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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJZK] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182817261
OJZK01003389
[OJZK] human gut metagenome; human gut
96
170
+
Gln
TTG
[ENA]
¢þ
>WENV182817265
OJZK01004546
[OJZK] human gut metagenome; human gut
107
194
+
Ser
GCT
[ENA]
¢þ
>WENV182817255
OJZK01001872
[OJZK] human gut metagenome; human gut
109
185
+
Arg
CCG
[ENA]
¢þ
>WENV182817258
OJZK01002494
[OJZK] human gut metagenome; human gut
127
40
-
Ser
GGA
[ENA]
¢þ
>WENV182817272
OJZK01005480
[OJZK] human gut metagenome; human gut
136
61
-
Thr
TGT
[ENA]
¢þ
>WENV182817273
OJZK01005666
[OJZK] human gut metagenome; human gut
149
224
+
Pro
GGG
[ENA]
¢þ
>WENV182817262
OJZK01003389
[OJZK] human gut metagenome; human gut
186
262
+
Met
CAT
[ENA]
¢þ
>WENV182817271
OJZK01005480
[OJZK] human gut metagenome; human gut
225
142
-
Leu
TAG
[ENA]
¢þ
>WENV182817234
OJZK01000065
[OJZK] human gut metagenome; human gut
243
157
-
Leu
GAG
[ENA]
¢þ
>WENV182817256
OJZK01001872
[OJZK] human gut metagenome; human gut
244
319
+
His
GTG
[ENA]
¢þ
>WENV182817250
OJZK01000839
[OJZK] human gut metagenome; human gut
261
177
-
Leu
CAA
[ENA]
¢þ
>WENV182817264
OJZK01004251
[OJZK] human gut metagenome; human gut
261
335
+
Thr
TGT
[ENA]
¢þ
>WENV182817266
OJZK01004546
[OJZK] human gut metagenome; human gut
272
344
+
Glu
CTC
[ENA]
¢þ
>WENV182817267
OJZK01004607
[OJZK] human gut metagenome; human gut
291
217
-
His
GTG
[ENA]
¢þ
>WENV182817263
OJZK01003389
[OJZK] human gut metagenome; human gut
311
385
+
Gln
CTG
[ENA]
¢þ
>WENV182817270
OJZK01005480
[OJZK] human gut metagenome; human gut
314
240
-
Lys
TTT
[ENA]
¢þ
>WENV182817257
OJZK01001872
[OJZK] human gut metagenome; human gut
340
426
+
Leu
CAG
[ENA]
¢þ
>WENV182817269
OJZK01005480
[OJZK] human gut metagenome; human gut
393
319
-
Val
TAC
[ENA]
¢þ
>WENV182817259
OJZK01003375
[OJZK] human gut metagenome; human gut
412
485
+
Gly
GCC
[ENA]
¢þ
>WENV182817260
OJZK01003375
[OJZK] human gut metagenome; human gut
499
585
+
Leu
TAA
[ENA]
¢þ
>WENV182817268
OJZK01005427
[OJZK] human gut metagenome; human gut
530
456
-
Asp
GTC
[ENA]
¢þ
>WENV182817249
OJZK01000814
[OJZK] human gut metagenome; human gut
686
611
-
Ile2
CAT
[ENA]
¢þ
>WENV182817253
OJZK01001065
[OJZK] human gut metagenome; human gut
703
776
+
Phe
GAA
[ENA]
¢þ
>WENV182817244
OJZK01000505
[OJZK] human gut metagenome; human gut
809
884
+
Lys
TTT
[ENA]
¢þ
>WENV182817235
OJZK01000096
[OJZK] human gut metagenome; human gut
880
804
-
Pro
GGG
[ENA]
¢þ
>WENV182817254
OJZK01001356
[OJZK] human gut metagenome; human gut
1099
1025
-
Asn
GTT
[ENA]
¢þ
>WENV182817239
OJZK01000208
[OJZK] human gut metagenome; human gut
1215
1121
-
SeC
TCA
[ENA]
¢þ
>WENV182817251
OJZK01001009
[OJZK] human gut metagenome; human gut
1233
1150
-
Tyr
GTA
[ENA]
¢þ
>WENV182817246
OJZK01000592
[OJZK] human gut metagenome; human gut
1547
1622
+
Asn
GTT
[ENA]
¢þ
>WENV182817252
OJZK01001039
[OJZK] human gut metagenome; human gut
1558
1633
+
Val
TAC
[ENA]
¢þ
>WENV182817248
OJZK01000738
[OJZK] human gut metagenome; human gut
1667
1592
-
Phe
GAA
[ENA]
¢þ
>WENV182817247
OJZK01000642
[OJZK] human gut metagenome; human gut
2041
2114
+
Gly
CCC
[ENA]
¢þ
>WENV182817229
OJZK01000022
[OJZK] human gut metagenome; human gut
2220
2145
-
Glu
TTC
[ENA]
¢þ
>WENV182817245
OJZK01000553
[OJZK] human gut metagenome; human gut
2243
2167
-
Asp
GTC
[ENA]
¢þ
>WENV182817230
OJZK01000027
[OJZK] human gut metagenome; human gut
2299
2375
+
Ile
GAT
[ENA]
¢þ
>WENV182817240
OJZK01000325
[OJZK] human gut metagenome; human gut
2364
2439
+
Gly
GCC
[ENA]
¢þ
>WENV182817231
OJZK01000027
[OJZK] human gut metagenome; human gut
2404
2478
+
Ala
TGC
[ENA]
¢þ
>WENV182817241
OJZK01000339
[OJZK] human gut metagenome; human gut
2545
2637
+
Ser
GCT
[ENA]
¢þ
>WENV182817242
OJZK01000339
[OJZK] human gut metagenome; human gut
2641
2717
+
Arg
ACG
[ENA]
¢þ
>WENV182817243
OJZK01000358
[OJZK] human gut metagenome; human gut
2650
2574
-
Arg
TCT
[ENA]
¢þ
>WENV182817236
OJZK01000151
[OJZK] human gut metagenome; human gut
3112
3187
+
Ile2
CAT
[ENA]
¢þ
>WENV182817237
OJZK01000151
[OJZK] human gut metagenome; human gut
3268
3343
+
Thr
TGT
[ENA]
¢þ
>WENV182817238
OJZK01000151
[OJZK] human gut metagenome; human gut
3352
3436
+
Tyr
GTA
[ENA]
¢þ
>WENV182817232
OJZK01000037
[OJZK] human gut metagenome; human gut
4708
4784
+
Pro
CGG
[ENA]
¢þ
>WENV182817233
OJZK01000038
[OJZK] human gut metagenome; human gut
4780
4705
-
Thr
GGT
[ENA]
¢þ
>WENV182817228
OJZK01000011
[OJZK] human gut metagenome; human gut
8673
8749
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK