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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKAE] human gut metagenome; human gut
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182819608
OKAE01001401
[OKAE] human gut metagenome; human gut
1
74
+
Glu
TTC
[ENA]
¢þ
>WENV182819609
OKAE01001401
[OKAE] human gut metagenome; human gut
86
175
+
Ser
TGA
[ENA]
¢þ
>WENV182819557
OKAE01000028
[OKAE] human gut metagenome; human gut
97
173
+
Asp
GTC
[ENA]
¢þ
>WENV182819583
OKAE01000103
[OKAE] human gut metagenome; human gut
149
75
-
Ala
TGC
[ENA]
¢þ
>WENV182819574
OKAE01000084
[OKAE] human gut metagenome; human gut
166
91
-
Lys
TTT
[ENA]
¢þ
>WENV182819558
OKAE01000028
[OKAE] human gut metagenome; human gut
182
257
+
Trp
CCA
[ENA]
¢þ
>WENV182819602
OKAE01000860
[OKAE] human gut metagenome; human gut
192
106
-
Leu
GAG
[ENA]
¢þ
>WENV182819564
OKAE01000031
[OKAE] human gut metagenome; human gut
194
118
-
Arg
ACG
[ENA]
¢þ
>WENV182819607
OKAE01000960
[OKAE] human gut metagenome; human gut
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV182819610
OKAE01001401
[OKAE] human gut metagenome; human gut
208
283
+
fMet
CAT
[ENA]
¢þ
>WENV182819582
OKAE01000103
[OKAE] human gut metagenome; human gut
235
162
-
Pro
TGG
[ENA]
¢þ
>WENV182819563
OKAE01000031
[OKAE] human gut metagenome; human gut
290
198
-
Ser
GCT
[ENA]
¢þ
>WENV182819611
OKAE01001401
[OKAE] human gut metagenome; human gut
321
397
+
Asp
GTC
[ENA]
¢þ
>WENV182819581
OKAE01000103
[OKAE] human gut metagenome; human gut
398
325
-
Arg
ACG
[ENA]
¢þ
>WENV182819612
OKAE01001401
[OKAE] human gut metagenome; human gut
399
469
+
Gly
TCC
[ENA]
¢þ
>WENV182819613
OKAE01001401
[OKAE] human gut metagenome; human gut
478
553
+
Ile
GAT
[ENA]
¢þ
>WENV182819580
OKAE01000103
[OKAE] human gut metagenome; human gut
498
413
-
Leu
TAA
[ENA]
¢þ
>WENV182819614
OKAE01001401
[OKAE] human gut metagenome; human gut
562
651
+
Ser
GCT
[ENA]
¢þ
>WENV182819579
OKAE01000103
[OKAE] human gut metagenome; human gut
585
514
-
Gly
GCC
[ENA]
¢þ
>WENV182819578
OKAE01000103
[OKAE] human gut metagenome; human gut
665
590
-
Thr
TGT
[ENA]
¢þ
>WENV182819577
OKAE01000103
[OKAE] human gut metagenome; human gut
754
671
-
Leu
TAG
[ENA]
¢þ
>WENV182819541
OKAE01000004
[OKAE] human gut metagenome; human gut
829
753
-
Arg
TCT
[ENA]
¢þ
>WENV182819576
OKAE01000103
[OKAE] human gut metagenome; human gut
843
769
-
Lys
TTT
[ENA]
¢þ
>WENV182819575
OKAE01000103
[OKAE] human gut metagenome; human gut
922
848
-
Val
TAC
[ENA]
¢þ
>WENV182819605
OKAE01000871
[OKAE] human gut metagenome; human gut
970
894
-
Arg
TCT
[ENA]
¢þ
>WENV182819601
OKAE01000530
[OKAE] human gut metagenome; human gut
982
897
-
Leu
CAA
[ENA]
¢þ
>WENV182819569
OKAE01000056
[OKAE] human gut metagenome; human gut
1026
951
-
Thr
CGT
[ENA]
¢þ
>WENV182819604
OKAE01000871
[OKAE] human gut metagenome; human gut
1061
985
-
Arg
TCG
[ENA]
¢þ
>WENV182819600
OKAE01000530
[OKAE] human gut metagenome; human gut
1065
995
-
Cys
GCA
[ENA]
¢þ
>WENV182819606
OKAE01000928
[OKAE] human gut metagenome; human gut
1073
998
-
Phe
GAA
[ENA]
¢þ
>WENV182819603
OKAE01000871
[OKAE] human gut metagenome; human gut
1146
1071
-
Ile2
CAT
[ENA]
¢þ
>WENV182819599
OKAE01000530
[OKAE] human gut metagenome; human gut
1163
1090
-
Gln
TTG
[ENA]
¢þ
>WENV182819598
OKAE01000530
[OKAE] human gut metagenome; human gut
1249
1176
-
His
GTG
[ENA]
¢þ
>WENV182819597
OKAE01000530
[OKAE] human gut metagenome; human gut
1359
1286
-
Trp
CCA
[ENA]
¢þ
>WENV182819596
OKAE01000530
[OKAE] human gut metagenome; human gut
1445
1363
-
Tyr
GTA
[ENA]
¢þ
>WENV182819595
OKAE01000530
[OKAE] human gut metagenome; human gut
1522
1450
-
Phe
GAA
[ENA]
¢þ
>WENV182819594
OKAE01000530
[OKAE] human gut metagenome; human gut
1643
1568
-
Asp
GTC
[ENA]
¢þ
>WENV182819584
OKAE01000109
[OKAE] human gut metagenome; human gut
1798
1873
+
Asn
GTT
[ENA]
¢þ
>WENV182819593
OKAE01000293
[OKAE] human gut metagenome; human gut
2201
2126
-
Ala
TGC
[ENA]
¢þ
>WENV182819592
OKAE01000293
[OKAE] human gut metagenome; human gut
2320
2244
-
Ile
GAT
[ENA]
¢þ
>WENV182819573
OKAE01000079
[OKAE] human gut metagenome; human gut
2334
2260
-
Arg
CCT
[ENA]
¢þ
>WENV182819587
OKAE01000119
[OKAE] human gut metagenome; human gut
2713
2641
-
Asn
GTT
[ENA]
¢þ
>WENV182819588
OKAE01000132
[OKAE] human gut metagenome; human gut
3515
3590
+
Thr
TGT
[ENA]
¢þ
>WENV182819589
OKAE01000132
[OKAE] human gut metagenome; human gut
3599
3683
+
Tyr
GTA
[ENA]
¢þ
>WENV182819590
OKAE01000132
[OKAE] human gut metagenome; human gut
3800
3874
+
Gly
TCC
[ENA]
¢þ
>WENV182819591
OKAE01000132
[OKAE] human gut metagenome; human gut
3881
3956
+
Thr
GGT
[ENA]
¢þ
>WENV182819586
OKAE01000111
[OKAE] human gut metagenome; human gut
4203
4114
-
Ser
CGA
[ENA]
¢þ
>WENV182819585
OKAE01000109
[OKAE] human gut metagenome; human gut
4207
4282
+
Asn
GTT
[ENA]
¢þ
>WENV182819547
OKAE01000008
[OKAE] human gut metagenome; human gut
7044
6960
-
Leu
CAA
[ENA]
¢þ
>WENV182819566
OKAE01000044
[OKAE] human gut metagenome; human gut
9046
9120
+
Asn
GTT
[ENA]
¢þ
>WENV182819567
OKAE01000044
[OKAE] human gut metagenome; human gut
9126
9201
+
Thr
TGT
[ENA]
¢þ
>WENV182819572
OKAE01000062
[OKAE] human gut metagenome; human gut
12456
12370
-
Leu
TAA
[ENA]
¢þ
>WENV182819571
OKAE01000062
[OKAE] human gut metagenome; human gut
12542
12469
-
Cys
GCA
[ENA]
¢þ
>WENV182819570
OKAE01000062
[OKAE] human gut metagenome; human gut
12672
12597
-
Gly
GCC
[ENA]
¢þ
>WENV182819551
OKAE01000024
[OKAE] human gut metagenome; human gut
