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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJZU] human gut metagenome; human gut
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182818466
OJZU01000012
[OJZU] human gut metagenome; human gut
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV182818498
OJZU01000093
[OJZU] human gut metagenome; human gut
79
4
-
Val
TAC
[ENA]
¢þ
>WENV182818477
OJZU01000027
[OJZU] human gut metagenome; human gut
87
171
+
Tyr
GTA
[ENA]
¢þ
>WENV182818490
OJZU01000063
[OJZU] human gut metagenome; human gut
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV182818497
OJZU01000093
[OJZU] human gut metagenome; human gut
198
123
-
Val
TAC
[ENA]
¢þ
>WENV182818494
OJZU01000087
[OJZU] human gut metagenome; human gut
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182818493
OJZU01000087
[OJZU] human gut metagenome; human gut
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182818492
OJZU01000087
[OJZU] human gut metagenome; human gut
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182818491
OJZU01000087
[OJZU] human gut metagenome; human gut
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182818502
OJZU01000187
[OJZU] human gut metagenome; human gut
862
937
+
Glu
TTC
[ENA]
¢þ
>WENV182818499
OJZU01000130
[OJZU] human gut metagenome; human gut
1211
1284
+
Asn
GTT
[ENA]
¢þ
>WENV182818487
OJZU01000050
[OJZU] human gut metagenome; human gut
1212
1137
-
Thr
CGT
[ENA]
¢þ
>WENV182818500
OJZU01000130
[OJZU] human gut metagenome; human gut
1327
1417
+
Ser
GGA
[ENA]
¢þ
>WENV182818501
OJZU01000130
[OJZU] human gut metagenome; human gut
1433
1506
+
Glu
TTC
[ENA]
¢þ
>WENV182818495
OJZU01000093
[OJZU] human gut metagenome; human gut
2897
2972
+
Ala
GGC
[ENA]
¢þ
>WENV182818496
OJZU01000093
[OJZU] human gut metagenome; human gut
3012
3087
+
Ala
GGC
[ENA]
¢þ
>WENV182818489
OJZU01000061
[OJZU] human gut metagenome; human gut
3013
2937
-
Asp
GTC
[ENA]
¢þ
>WENV182818449
OJZU01000005
[OJZU] human gut metagenome; human gut
4760
4836
+
fMet
CAT
[ENA]
¢þ
>WENV182818488
OJZU01000054
[OJZU] human gut metagenome; human gut
5196
5120
-
Arg
TCT
[ENA]
¢þ
>WENV182818444
OJZU01000001
[OJZU] human gut metagenome; human gut
10868
10794
-
Arg
CCT
[ENA]
¢þ
>WENV182818458
OJZU01000009
[OJZU] human gut metagenome; human gut
13615
13531
-
Leu
CAA
[ENA]
¢þ
>WENV182818475
OJZU01000025
[OJZU] human gut metagenome; human gut
15723
15629
-
SeC
TCA
[ENA]
¢þ
>WENV182818459
OJZU01000010
[OJZU] human gut metagenome; human gut
21744
21831
+
Ser
TGA
[ENA]
¢þ
>WENV182818446
OJZU01000003
[OJZU] human gut metagenome; human gut
31949
32024
+
Ile2
CAT
[ENA]
¢þ
>WENV182818471
OJZU01000016
[OJZU] human gut metagenome; human gut
33173
33249
+
Val
GAC
[ENA]
¢þ
>WENV182818472
OJZU01000016
[OJZU] human gut metagenome; human gut
33254
33330
+
Val
GAC
[ENA]
¢þ
>WENV182818467
OJZU01000012
[OJZU] human gut metagenome; human gut
34607
34683
+
Arg
CCG
[ENA]
¢þ
>WENV182818468
OJZU01000012
[OJZU] human gut metagenome; human gut
34742
34817
+
His
GTG
[ENA]
¢þ
>WENV182818469
OJZU01000012
[OJZU] human gut metagenome; human gut
34838
34924
+
Leu
CAG
[ENA]
