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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKAH] human gut metagenome; human gut
HIT:
106 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182819890
OKAH01001176
[OKAH] human gut metagenome; human gut
59
131
+
Gly
TCC
[ENA]
¢þ
>WENV182819896
OKAH01001360
[OKAH] human gut metagenome; human gut
85
170
+
Leu
TAA
[ENA]
¢þ
>WENV182819854
OKAH01000084
[OKAH] human gut metagenome; human gut
89
165
+
fMet
CAT
[ENA]
¢þ
>WENV182819840
OKAH01000027
[OKAH] human gut metagenome; human gut
105
180
+
Trp
CCA
[ENA]
¢þ
>WENV182819858
OKAH01000140
[OKAH] human gut metagenome; human gut
110
37
-
Gly
TCC
[ENA]
¢þ
>WENV182819863
OKAH01000266
[OKAH] human gut metagenome; human gut
111
24
-
Ser
GGA
[ENA]
¢þ
>WENV182819804
OKAH01000001
[OKAH] human gut metagenome; human gut
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV182819907
OKAH01002072
[OKAH] human gut metagenome; human gut
143
68
-
fMet
CAT
[ENA]
¢þ
>WENV182819889
OKAH01001076
[OKAH] human gut metagenome; human gut
146
221
+
Arg
CCT
[ENA]
¢þ
>WENV182819891
OKAH01001176
[OKAH] human gut metagenome; human gut
165
240
+
Ile
GAT
[ENA]
¢þ
>WENV182819851
OKAH01000033
[OKAH] human gut metagenome; human gut
166
92
-
Gln
TTG
[ENA]
¢þ
>WENV182819908
OKAH01002256
[OKAH] human gut metagenome; human gut
176
103
-
Arg
CCG
[ENA]
¢þ
>WENV182819897
OKAH01001360
[OKAH] human gut metagenome; human gut
185
258
+
Arg
ACG
[ENA]
¢þ
>WENV182819857
OKAH01000140
[OKAH] human gut metagenome; human gut
189
115
-
Gly
GCC
[ENA]
¢þ
>WENV182819892
OKAH01001176
[OKAH] human gut metagenome; human gut
246
333
+
Ser
GCT
[ENA]
¢þ
>WENV182819893
OKAH01001197
[OKAH] human gut metagenome; human gut
248
176
-
Thr
GGT
[ENA]
¢þ
>WENV182819906
OKAH01002072
[OKAH] human gut metagenome; human gut
265
176
-
Ser
TGA
[ENA]
¢þ
>WENV182819850
OKAH01000033
[OKAH] human gut metagenome; human gut
274
190
-
Leu
TAG
[ENA]
¢þ
>WENV182819832
OKAH01000011
[OKAH] human gut metagenome; human gut
296
212
-
Tyr
GTA
[ENA]
¢þ
>WENV182819856
OKAH01000140
[OKAH] human gut metagenome; human gut
299
216
-
Leu
TAG
[ENA]
¢þ
>WENV182819898
OKAH01001360
[OKAH] human gut metagenome; human gut
348
421
+
Pro
TGG
[ENA]
¢þ
>WENV182819905
OKAH01002072
[OKAH] human gut metagenome; human gut
350
277
-
Glu
TTC
[ENA]
¢þ
>WENV182819849
OKAH01000033
[OKAH] human gut metagenome; human gut
360
284
-
Met
CAT
[ENA]
¢þ
>WENV182819855
OKAH01000140
[OKAH] human gut metagenome; human gut
385
310
-
Lys
TTT
[ENA]
¢þ
>WENV182819831
OKAH01000011
[OKAH] human gut metagenome; human gut
419
335
-
Tyr
GTA
[ENA]
¢þ
>WENV182819895
OKAH01001232
[OKAH] human gut metagenome; human gut
447
375
-
Cys
GCA
[ENA]
¢þ
>WENV182819904
OKAH01002072
[OKAH] human gut metagenome; human gut
453
364
-
Ser
GCT
[ENA]
¢þ
>WENV182819903
OKAH01002072
[OKAH] human gut metagenome; human gut
537
462
-
Ile
GAT
[ENA]
¢þ
>WENV182819881
OKAH01000536
[OKAH] human gut metagenome; human gut
553
627
+
Val
TAC
[ENA]
¢þ
>WENV182819899
OKAH01001536
[OKAH] human gut metagenome; human gut
575
504
-
Trp
CCA
[ENA]
¢þ
>WENV182819902
OKAH01002072
[OKAH] human gut metagenome; human gut
616
546
-
Gly
TCC
[ENA]
¢þ
>WENV182819882
OKAH01000536
[OKAH] human gut metagenome; human gut
637
712
+
Asp
GTC
[ENA]
¢þ
>WENV182819901
OKAH01002072
[OKAH] human gut metagenome; human gut
704
627
-
Phe
GAA
[ENA]
¢þ
>WENV182819894
OKAH01001226
[OKAH] human gut metagenome; human gut
708
634
-
Ala
TGC
[ENA]
¢þ
>WENV182819900
OKAH01001829
[OKAH] human gut metagenome; human gut
728
656
-
Thr
CGT
[ENA]
¢þ
>WENV182819887
OKAH01000888
[OKAH] human gut metagenome; human gut
738
809
+
Arg
CCT
[ENA]
¢þ
>WENV182819883
OKAH01000536
[OKAH] human gut metagenome; human gut
758
830
+
Phe
GAA
[ENA]
¢þ
>WENV182819862
OKAH01000240
[OKAH] human gut metagenome; human gut
776
849
+
Arg
CCG
[ENA]
¢þ
>WENV182819888
OKAH01001056
[OKAH] human gut metagenome; human gut
781
856
+
Lys
CTT
[ENA]
¢þ
>WENV182819884
OKAH01000536
[OKAH] human gut metagenome; human gut
835
917
+
Tyr
GTA
[ENA]
¢þ
>WENV182819885
OKAH01000536
[OKAH] human gut metagenome; human gut
925
998
+
Gln
TTG
[ENA]
¢þ
>WENV182819880
OKAH01000470
[OKAH] human gut metagenome; human gut
1046
1121
+
Arg
TCT
[ENA]
¢þ
>WENV182819879
OKAH01000346
[OKAH] human gut metagenome; human gut
1103
1032
-
Gln
TTG
[ENA]
¢þ
>WENV182819878
OKAH01000346
[OKAH] human gut metagenome; human gut
1193
1111
-
Tyr
GTA
[ENA]
¢þ
>WENV182819877
OKAH01000346
[OKAH] human gut metagenome; human gut
1283
1209
-
Phe
GAA
[ENA]
¢þ
>WENV182819876
OKAH01000346
[OKAH] human gut metagenome; human gut
1359
1286
-
fMet
CAT
[ENA]
¢þ
>WENV182819886
OKAH01000549
[OKAH] human gut metagenome; human gut
1360
1431
+
Trp
CCA
[ENA]
¢þ
>WENV182819875
OKAH01000346
[OKAH] human gut metagenome; human gut
1460
1371
-
Ser
TGA
[ENA]
¢þ
>WENV182819874
OKAH01000346
[OKAH] human gut metagenome; human gut
1546
1471
-
Ile2
CAT
[ENA]
¢þ
>WENV182819873
OKAH01000346
[OKAH] human gut metagenome; human gut
1633
1558
-
Met
CAT
[ENA]
¢þ
>WENV182819872
OKAH01000346
[OKAH] human gut metagenome; human gut
1711
1638
-
Pro
TGG
[ENA]
¢þ
>WENV182819871
OKAH01000346
[OKAH] human gut metagenome; human gut
1800
1727
-
Arg
ACG
[ENA]
¢þ
>WENV182819870
OKAH01000346
[OKAH] human gut metagenome; human gut
1897
1812
-
Leu
TAA
[ENA]
¢þ
>WENV182819869
OKAH01000346
[OKAH] human gut metagenome; human gut
1976
1905
-
Gly
GCC
[ENA]
¢þ
>WENV182819868
OKAH01000346
[OKAH] human gut metagenome; human gut
2076
2004
-
Thr
TGT
[ENA]
¢þ
>WENV182819867
OKAH01000346
[OKAH] human gut metagenome; human gut
2171
2088
-
Leu
TAG
[ENA]
¢þ
>WENV182819866
OKAH01000346
[OKAH] human gut metagenome; human gut
2248
2176
-
Lys
TTT
[ENA]
¢þ
>WENV182819865
OKAH01000346
[OKAH] human gut metagenome; human gut
2345
2273
-
Asp
GTC
[ENA]
¢þ
>WENV182819864
OKAH01000346
[OKAH] human gut metagenome; human gut
2421
2347
-
Val
TAC
[ENA]
¢þ
>WENV182819805
OKAH01000002
[OKAH] human gut metagenome; human gut
2757
2832
+
Ala
GGC
[ENA]
¢þ
>WENV182819806
OKAH01000002
[OKAH] human gut metagenome; human gut
2874
2949
+
Ala
GGC
[ENA]
¢þ
>WENV182819837
OKAH01000015
[OKAH] human gut metagenome; human gut
