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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKAC] human gut metagenome; human gut
HIT:
145 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182819448
OKAC01001477
[OKAC] human gut metagenome; human gut
74
1
-
Gly
CCC
[ENA]
¢þ
>WENV182819381
OKAC01000094
[OKAC] human gut metagenome; human gut
84
158
+
Arg
ACG
[ENA]
¢þ
>WENV182819422
OKAC01000599
[OKAC] human gut metagenome; human gut
92
20
-
Thr
CGT
[ENA]
¢þ
>WENV182819452
OKAC01001569
[OKAC] human gut metagenome; human gut
130
202
+
Ala
TGC
[ENA]
¢þ
>WENV182819441
OKAC01001013
[OKAC] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182819445
OKAC01001131
[OKAC] human gut metagenome; human gut
171
96
-
Ala
GGC
[ENA]
¢þ
>WENV182819408
OKAC01000382
[OKAC] human gut metagenome; human gut
172
87
-
Leu
CAG
[ENA]
¢þ
>WENV182819358
OKAC01000056
[OKAC] human gut metagenome; human gut
173
89
-
Tyr
GTA
[ENA]
¢þ
>WENV182819405
OKAC01000362
[OKAC] human gut metagenome; human gut
204
128
-
Arg
TCT
[ENA]
¢þ
>WENV182819467
OKAC01004524
[OKAC] human gut metagenome; human gut
234
310
+
Ile
GAT
[ENA]
¢þ
>WENV182819407
OKAC01000382
[OKAC] human gut metagenome; human gut
287
201
-
Leu
CAG
[ENA]
¢þ
>WENV182819404
OKAC01000362
[OKAC] human gut metagenome; human gut
294
218
-
Arg
TCG
[ENA]
¢þ
>WENV182819341
OKAC01000010
[OKAC] human gut metagenome; human gut
315
241
-
Gln
CTG
[ENA]
¢þ
>WENV182819403
OKAC01000362
[OKAC] human gut metagenome; human gut
377
302
-
Ile2
CAT
[ENA]
¢þ
>WENV182819468
OKAC01004524
[OKAC] human gut metagenome; human gut
416
491
+
Ala
TGC
[ENA]
¢þ
>WENV182819340
OKAC01000010
[OKAC] human gut metagenome; human gut
427
354
-
Glu
CTC
[ENA]
¢þ
>WENV182819465
OKAC01002875
[OKAC] human gut metagenome; human gut
487
416
-
Trp
CCA
[ENA]
¢þ
>WENV182819400
OKAC01000280
[OKAC] human gut metagenome; human gut
568
474
-
SeC
TCA
[ENA]
¢þ
>WENV182819362
OKAC01000062
[OKAC] human gut metagenome; human gut
571
645
+
fMet
CAT
[ENA]
¢þ
>WENV182819447
OKAC01001379
[OKAC] human gut metagenome; human gut
601
674
+
Ile2
CAT
[ENA]
¢þ
>WENV182819463
OKAC01001901
[OKAC] human gut metagenome; human gut
608
683
+
Ile2
CAT
[ENA]
¢þ
>WENV182819466
OKAC01002984
[OKAC] human gut metagenome; human gut
625
701
+
Pro
CGG
[ENA]
¢þ
>WENV182819464
OKAC01002468
[OKAC] human gut metagenome; human gut
647
571
-
Asp
GTC
[ENA]
¢þ
>WENV182819469
OKAC01004821
[OKAC] human gut metagenome; human gut
656
580
-
Ile2
CAT
[ENA]
¢þ
>WENV182819409
OKAC01000384
[OKAC] human gut metagenome; human gut
661
736
+
Asn
GTT
[ENA]
¢þ
>WENV182819363
OKAC01000062
[OKAC] human gut metagenome; human gut
692
767
+
Asp
GTC
[ENA]
¢þ
>WENV182819453
OKAC01001626
[OKAC] human gut metagenome; human gut
760
848
+
Leu
TAA
[ENA]
¢þ
>WENV182819359
OKAC01000059
[OKAC] human gut metagenome; human gut
764
839
+
Arg
CCG
[ENA]
¢þ
>WENV182819364
OKAC01000062