¢þ
>WENV182818470
OJZU01000012
[OJZU] human gut metagenome; human gut
34967
35043
+
Pro
TGG
[ENA]
¢þ
>WENV182818480
OJZU01000032
[OJZU] human gut metagenome; human gut
54229
54305
+
Met
CAT
[ENA]
¢þ
>WENV182818473
OJZU01000019
[OJZU] human gut metagenome; human gut
54239
54315
+
Pro
CGG
[ENA]
¢þ
>WENV182818481
OJZU01000032
[OJZU] human gut metagenome; human gut
54316
54400
+
Leu
TAG
[ENA]
¢þ
>WENV182818482
OJZU01000032
[OJZU] human gut metagenome; human gut
54424
54498
+
Gln
TTG
[ENA]
¢þ
>WENV182818483
OJZU01000032
[OJZU] human gut metagenome; human gut
54533
54607
+
Gln
TTG
[ENA]
¢þ
>WENV182818484
OJZU01000032
[OJZU] human gut metagenome; human gut
54623
54699
+
Met
CAT
[ENA]
¢þ
>WENV182818485
OJZU01000032
[OJZU] human gut metagenome; human gut
54748
54822
+
Gln
CTG
[ENA]
¢þ
>WENV182818486
OJZU01000032
[OJZU] human gut metagenome; human gut
54860
54934
+
Gln
CTG
[ENA]
¢þ
>WENV182818479
OJZU01000031
[OJZU] human gut metagenome; human gut
58074
57998
-
Arg
ACG
[ENA]
¢þ
>WENV182818478
OJZU01000031
[OJZU] human gut metagenome; human gut
58213
58137
-
Arg
ACG
[ENA]
¢þ
>WENV182818456
OJZU01000007
[OJZU] human gut metagenome; human gut
65202
65116
-
Leu
CAG
[ENA]
¢þ
>WENV182818455
OJZU01000007
[OJZU] human gut metagenome; human gut
65561
65475
-
Leu
CAG
[ENA]
¢þ
>WENV182818465
OJZU01000011
[OJZU] human gut metagenome; human gut
65816
65741
-
Asn
GTT
[ENA]
¢þ
>WENV182818461
OJZU01000011
[OJZU] human gut metagenome; human gut
67565
67640
+
Asn
GTT
[ENA]
¢þ
>WENV182818476
OJZU01000026
[OJZU] human gut metagenome; human gut
69244
69328
+
Tyr
GTA
[ENA]
¢þ
>WENV182818474
OJZU01000024
[OJZU] human gut metagenome; human gut
69596
69521
-
Phe
GAA
[ENA]
¢þ
>WENV182818462
OJZU01000011
[OJZU] human gut metagenome; human gut
69974
70049
+
Asn
GTT
[ENA]
¢þ
>WENV182818451
OJZU01000005
[OJZU] human gut metagenome; human gut
77239
77166
-
Gly
CCC
[ENA]
¢þ
>WENV182818464
OJZU01000011
[OJZU] human gut metagenome; human gut
109939
109864
-
Asn
GTT
[ENA]
¢þ
>WENV182818463
OJZU01000011
[OJZU] human gut metagenome; human gut
110931
111020
+
Ser
CGA
[ENA]
¢þ
>WENV182818460
OJZU01000010
[OJZU] human gut metagenome; human gut
117143
117230
+
Ser
GGA
[ENA]
¢þ
>WENV182818448
OJZU01000003
[OJZU] human gut metagenome; human gut
127675
127599
-
fMet
CAT
[ENA]
¢þ
>WENV182818447
OJZU01000003
[OJZU] human gut metagenome; human gut
131542
131456
-
Leu
GAG
[ENA]
¢þ
>WENV182818457
OJZU01000008
[OJZU] human gut metagenome; human gut
162848
162935
+
Ser
GGA
[ENA]
¢þ
>WENV182818454
OJZU01000006
[OJZU] human gut metagenome; human gut
163837
163751
-
Leu
TAA
[ENA]
¢þ
>WENV182818453
OJZU01000006
[OJZU] human gut metagenome; human gut
163923
163850
-
Cys
GCA
[ENA]
¢þ
>WENV182818452
OJZU01000006
[OJZU] human gut metagenome; human gut
164052
163977
-
Gly
GCC
[ENA]
¢þ
>WENV182818445
OJZU01000002
[OJZU] human gut metagenome; human gut
167910
167986
+
Arg
TCT
[ENA]
¢þ
>WENV182818443
OJZU01000001
[OJZU] human gut metagenome; human gut
180845
180769
-
Pro
GGG
[ENA]
¢þ
>WENV182818450
OJZU01000005
[OJZU] human gut metagenome; human gut
187259
187334
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK