD] human gut metagenome; human gut
31866
31793
-
Pro
TGG
[ENA]
¢þ
>WENV182816670
OJZD01000037
[OJZD] human gut metagenome; human gut
32029
31956
-
Arg
ACG
[ENA]
¢þ
>WENV182816669
OJZD01000037
[OJZD] human gut metagenome; human gut
32129
32044
-
Leu
TAA
[ENA]
¢þ
>WENV182816668
OJZD01000037
[OJZD] human gut metagenome; human gut
32216
32145
-
Gly
GCC
[ENA]
¢þ
>WENV182816667
OJZD01000037
[OJZD] human gut metagenome; human gut
32296
32221
-
Thr
TGT
[ENA]
¢þ
>WENV182816666
OJZD01000037
[OJZD] human gut metagenome; human gut
32385
32302
-
Leu
TAG
[ENA]
¢þ
>WENV182816665
OJZD01000037
[OJZD] human gut metagenome; human gut
32474
32400
-
Lys
TTT
[ENA]
¢þ
>WENV182816664
OJZD01000037
[OJZD] human gut metagenome; human gut
32553
32479
-
Val
TAC
[ENA]
¢þ
>WENV182816660
OJZD01000028
[OJZD] human gut metagenome; human gut
38944
39019
+
Val
TAC
[ENA]
¢þ
>WENV182816661
OJZD01000028
[OJZD] human gut metagenome; human gut
39026
39101
+
Thr
TGT
[ENA]
¢þ
>WENV182816662
OJZD01000028
[OJZD] human gut metagenome; human gut
39107
39181
+
Lys
TTT
[ENA]
¢þ
>WENV182816655
OJZD01000006
[OJZD] human gut metagenome; human gut
54375
54450
+
Arg
CCT
[ENA]
¢þ
>WENV182816654
OJZD01000004
[OJZD] human gut metagenome; human gut
59215
59288
+
Arg
CCG
[ENA]
¢þ
>WENV182816657
OJZD01000008
[OJZD] human gut metagenome; human gut
61194
61266
+
Thr
GGT
[ENA]
¢þ
>WENV182816658
OJZD01000016
[OJZD] human gut metagenome; human gut
61980
62066
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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