[OKAC] human gut metagenome; human gut
771
848
+
Phe
GAA
[ENA]
¢þ
>WENV182819454
OKAC01001626
[OKAC] human gut metagenome; human gut
853
929
+
fMet
CAT
[ENA]
¢þ
>WENV182819365
OKAC01000062
[OKAC] human gut metagenome; human gut
859
929
+
Gly
TCC
[ENA]
¢þ
>WENV182819455
OKAC01001626
[OKAC] human gut metagenome; human gut
933
1009
+
Met
CAT
[ENA]
¢þ
>WENV182819366
OKAC01000062
[OKAC] human gut metagenome; human gut
943
1016
+
Ile
GAT
[ENA]
¢þ
>WENV182819420
OKAC01000490
[OKAC] human gut metagenome; human gut
1006
1095
+
Ser
CGA
[ENA]
¢þ
>WENV182819415
OKAC01000446
[OKAC] human gut metagenome; human gut
1020
947
-
Ile2
CAT
[ENA]
¢þ
>WENV182819367
OKAC01000062
[OKAC] human gut metagenome; human gut
1026
1115
+
Ser
GCT
[ENA]
¢þ
>WENV182819406
OKAC01000369
[OKAC] human gut metagenome; human gut
1046
1119
+
Gly
TCC
[ENA]
¢þ
>WENV182819456
OKAC01001626
[OKAC] human gut metagenome; human gut
1054
1128
+
Glu
CTC
[ENA]
¢þ
>WENV182819368
OKAC01000062
[OKAC] human gut metagenome; human gut
1129
1202
+
Glu
TTC
[ENA]
¢þ
>WENV182819412
OKAC01000410
[OKAC] human gut metagenome; human gut
1254
1329
+
Thr
CGT
[ENA]
¢þ
>WENV182819457
OKAC01001626
[OKAC] human gut metagenome; human gut
1428
1502
+
Glu
TTC
[ENA]
¢þ
>WENV182819458
OKAC01001626
[OKAC] human gut metagenome; human gut
1673
1748
+
Val
TAC
[ENA]
¢þ
>WENV182819425
OKAC01000676
[OKAC] human gut metagenome; human gut
1731
1805
+
Asn
GTT
[ENA]
¢þ
>WENV182819462
OKAC01001810
[OKAC] human gut metagenome; human gut
1740
1664
-
Arg
TCT
[ENA]
¢þ
>WENV182819459
OKAC01001626
[OKAC] human gut metagenome; human gut
1781
1857
+
Asp
GTC
[ENA]
¢þ
>WENV182819426
OKAC01000676
[OKAC] human gut metagenome; human gut
1811
1886
+
Thr
TGT
[ENA]
¢þ
>WENV182819460
OKAC01001626
[OKAC] human gut metagenome; human gut
1884
1959
+
Thr
TGT
[ENA]
¢þ
>WENV182819414
OKAC01000434
[OKAC] human gut metagenome; human gut
1941
1855
-
Leu
GAG
[ENA]
¢þ
>WENV182819423
OKAC01000655
[OKAC] human gut metagenome; human gut
1977
2063
+
Leu
GAG
[ENA]
¢þ
>WENV182819418
OKAC01000478
[OKAC] human gut metagenome; human gut
1996
1921
-
Arg
CCT
[ENA]
¢þ
>WENV182819449
OKAC01001495
[OKAC] human gut metagenome; human gut
2032
2105
+
Thr
CGT
[ENA]
¢þ
>WENV182819461
OKAC01001626
[OKAC] human gut metagenome; human gut
2032
2117
+
Tyr
GTA
[ENA]
¢þ
>WENV182819450
OKAC01001495
[OKAC] human gut metagenome; human gut
2192
2274
+
Leu
TAG
[ENA]
¢þ
>WENV182819451
OKAC01001505
[OKAC] human gut metagenome; human gut
2266
2191
-
Ala
TGC
[ENA]
¢þ
>WENV182819440
OKAC01000965
[OKAC] human gut metagenome; human gut
2451
2378
-
Arg
CCG
[ENA]
¢þ
>WENV182819379
OKAC01000092
[OKAC] human gut metagenome; human gut
2549
2621
+
Glu
TTC
[ENA]
¢þ
>WENV182819446
OKAC01001357
[OKAC] human gut metagenome; human gut
2604
2678
+
Arg
ACG
[ENA]
¢þ
>WENV182819393
OKAC01000215
[OKAC] human gut metagenome; human gut
2748
2821
+
Gly
CCC
[ENA]
¢þ
