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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJZN] human gut metagenome; human gut
HIT:
120 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182818047
OJZN01005081
[OJZN] human gut metagenome; human gut
7
99
+
Ser
TGA
[ENA]
¢þ
>WENV182818046
OJZN01004876
[OJZN] human gut metagenome; human gut
58
129
+
Arg
CCG
[ENA]
¢þ
>WENV182817976
OJZN01000207
[OJZN] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182817958
OJZN01000107
[OJZN] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182818052
OJZN01005334
[OJZN] human gut metagenome; human gut
64
153
+
Ser
TGA
[ENA]
¢þ
>WENV182818038
OJZN01003860
[OJZN] human gut metagenome; human gut
69
143
+
Lys
CTT
[ENA]
¢þ
>WENV182817970
OJZN01000124
[OJZN] human gut metagenome; human gut
87
162
+
Lys
TTT
[ENA]
¢þ
>WENV182818041
OJZN01004010
[OJZN] human gut metagenome; human gut
98
23
-
Ile2
CAT
[ENA]
¢þ
>WENV182818021
OJZN01001316
[OJZN] human gut metagenome; human gut
101
176
+
Trp
CCA
[ENA]
¢þ
>WENV182817989
OJZN01000381
[OJZN] human gut metagenome; human gut
106
182
+
Asp
GTC
[ENA]
¢þ
>WENV182818048
OJZN01005110
[OJZN] human gut metagenome; human gut
109
23
-
Leu
GAG
[ENA]
¢þ
>WENV182818040
OJZN01003908
[OJZN] human gut metagenome; human gut
117
42
-
Thr
TGT
[ENA]
¢þ
>WENV182818039
OJZN01003889
[OJZN] human gut metagenome; human gut
121
196
+
Glu
TTC
[ENA]
¢þ
>WENV182818030
OJZN01003134
[OJZN] human gut metagenome; human gut
137
61
-
fMet
CAT
[ENA]
¢þ
>WENV182818057
OJZN01005447
[OJZN] human gut metagenome; human gut
143
68
-
His
GTG
[ENA]
¢þ
>WENV182817977
OJZN01000207
[OJZN] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182818009
OJZN01000803
[OJZN] human gut metagenome; human gut
171
96
-
Val
TAC
[ENA]
¢þ
>WENV182817959
OJZN01000107
[OJZN] human gut metagenome; human gut
176
266
+
Ser
GGA
[ENA]
¢þ
>WENV182817986
OJZN01000318
[OJZN] human gut metagenome; human gut
183
97
-
Leu
GAG
[ENA]
¢þ
>WENV182818053
OJZN01005334
[OJZN] human gut metagenome; human gut
186
261
+
fMet
CAT
[ENA]
¢þ
>WENV182818034
OJZN01003683
[OJZN] human gut metagenome; human gut
199
125
-
His
GTG
[ENA]
¢þ
>WENV182817978
OJZN01000207
[OJZN] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182818044
OJZN01004541
[OJZN] human gut metagenome; human gut
262
187
-
Thr
CGT
[ENA]
¢þ
>WENV182818025
OJZN01002421
[OJZN] human gut metagenome; human gut
267
342
+
Arg
CCT
[ENA]
¢þ
>WENV182818051
OJZN01005225
[OJZN] human gut metagenome; human gut
276
350
+
Lys
CTT
[ENA]
¢þ
>WENV182818045
OJZN01004551
[OJZN] human gut metagenome; human gut
278
205
-
Ala
TGC
[ENA]
¢þ
>WENV182817960
OJZN01000107
[OJZN] human gut metagenome; human gut
282
355
+
Glu
TTC
[ENA]
¢þ
>WENV182818056
OJZN01005447
[OJZN] human gut metagenome; human gut
287
211
-
Arg
CCG
[ENA]
¢þ
>WENV182818049
OJZN01005192
[OJZN] human gut metagenome; human gut
290
363
+
fMet
CAT
[ENA]
¢þ
>WENV182818043
OJZN01004241
