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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJZW] human gut metagenome; human gut
HIT:
79 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182818617
OJZW01001198
[OJZW] human gut metagenome; human gut
1
72
+
Glu
TTC
[ENA]
¢þ
>WENV182818606
OJZW01000680
[OJZW] human gut metagenome; human gut
70
155
+
Leu
TAA
[ENA]
¢þ
>WENV182818599
OJZW01000410
[OJZW] human gut metagenome; human gut
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV182818601
OJZW01000498
[OJZW] human gut metagenome; human gut
90
1
-
Ser
GCT
[ENA]
¢þ
>WENV182818598
OJZW01000410
[OJZW] human gut metagenome; human gut
156
81
-
Thr
TGT
[ENA]
¢þ
>WENV182818607
OJZW01000680
[OJZW] human gut metagenome; human gut
167
240
+
Arg
ACG
[ENA]
¢þ
>WENV182818615
OJZW01000838
[OJZW] human gut metagenome; human gut
202
129
-
Arg
TCT
[ENA]
¢þ
>WENV182818597
OJZW01000410
[OJZW] human gut metagenome; human gut
238
163
-
Val
TAC
[ENA]
¢þ
>WENV182818600
OJZW01000416
[OJZW] human gut metagenome; human gut
240
312
+
Cys
GCA
[ENA]
¢þ
>WENV182818608
OJZW01000680
[OJZW] human gut metagenome; human gut
256
329
+
Pro
TGG
[ENA]
¢þ
>WENV182818596
OJZW01000410
[OJZW] human gut metagenome; human gut
316
245
-
Glu
TTC
[ENA]
¢þ
>WENV182818620
OJZW01002017
[OJZW] human gut metagenome; human gut
321
406
+
Leu
AAG
[ENA]
¢þ
>WENV182818616
OJZW01001177
[OJZW] human gut metagenome; human gut
707
634
-
Asn
GTT
[ENA]
¢þ
>WENV182818605
OJZW01000664
[OJZW] human gut metagenome; human gut
767
840
+
Gly
CCC
[ENA]
¢þ
>WENV182818590
OJZW01000239
[OJZW] human gut metagenome; human gut
913
987
+
Ala
TGC
[ENA]
¢þ
>WENV182818619
OJZW01001320
[OJZW] human gut metagenome; human gut
931
1003
+
Thr
GGT
[ENA]
¢þ
>WENV182818618
OJZW01001238
[OJZW] human gut metagenome; human gut
1007
1079
+
Thr
CGT
[ENA]
¢þ
>WENV182818566
OJZW01000034
[OJZW] human gut metagenome; human gut
1043
967
-
Pro
CGG
[ENA]
¢þ
>WENV182818604
OJZW01000572
[OJZW] human gut metagenome; human gut
1350
1261
-
Ser
GGA
[ENA]
¢þ
>WENV182818556
OJZW01000015
[OJZW] human gut metagenome; human gut
1787
1862
+
Arg
TCT
[ENA]
¢þ
>WENV182818614
OJZW01000693
[OJZW] human gut metagenome; human gut
1933
1861
-
Ala
TGC
[ENA]
¢þ
>WENV182818613
OJZW01000693
[OJZW] human gut metagenome; human gut
2021
1947
-
Pro
TGG
[ENA]
¢þ
>WENV182818612
OJZW01000693
[OJZW] human gut metagenome; human gut
2124
2048
-
Arg
ACG
[ENA]
¢þ
>WENV182818560
OJZW01000027
[OJZW] human gut metagenome; human gut
2125
2044
-
Tyr
GTA
[ENA]
¢þ
>WENV182818611
OJZW01000693
[OJZW] human gut metagenome; human gut
2225
2137
-
Leu
TAA
[ENA]
¢þ
>WENV182818610
OJZW01000693
[OJZW] human gut metagenome; human gut
2311
2237
-
Gly
GCC
[ENA]
¢þ
>WENV182818609
OJZW01000693
[OJZW] human gut metagenome; human gut
2397
2315
-
Leu
TAG
[ENA]
¢þ
>WENV182818603
OJZW01000571
[OJZW] human gut metagenome; human gut
2431
2358
-
Lys
CTT
[ENA]
¢þ
>WENV182818587
OJZW01000155
[OJZW] human gut metagenome; human gut
3000
2926
-
Leu
TAA
[ENA]
¢þ
>WENV182818602
OJZW01000526
[OJZW] human gut metagenome; human gut
3096
3169
+
Arg
CCG
[ENA]
¢þ
>WENV182818593
OJZW01000273
[OJZW] human gut metagenome; human gut
3584
3666
+
Tyr
GTA
[ENA]
¢þ
>WENV182818594
OJZW01000273
[OJZW] human gut metagenome; human gut
3674
3745
+
Gln
TTG
[ENA]
¢þ
>WENV182818561
OJZW01000030
[OJZW] human gut metagenome; human gut
4010
4100
+
Ser
GCT
[ENA]
¢þ
>WENV182818595
OJZW01000401
[OJZW] human gut metagenome; human gut
4088
4013
-
His
GTG
[ENA]
¢þ
>WENV182818580
OJZW01000059
[OJZW] human gut metagenome; human gut
4316
4233
-
Leu
TAG
[ENA]
¢þ
>WENV182818562
OJZW01000030
[OJZW] human gut metagenome; human gut
4330
4403
+
Arg
ACG
[ENA]
¢þ
>WENV182818592
OJZW01000241
[OJZW] human gut metagenome; human gut
4396
4306
-
Ser
GCT
[ENA]
¢þ
>WENV182818591
OJZW01000241
[OJZW] human gut metagenome; human gut
4473
4399
-
Asn
GTT
[ENA]
¢þ
>WENV182818588
OJZW01000168
[OJZW] human gut metagenome; human gut
4524
4449
-
Thr
CGT
[ENA]
¢þ
>WENV182818589
OJZW01000223
[OJZW] human gut metagenome; human gut
4547
4474
-
Ala
GGC
[ENA]
¢þ
>WENV182818583
OJZW01000081
[OJZW] human gut metagenome; human gut
5093
5165
+
Arg
CCG
[ENA]
¢þ
>WENV182818584
OJZW01000082
[OJZW] human gut metagenome; human gut
5424
5497
+
fMet
CAT
[ENA]
¢þ
>WENV182818585
OJZW01000082
[OJZW] human gut metagenome; human gut
5512
5584
+
Asp
GTC
[ENA]
¢þ
>WENV182818575
OJZW01000055
[OJZW] human gut metagenome; human gut
8336
8418
+
Tyr
GTA
[ENA]
¢þ
>WENV182818573
OJZW01000050
[OJZW] human gut metagenome; human gut
8420
8347
-
Arg
CCT
[ENA]
¢þ
>WENV182818576
OJZW01000055
[OJZW] human gut metagenome; human gut
8619
8692
+
Thr
GGT
[ENA]
¢þ
>WENV182818577
OJZW01000055
[OJZW] human gut metagenome; human gut
8757
8831
+
Met
CAT
[ENA]
¢þ
>WENV182818582
OJZW01000078
[OJZW] human gut metagenome; human gut
9239
9318
+
Gln
TTG
[ENA]
¢þ
>WENV182818586
OJZW01000102
[OJZW] human gut metagenome; human gut
9239
9331
+
Ser
TGA
[ENA]
¢þ
>WENV182818579
OJZW01000059
[OJZW] human gut metagenome; human gut
9252
9178
-
Lys
CTT
[ENA]
¢þ
>WENV182818559
OJZW01000026
[OJZW] human gut metagenome; human gut
10507
10580
+
Gly
TCC
[ENA]
¢þ
>WENV182818550
OJZW01000008
[OJZW] human gut metagenome; human gut
11820
11892
+
Gln
CTG
[ENA]
¢þ
>WENV182818551
OJZW01000008
[OJZW] human gut metagenome; human gut
12028
12103
+
Glu
CTC
[ENA]
¢þ
>WENV182818549
OJZW01000007
[OJZW] human gut metagenome; human gut
12139
12215
+
fMet
CAT
[ENA]
¢þ
>WENV182818563
OJZW01000030
[OJZW] human gut metagenome; human gut
12584
12671
+
Ser
CGA
[ENA]
¢þ
>WENV182818578
OJZW01000055
[OJZW] human gut metagenome; human gut
12823
12896
+
Trp
CCA
[ENA]
¢þ
>WENV182818574
OJZW01000054
[OJZW] human gut metagenome; human gut
13167
13241
+
Ile
GAT
[ENA]
¢þ
>WENV182818581
OJZW01000077
[OJZW] human gut metagenome; human gut
13655
13584
-
Arg
CCG
[ENA]
¢þ
>WENV182818571
OJZW01000036
[OJZW] human gut metagenome; human gut
14315
14240
-
Phe
GAA
[ENA]
¢þ
>WENV182818570
OJZW01000036
[OJZW] human gut metagenome; human gut
14450
14376
-
Asp
GTC
[ENA]
¢þ
>WENV182818569
OJZW01000036
[OJZW] human gut metagenome; human gut
14936
14862
-
Glu
TTC
[ENA]
¢þ
>WENV182818558
OJZW01000022
[OJZW] human gut metagenome; human gut
15150
15224
+
Arg
TCT
[ENA]
¢þ
>WENV182818565
OJZW01000034
[OJZW] human gut metagenome; human gut
15420
15337
-
Leu
CAG
[ENA]
¢þ
>WENV182818572
OJZW01000050
[OJZW] human gut metagenome; human gut
15930
16003
+
Ala
CGC
[ENA]
¢þ
>WENV182818568
OJZW01000036
[OJZW] human gut metagenome; human gut
16749
16823
+
Lys
TTT
[ENA]
¢þ
>WENV182818554
OJZW01000011
[OJZW] human gut metagenome; human gut
19235
19322
+
Leu
GAG
[ENA]
¢þ
>WENV182818552
OJZW01000008
[OJZW] human gut metagenome; human gut
21695
21621
-
Val
TAC
[ENA]
¢þ
>WENV182818567
OJZW01000035
[OJZW] human gut metagenome; human gut
25333
25418
+
Ser
TGA
[ENA]
¢þ
>WENV182818564
OJZW01000032
[OJZW] human gut metagenome; human gut
28600
28684
+
Leu
CAA
[ENA]
¢þ
>WENV182818557
OJZW01000015
[OJZW] human gut metagenome; human gut
34413
34488
+
Pro
TGG
[ENA]
¢þ
>WENV182818555
OJZW01000012
[OJZW] human gut metagenome; human gut
40321
40247
-
Pro
GGG
[ENA]
¢þ
>WENV182818548
OJZW01000006
[OJZW] human gut metagenome; human gut
48473
48558
+
Ser
GGA
[ENA]
¢þ
>WENV182818553
OJZW01000009
[OJZW] human gut metagenome; human gut
51879
51954
+
Thr
TGT
[ENA]
¢þ
>WENV182818547
OJZW01000001
[OJZW] human gut metagenome; human gut
103831
103757
-
Val
CAC
[ENA]
¢þ
>WENV182818542
OJZW01000001
[OJZW] human gut metagenome; human gut
104210
104283
+
Gly
GCC
[ENA]
¢þ
>WENV182818543
OJZW01000001
[OJZW] human gut metagenome; human gut
104311
104382
+
Cys
GCA
[ENA]
¢þ
>WENV182818544
OJZW01000001
[OJZW] human gut metagenome; human gut
104383
104455
+
Val
GAC
[ENA]
¢þ
>WENV182818546
OJZW01000001
[OJZW] human gut metagenome; human gut
216041
215967
-
Ile2
CAT
[ENA]
¢þ
>WENV182818545
OJZW01000001
[OJZW] human gut metagenome; human gut
228544
228471
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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