>WENV182819442
OKAC01001131
[OKAC] human gut metagenome; human gut
2865
2940
+
Val
TAC
[ENA]
¢þ
>WENV182819443
OKAC01001131
[OKAC] human gut metagenome; human gut
2982
3057
+
Val
TAC
[ENA]
¢þ
>WENV182819346
OKAC01000021
[OKAC] human gut metagenome; human gut
2983
2908
-
Trp
CCA
[ENA]
¢þ
>WENV182819444
OKAC01001131
[OKAC] human gut metagenome; human gut
3087
3162
+
Val
TAC
[ENA]
¢þ
>WENV182819392
OKAC01000195
[OKAC] human gut metagenome; human gut
3491
3415
-
Pro
TGG
[ENA]
¢þ
>WENV182819427
OKAC01000685
[OKAC] human gut metagenome; human gut
3745
3669
-
Pro
GGG
[ENA]
¢þ
>WENV182819436
OKAC01000741
[OKAC] human gut metagenome; human gut
3924
3839
-
Leu
CAA
[ENA]
¢þ
>WENV182819336
OKAC01000007
[OKAC] human gut metagenome; human gut
3946
4019
+
Lys
TTT
[ENA]
¢þ
>WENV182819435
OKAC01000741
[OKAC] human gut metagenome; human gut
4007
3937
-
Cys
GCA
[ENA]
¢þ
>WENV182819434
OKAC01000741
[OKAC] human gut metagenome; human gut
4105
4032
-
Gln
TTG
[ENA]
¢þ
>WENV182819433
OKAC01000741
[OKAC] human gut metagenome; human gut
4191
4118
-
His
GTG
[ENA]
¢þ
>WENV182819437
OKAC01000765
[OKAC] human gut metagenome; human gut
4263
4338
+
Thr
TGT
[ENA]
¢þ
>WENV182819432
OKAC01000741
[OKAC] human gut metagenome; human gut
4301
4228
-
Trp
CCA
[ENA]
¢þ
>WENV182819402
OKAC01000350
[OKAC] human gut metagenome; human gut
4302
4375
+
Thr
GGT
[ENA]
¢þ
>WENV182819438
OKAC01000765
[OKAC] human gut metagenome; human gut
4347
4431
+
Tyr
GTA
[ENA]
¢þ
>WENV182819431
OKAC01000741
[OKAC] human gut metagenome; human gut
4387
4305
-
Tyr
GTA
[ENA]
¢þ
>WENV182819421
OKAC01000551
[OKAC] human gut metagenome; human gut
4446
4521
+
Arg
TCT
[ENA]
¢þ
>WENV182819430
OKAC01000741
[OKAC] human gut metagenome; human gut
4464
4392
-
Phe
GAA
[ENA]
¢þ
>WENV182819410
OKAC01000393
[OKAC] human gut metagenome; human gut
4478
4554
+
Arg
TCT
[ENA]
¢þ
>WENV182819439
OKAC01000765
[OKAC] human gut metagenome; human gut
4548
4622
+
Gly
TCC
[ENA]
¢þ
>WENV182819429
OKAC01000741
[OKAC] human gut metagenome; human gut
4585
4510
-
Asp
GTC
[ENA]
¢þ
>WENV182819428
OKAC01000741
[OKAC] human gut metagenome; human gut
4669
4595
-
Val
TAC
[ENA]
¢þ
>WENV182819424
OKAC01000658
[OKAC] human gut metagenome; human gut
5106
5031
-
Trp
CCA
[ENA]
¢þ
>WENV182819411
OKAC01000405
[OKAC] human gut metagenome; human gut
5294
5365
+
Cys
GCA
[ENA]
¢þ
>WENV182819413
OKAC01000429
[OKAC] human gut metagenome; human gut
5295
5220
-
Arg
TCT
[ENA]
¢þ
>WENV182819416
OKAC01000447
[OKAC] human gut metagenome; human gut
6209
6284
+
Gly
GCC
[ENA]
¢þ
>WENV182819417
OKAC01000447
[OKAC] human gut metagenome; human gut
6330
6405
+
Gly
GCC
[ENA]
¢þ
>WENV182819419
OKAC01000486
[OKAC] human gut metagenome; human gut
6679
6604
-
Trp
CCA
[ENA]
¢þ
>WENV182819349
OKAC01000028
[OKAC] human gut metagenome; human gut
6742
6656
-
Ser
CGA
[ENA]
¢þ
>WENV182819357
OKAC01000052
[OKAC] human gut metagenome; human gut