[OJZN] human gut metagenome; human gut
292
367
+
Pro
TGG
[ENA]
¢þ
>WENV182818054
OJZN01005334
[OJZN] human gut metagenome; human gut
308
383
+
Asp
GTC
[ENA]
¢þ
>WENV182817979
OJZN01000207
[OJZN] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182818042
OJZN01004088
[OJZN] human gut metagenome; human gut
353
428
+
Ile
GAT
[ENA]
¢þ
>WENV182818058
OJZN01005461
[OJZN] human gut metagenome; human gut
363
455
+
Ser
GCT
[ENA]
¢þ
>WENV182818050
OJZN01005192
[OJZN] human gut metagenome; human gut
378
450
+
Asp
GTC
[ENA]
¢þ
>WENV182817961
OJZN01000107
[OJZN] human gut metagenome; human gut
381
455
+
Val
TAC
[ENA]
¢þ
>WENV182818055
OJZN01005334
[OJZN] human gut metagenome; human gut
387
464
+
Phe
GAA
[ENA]
¢þ
>WENV182817980
OJZN01000207
[OJZN] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182818032
OJZN01003391
[OJZN] human gut metagenome; human gut
454
367
-
Ser
CGA
[ENA]
¢þ
>WENV182817962
OJZN01000107
[OJZN] human gut metagenome; human gut
465
540
+
Asp
GTC
[ENA]
¢þ
>WENV182818027
OJZN01002666
[OJZN] human gut metagenome; human gut
471
400
-
Trp
CCA
[ENA]
¢þ
>WENV182818031
OJZN01003361
[OJZN] human gut metagenome; human gut
485
398
-
Ser
GGA
[ENA]
¢þ
>WENV182817981
OJZN01000207
[OJZN] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182818035
OJZN01003802
[OJZN] human gut metagenome; human gut
577
652
+
Val
TAC
[ENA]
¢þ
>WENV182818033
OJZN01003500
[OJZN] human gut metagenome; human gut
586
511
-
Arg
TCT
[ENA]
¢þ
>WENV182817963
OJZN01000107
[OJZN] human gut metagenome; human gut
586
658
+
Phe
GAA
[ENA]
¢þ
>WENV182818020
OJZN01001231
[OJZN] human gut metagenome; human gut
587
662
+
Asn
GTT
[ENA]
¢þ
>WENV182817982
OJZN01000207
[OJZN] human gut metagenome; human gut
589
662
+
Pro
TGG
[ENA]
¢þ
>WENV182818036
OJZN01003802
[OJZN] human gut metagenome; human gut
659
734
+
Thr
TGT
[ENA]
¢þ
>WENV182817964
OJZN01000107
[OJZN] human gut metagenome; human gut
663
745
+
Tyr
GTA
[ENA]
¢þ
>WENV182817995
OJZN01000525
[OJZN] human gut metagenome; human gut
695
620
-
Asn
GTT
[ENA]
¢þ
>WENV182818037
OJZN01003802
[OJZN] human gut metagenome; human gut
739
822
+
Tyr
GTA
[ENA]
¢þ
>WENV182817965
OJZN01000107
[OJZN] human gut metagenome; human gut
749
822
+
Trp
CCA
[ENA]
¢þ
>WENV182818029
OJZN01002889
[OJZN] human gut metagenome; human gut
767
843
+
Pro
CGG
[ENA]
¢þ
>WENV182818007
OJZN01000735
[OJZN] human gut metagenome; human gut
798
892
+
SeC
TCA
[ENA]
¢þ
>WENV182818026
OJZN01002577
[OJZN] human gut metagenome; human gut
814
741
-
Ala
GGC
[ENA]
¢þ
>WENV182817966
OJZN01000107
[OJZN] human gut metagenome; human gut
859
932
+
His
GTG
[ENA]
¢þ
>WENV182818011
OJZN01000870
[OJZN] human gut metagenome; human gut
904
988
+
Tyr
GTA
[ENA]
¢þ
>WENV182817967
OJZN01000107
[OJZN] human gut metagenome; human gut
945
1018
+
Gln
TTG
[ENA]
¢þ
>WENV182818028
OJZN01002876
[OJZN] human gut metagenome; human gut
1017
1104
+
Leu
GAG
[ENA]
¢þ
>WENV182818015
OJZN01000985
[OJZN] human gut metagenome; human gut