19702
19616
-
Leu
CAG
[ENA]
¢þ
>WENV182819568
OKAE01000050
[OKAE] human gut metagenome; human gut
21364
21288
-
Asp
GTC
[ENA]
¢þ
>WENV182819540
OKAE01000003
[OKAE] human gut metagenome; human gut
23964
24051
+
Ser
GGA
[ENA]
¢þ
>WENV182819536
OKAE01000002
[OKAE] human gut metagenome; human gut
30147
30222
+
Ile2
CAT
[ENA]
¢þ
>WENV182819552
OKAE01000026
[OKAE] human gut metagenome; human gut
30961
31037
+
Met
CAT
[ENA]
¢þ
>WENV182819553
OKAE01000026
[OKAE] human gut metagenome; human gut
31048
31132
+
Leu
TAG
[ENA]
¢þ
>WENV182819554
OKAE01000026
[OKAE] human gut metagenome; human gut
31156
31230
+
Gln
TTG
[ENA]
¢þ
>WENV182819555
OKAE01000026
[OKAE] human gut metagenome; human gut
31246
31322
+
Met
CAT
[ENA]
¢þ
>WENV182819556
OKAE01000026
[OKAE] human gut metagenome; human gut
31371
31445
+
Gln
CTG
[ENA]
¢þ
>WENV182819559
OKAE01000028
[OKAE] human gut metagenome; human gut
34726
34802
+
Arg
CCG
[ENA]
¢þ
>WENV182819560
OKAE01000028
[OKAE] human gut metagenome; human gut
34861
34936
+
His
GTG
[ENA]
¢þ
>WENV182819561
OKAE01000028
[OKAE] human gut metagenome; human gut
34957
35043
+
Leu
CAG
[ENA]
¢þ
>WENV182819562
OKAE01000028
[OKAE] human gut metagenome; human gut
35086
35162
+
Pro
TGG
[ENA]
¢þ
>WENV182819549
OKAE01000012
[OKAE] human gut metagenome; human gut
37066
36990
-
Pro
CGG
[ENA]
¢þ
>WENV182819565
OKAE01000033
[OKAE] human gut metagenome; human gut
46370
46295
-
Ala
GGC
[ENA]
¢þ
>WENV182819548
OKAE01000011
[OKAE] human gut metagenome; human gut
50798
50725
-
Gly
CCC
[ENA]
¢þ
>WENV182819542
OKAE01000005
[OKAE] human gut metagenome; human gut
54329
54253
-
Pro
GGG
[ENA]
¢þ
>WENV182819543
OKAE01000006
[OKAE] human gut metagenome; human gut
57170
57264
+
SeC
TCA
[ENA]
¢þ
>WENV182819550
OKAE01000014
[OKAE] human gut metagenome; human gut
85249
85165
-
Tyr
GTA
[ENA]
¢þ
>WENV182819545
OKAE01000007
[OKAE] human gut metagenome; human gut
92179
92092
-
Ser
TGA
[ENA]
¢þ
>WENV182819546
OKAE01000008
[OKAE] human gut metagenome; human gut
119983
119908
-
Gly
GCC
[ENA]
¢þ
>WENV182819539
OKAE01000002
[OKAE] human gut metagenome; human gut
124877
124801
-
fMet
CAT
[ENA]
¢þ
>WENV182819538
OKAE01000002
[OKAE] human gut metagenome; human gut
128741
128655
-
Leu
GAG
[ENA]
¢þ
>WENV182819544
OKAE01000007
[OKAE] human gut metagenome; human gut
144185
144098
-
Ser
GGA
[ENA]
¢þ
>WENV182819535
OKAE01000001
[OKAE] human gut metagenome; human gut
220873
220797
-
Val
GAC
[ENA]
¢þ
>WENV182819534
OKAE01000001
[OKAE] human gut metagenome; human gut
220954
220878
-
Val
GAC
[ENA]
¢þ
>WENV182819537
OKAE01000002
[OKAE] human gut metagenome; human gut
228211
228136
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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