6977
6902
-
Phe
GAA
[ENA]
¢þ
>WENV182819401
OKAC01000347
[OKAC] human gut metagenome; human gut
7123
7029
-
SeC
TCA
[ENA]
¢þ
>WENV182819395
OKAC01000226
[OKAC] human gut metagenome; human gut
7186
7273
+
Ser
GGA
[ENA]
¢þ
>WENV182819387
OKAC01000140
[OKAC] human gut metagenome; human gut
7682
7758
+
Pro
GGG
[ENA]
¢þ
>WENV182819394
OKAC01000223
[OKAC] human gut metagenome; human gut
7726
7653
-
Asn
GTT
[ENA]
¢þ
>WENV182819348
OKAC01000027
[OKAC] human gut metagenome; human gut
7827
7910
+
Leu
CAG
[ENA]
¢þ
>WENV182819377
OKAC01000085
[OKAC] human gut metagenome; human gut
8668
8581
-
Ser
GGA
[ENA]
¢þ
>WENV182819388
OKAC01000151
[OKAC] human gut metagenome; human gut
9412
9488
+
Asp
GTC
[ENA]
¢þ
>WENV182819374
OKAC01000079
[OKAC] human gut metagenome; human gut
9513
9584
+
Gln
TTG
[ENA]
¢þ
>WENV182819396
OKAC01000226
[OKAC] human gut metagenome; human gut
10228
10315
+
Ser
GGA
[ENA]
¢þ
>WENV182819397
OKAC01000247
[OKAC] human gut metagenome; human gut
10261
10186
-
Phe
GAA
[ENA]
¢þ
>WENV182819399
OKAC01000275
[OKAC] human gut metagenome; human gut
10396
10322
-
Lys
CTT
[ENA]
¢þ
>WENV182819378
OKAC01000091
[OKAC] human gut metagenome; human gut
10507
10592
+
Ser
TGA
[ENA]
¢þ
>WENV182819398
OKAC01000252
[OKAC] human gut metagenome; human gut
11768
11692
-
Arg
ACG
[ENA]
¢þ
>WENV182819375
OKAC01000079
[OKAC] human gut metagenome; human gut
12527
12600
+
Ala
GGC
[ENA]
¢þ
>WENV182819384
OKAC01000107
[OKAC] human gut metagenome; human gut
12719
12633
-
Leu
TAA
[ENA]
¢þ
>WENV182819383
OKAC01000107
[OKAC] human gut metagenome; human gut
12804
12731
-
Cys
GCA
[ENA]
¢þ
>WENV182819382
OKAC01000107
[OKAC] human gut metagenome; human gut
12931
12856
-
Gly
GCC
[ENA]
¢þ
>WENV182819391
OKAC01000174
[OKAC] human gut metagenome; human gut
13180
13105
-
Asn
GTT
[ENA]
¢þ
>WENV182819343
OKAC01000013
[OKAC] human gut metagenome; human gut
13346
13270
-
Val
GAC
[ENA]
¢þ
>WENV182819342
OKAC01000013
[OKAC] human gut metagenome; human gut
13427
13351
-
Val
GAC
[ENA]
¢þ
>WENV182819385
OKAC01000123
[OKAC] human gut metagenome; human gut
13594
13683
+
Ser
CGA
[ENA]
¢þ
>WENV182819390
OKAC01000174
[OKAC] human gut metagenome; human gut
14929
15004
+
Asn
GTT
[ENA]
¢þ
>WENV182819370
OKAC01000064
[OKAC] human gut metagenome; human gut
15066
14991
-
Asn
GTT
[ENA]
¢þ
>WENV182819386
OKAC01000126
[OKAC] human gut metagenome; human gut
15949
15874
-
Ile2
CAT
[ENA]
¢þ
>WENV182819360
OKAC01000059
[OKAC] human gut metagenome; human gut
16767
16842
+
Gly
GCC
[ENA]
¢þ
>WENV182819389
OKAC01000158
[OKAC] human gut metagenome; human gut
16877
16802
-
Ala
GGC
[ENA]
¢þ
>WENV182819369
OKAC01000064
[OKAC] human gut metagenome; human gut
17526
17451
-
Asn
GTT
[ENA]
¢þ
>WENV182819373
OKAC01000076
[OKAC] human gut metagenome; human gut
18080
18156
+
Asp
GTC
[ENA]
¢þ
>WENV182819380
OKAC01000092
[OKAC] human gut metagenome; human gut
19307
19381
+
Pro
CGG