1030
1103
+
Gly
CCC
[ENA]
¢þ
>WENV182817968
OJZN01000107
[OJZN] human gut metagenome; human gut
1043
1113
+
Cys
GCA
[ENA]
¢þ
>WENV182817969
OJZN01000107
[OJZN] human gut metagenome; human gut
1126
1211
+
Leu
CAA
[ENA]
¢þ
>WENV182818014
OJZN01000962
[OJZN] human gut metagenome; human gut
1232
1158
-
Arg
CCT
[ENA]
¢þ
>WENV182817983
OJZN01000254
[OJZN] human gut metagenome; human gut
1233
1309
+
Pro
GGG
[ENA]
¢þ
>WENV182818018
OJZN01001189
[OJZN] human gut metagenome; human gut
1361
1437
+
Val
GAC
[ENA]
¢þ
>WENV182818019
OJZN01001189
[OJZN] human gut metagenome; human gut
1442
1518
+
Val
GAC
[ENA]
¢þ
>WENV182818022
OJZN01001419
[OJZN] human gut metagenome; human gut
1487
1574
+
Ser
TGA
[ENA]
¢þ
>WENV182818023
OJZN01001743
[OJZN] human gut metagenome; human gut
1672
1597
-
Ile2
CAT
[ENA]
¢þ
>WENV182818017
OJZN01001104
[OJZN] human gut metagenome; human gut
1792
1868
+
Pro
GGG
[ENA]
¢þ
>WENV182818024
OJZN01001987
[OJZN] human gut metagenome; human gut
1995
1919
-
Ile
GAT
[ENA]
¢þ
>WENV182817971
OJZN01000132
[OJZN] human gut metagenome; human gut
2084
2178
+
SeC
TCA
[ENA]
¢þ
>WENV182818010
OJZN01000816
[OJZN] human gut metagenome; human gut
2293
2217
-
Pro
GGG
[ENA]
¢þ
>WENV182817996
OJZN01000560
[OJZN] human gut metagenome; human gut
2323
2398
+
Asn
GTT
[ENA]
¢þ
>WENV182817994
OJZN01000525
[OJZN] human gut metagenome; human gut
2444
2519
+
Asn
GTT
[ENA]
¢þ
>WENV182818008
OJZN01000803
[OJZN] human gut metagenome; human gut
2864
2939
+
Ala
GGC
[ENA]
¢þ
>WENV182818016
OJZN01001034
[OJZN] human gut metagenome; human gut
2889
2814
-
Arg
TCT
[ENA]
¢þ
>WENV182817984
OJZN01000264
[OJZN] human gut metagenome; human gut
3335
3407
+
Arg
CCT
[ENA]
¢þ
>WENV182817975
OJZN01000193
[OJZN] human gut metagenome; human gut
3397
3469
+
Arg
CCT
[ENA]
¢þ
>WENV182818013
OJZN01000914
[OJZN] human gut metagenome; human gut
3433
3358
-
Asn
GTT
[ENA]
¢þ
>WENV182818006
OJZN01000718
[OJZN] human gut metagenome; human gut
3747
3822
+
Thr
CGT
[ENA]
¢þ
>WENV182817953
OJZN01000049
[OJZN] human gut metagenome; human gut
3798
3722
-
Val
GAC
[ENA]
¢þ
>WENV182817952
OJZN01000049
[OJZN] human gut metagenome; human gut
3879
3803
-
Val
GAC
[ENA]
¢þ
>WENV182817993
OJZN01000492
[OJZN] human gut metagenome; human gut
4151
4224
+
Arg
CCG
[ENA]
¢þ
>WENV182818012
OJZN01000875
[OJZN] human gut metagenome; human gut
4983
5070
+
Ser
GGA
[ENA]
¢þ
>WENV182817997
OJZN01000569
[OJZN] human gut metagenome; human gut
5191
5267
+
Met
CAT
[ENA]
¢þ
>WENV182817998
OJZN01000569
[OJZN] human gut metagenome; human gut
5276
5360
+
Leu
TAG
[ENA]
¢þ
>WENV182818005
OJZN01000717
[OJZN] human gut metagenome; human gut
5358
5283
-
Asn
GTT
[ENA]
¢þ
>WENV182817999
OJZN01000569
[OJZN] human gut metagenome; human gut
5384
5458
+
Gln
TTG
[ENA]
¢þ
>WENV182818000
OJZN01000569
[OJZN] human gut metagenome; human gut
5491
5565
+
Gln
TTG
[ENA]
¢þ
>WENV182818004
OJZN01000648
[OJZN] human gut metagenome; human gut
5571
5485
-
Ile
GAT
[ENA]