[ENA]
¢þ
>WENV182819325
OKAC01000001
[OKAC] human gut metagenome; human gut
20804
20878
+
Arg
TCT
[ENA]
¢þ
>WENV182819347
OKAC01000023
[OKAC] human gut metagenome; human gut
21387
21312
-
Asn
GTT
[ENA]
¢þ
>WENV182819344
OKAC01000016
[OKAC] human gut metagenome; human gut
23164
23238
+
Val
TAC
[ENA]
¢þ
>WENV182819372
OKAC01000065
[OKAC] human gut metagenome; human gut
25012
24925
-
Ser
TGA
[ENA]
¢þ
>WENV182819376
OKAC01000079
[OKAC] human gut metagenome; human gut
27335
27409
+
Pro
TGG
[ENA]
¢þ
>WENV182819350
OKAC01000029
[OKAC] human gut metagenome; human gut
29487
29563
+
fMet
CAT
[ENA]
¢þ
>WENV182819351
OKAC01000029
[OKAC] human gut metagenome; human gut
29608
29684
+
fMet
CAT
[ENA]
¢þ
>WENV182819352
OKAC01000029
[OKAC] human gut metagenome; human gut
29729
29805
+
fMet
CAT
[ENA]
¢þ
>WENV182819353
OKAC01000037
[OKAC] human gut metagenome; human gut
29943
30025
+
Tyr
GTA
[ENA]
¢þ
>WENV182819354
OKAC01000037
[OKAC] human gut metagenome; human gut
30102
30176
+
Met
CAT
[ENA]
¢þ
>WENV182819333
OKAC01000004
[OKAC] human gut metagenome; human gut
31256
31340
+
Leu
CAA
[ENA]
¢þ
>WENV182819371
OKAC01000065
[OKAC] human gut metagenome; human gut
31447
31360
-
Ser
TGA
[ENA]
¢þ
>WENV182819356
OKAC01000041
[OKAC] human gut metagenome; human gut
31626
31552
-
fMet
CAT
[ENA]
¢þ
>WENV182819361
OKAC01000059
[OKAC] human gut metagenome; human gut
33790
33865
+
Pro
GGG
[ENA]
¢þ
>WENV182819339
OKAC01000008
[OKAC] human gut metagenome; human gut
35560
35487
-
Arg
CCT
[ENA]
¢þ
>WENV182819355
OKAC01000037
[OKAC] human gut metagenome; human gut
37859
37946
+
Ser
GCT
[ENA]
¢þ
>WENV182819337
OKAC01000007
[OKAC] human gut metagenome; human gut
42985
43059
+
Lys
CTT
[ENA]
¢þ
>WENV182819329
OKAC01000002
[OKAC] human gut metagenome; human gut
49561
49649
+
Leu
GAG
[ENA]
¢þ
>WENV182819330
OKAC01000003
[OKAC] human gut metagenome; human gut
52738
52812
+
Thr
TGT
[ENA]
¢þ
>WENV182819345
OKAC01000020
[OKAC] human gut metagenome; human gut
58151
58078
-
Thr
CGT
[ENA]
¢þ
>WENV182819328
OKAC01000001
[OKAC] human gut metagenome; human gut
64989
64914
-
His
GTG
[ENA]
¢þ
>WENV182819334
OKAC01000005
[OKAC] human gut metagenome; human gut
75321
75245
-
Arg
TCT
[ENA]
¢þ
>WENV182819338
OKAC01000008
[OKAC] human gut metagenome; human gut
76370
76296
-
Ile2
CAT
[ENA]
¢þ
>WENV182819335
OKAC01000006
[OKAC] human gut metagenome; human gut
88583
88499
-
Tyr
GTA
[ENA]
¢þ
>WENV182819332
OKAC01000003
[OKAC] human gut metagenome; human gut
93316
93243
-
Ala
TGC
[ENA]
¢þ
>WENV182819331
OKAC01000003
[OKAC] human gut metagenome; human gut
93432
93358
-
Ile
GAT
[ENA]
¢þ
>WENV182819326
OKAC01000001
[OKAC] human gut metagenome; human gut
160072
160152
+
Leu
TAA
[ENA]
¢þ
>WENV182819327
OKAC01000001
[OKAC] human gut metagenome; human gut
196254
196330
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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