¢þ
>WENV182818001
OJZN01000569
[OJZN] human gut metagenome; human gut
5583
5659
+
Met
CAT
[ENA]
¢þ
>WENV182818002
OJZN01000569
[OJZN] human gut metagenome; human gut
5701
5775
+
Gln
CTG
[ENA]
¢þ
>WENV182818003
OJZN01000569
[OJZN] human gut metagenome; human gut
5810
5884
+
Gln
CTG
[ENA]
¢þ
>WENV182817990
OJZN01000460
[OJZN] human gut metagenome; human gut
6038
5963
-
Asn
GTT
[ENA]
¢þ
>WENV182817992
OJZN01000469
[OJZN] human gut metagenome; human gut
6575
6499
-
Arg
TCT
[ENA]
¢þ
>WENV182817991
OJZN01000462
[OJZN] human gut metagenome; human gut
6764
6688
-
Arg
TCT
[ENA]
¢þ
>WENV182817974
OJZN01000184
[OJZN] human gut metagenome; human gut
7012
6937
-
Phe
GAA
[ENA]
¢þ
>WENV182817973
OJZN01000181
[OJZN] human gut metagenome; human gut
7042
6958
-
Tyr
GTA
[ENA]
¢þ
>WENV182817972
OJZN01000181
[OJZN] human gut metagenome; human gut
7161
7077
-
Tyr
GTA
[ENA]
¢þ
>WENV182817988
OJZN01000366
[OJZN] human gut metagenome; human gut
8440
8512
+
Thr
CGT
[ENA]
¢þ
>WENV182817987
OJZN01000320
[OJZN] human gut metagenome; human gut
8640
8567
-
Gly
CCC
[ENA]
¢þ
>WENV182817956
OJZN01000091
[OJZN] human gut metagenome; human gut
9206
9282
+
Arg
TCT
[ENA]
¢þ
>WENV182817985
OJZN01000278
[OJZN] human gut metagenome; human gut
9247
9323
+
Arg
TCT
[ENA]
¢þ
>WENV182817946
OJZN01000012
[OJZN] human gut metagenome; human gut
12247
12158
-
Ser
CGA
[ENA]
¢þ
>WENV182817957
OJZN01000106
[OJZN] human gut metagenome; human gut
13748
13824
+
Pro
TGG
[ENA]
¢þ
>WENV182817954
OJZN01000059
[OJZN] human gut metagenome; human gut
15265
15352
+
Ser
TGA
[ENA]
¢þ
>WENV182817949
OJZN01000046
[OJZN] human gut metagenome; human gut
20096
20171
+
Asn
GTT
[ENA]
¢þ
>WENV182817955
OJZN01000059
[OJZN] human gut metagenome; human gut
21700
21787
+
Ser
TGA
[ENA]
¢þ
>WENV182817944
OJZN01000007
[OJZN] human gut metagenome; human gut
22813
22886
+
Thr
CGT
[ENA]
¢þ
>WENV182817951
OJZN01000047
[OJZN] human gut metagenome; human gut
25210
25137
-
Gly
CCC
[ENA]
¢þ
>WENV182817948
OJZN01000042
[OJZN] human gut metagenome; human gut
25752
25677
-
Arg
TCT
[ENA]
¢þ
>WENV182817947
OJZN01000042
[OJZN] human gut metagenome; human gut
25830
25756
-
Asn
GTT
[ENA]
¢þ
>WENV182817950
OJZN01000046
[OJZN] human gut metagenome; human gut
26154
26079
-
Asn
GTT
[ENA]
¢þ
>WENV182817943
OJZN01000003
[OJZN] human gut metagenome; human gut
42370
42296
-
Gly
TCC
[ENA]
¢þ
>WENV182817942
OJZN01000003
[OJZN] human gut metagenome; human gut
42448
42372
-
Arg
CCG
[ENA]
¢þ
>WENV182817941
OJZN01000003
[OJZN] human gut metagenome; human gut
42525
42450
-
Thr
TGT
[ENA]
¢þ
>WENV182817940
OJZN01000003
[OJZN] human gut metagenome; human gut
42679
42604
-
Ile2
CAT
[ENA]
¢þ
>WENV182817945
OJZN01000010
[OJZN] human gut metagenome; human gut
42708
42780
+
Thr
GGT
[ENA]
¢þ
>WENV182817939
OJZN01000001
[OJZN] human gut metagenome; human gut
46600
46675
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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