2905
2811
-
SeC
TCA
[ENA]
¢þ
>WENV182819803
OKAH01000001
[OKAH] human gut metagenome; human gut
3205
3118
-
Ser
GGA
[ENA]
¢þ
>WENV182819859
OKAH01000216
[OKAH] human gut metagenome; human gut
3619
3694
+
Thr
TGT
[ENA]
¢þ
>WENV182819860
OKAH01000216
[OKAH] human gut metagenome; human gut
3705
3789
+
Tyr
GTA
[ENA]
¢þ
>WENV182819861
OKAH01000216
[OKAH] human gut metagenome; human gut
3905
3979
+
Gly
TCC
[ENA]
¢þ
>WENV182819821
OKAH01000005
[OKAH] human gut metagenome; human gut
3908
3833
-
Asn
GTT
[ENA]
¢þ
>WENV182819830
OKAH01000009
[OKAH] human gut metagenome; human gut
4729
4645
-
Leu
CAA
[ENA]
¢þ
>WENV182819814
OKAH01000005
[OKAH] human gut metagenome; human gut
5665
5740
+
Asn
GTT
[ENA]
¢þ
>WENV182819853
OKAH01000060
[OKAH] human gut metagenome; human gut
10166
10237
+
Glu
TTC
[ENA]
¢þ
>WENV182819820
OKAH01000005
[OKAH] human gut metagenome; human gut
14568
14493
-
Asn
GTT
[ENA]
¢þ
>WENV182819819
OKAH01000005
[OKAH] human gut metagenome; human gut
18058
17983
-
Asn
GTT
[ENA]
¢þ
>WENV182819852
OKAH01000043
[OKAH] human gut metagenome; human gut
18599
18673
+
Gly
TCC
[ENA]
¢þ
>WENV182819815
OKAH01000005
[OKAH] human gut metagenome; human gut
19050
19139
+
Ser
CGA
[ENA]
¢þ
>WENV182819808
OKAH01000002
[OKAH] human gut metagenome; human gut
24914
24840
-
Arg
CCT
[ENA]
¢þ
>WENV182819841
OKAH01000027
[OKAH] human gut metagenome; human gut
35381
35457
+
Arg
CCG
[ENA]
¢þ
>WENV182819842
OKAH01000027
[OKAH] human gut metagenome; human gut
35513
35588
+
His
GTG
[ENA]
¢þ
>WENV182819843
OKAH01000027
[OKAH] human gut metagenome; human gut
35612
35698
+
Leu
CAG
[ENA]
¢þ
>WENV182819844
OKAH01000027
[OKAH] human gut metagenome; human gut
35741
35817
+
Pro
TGG
[ENA]
¢þ
>WENV182819816
OKAH01000005
[OKAH] human gut metagenome; human gut
40240
40315
+
Gly
GCC
[ENA]
¢þ
>WENV182819817
OKAH01000005
[OKAH] human gut metagenome; human gut
40356
40429
+
Cys
GCA
[ENA]
¢þ
>WENV182819818
OKAH01000005
[OKAH] human gut metagenome; human gut
40443
40529
+
Leu
TAA
[ENA]
¢þ
>WENV182819848
OKAH01000030
[OKAH] human gut metagenome; human gut
57631
57555
-
Val
GAC
[ENA]
¢þ
>WENV182819847
OKAH01000030
[OKAH] human gut metagenome; human gut
57712
57636
-
Val
GAC
[ENA]
¢þ
>WENV182819813
OKAH01000004
[OKAH] human gut metagenome; human gut
62579
62492
-
Ser
TGA
[ENA]
¢þ
>WENV182819809
OKAH01000003
[OKAH] human gut metagenome; human gut
66065
66140
+
Ile2
CAT
[ENA]
¢þ
>WENV182819846
OKAH01000029
[OKAH] human gut metagenome; human gut
70211
70137
-
Gln
CTG
[ENA]
¢þ
>WENV182819845
OKAH01000029
[OKAH] human gut metagenome; human gut
70362
70288
-
Gln
CTG
[ENA]
¢þ
>WENV182819835
OKAH01000013
[OKAH] human gut metagenome; human gut
91973
91897
-
Arg
TCT
[ENA]
¢þ
>WENV182819839
OKAH01000020
[OKAH] human gut metagenome; human gut
103607
103521
-
Leu
CAG
[ENA]
¢þ
>WENV182819838
OKAH01000020
[OKAH] human gut metagenome; human gut
103724
103638
-
Leu
CAG
[ENA]
¢þ
>WENV182819836
OKAH01000015
[OKAH] human gut metagenome; human gut
129461
129537
+
Pro
CGG
[ENA]
¢þ
>WENV182819826
OKAH01000007
[OKAH] human gut metagenome; human gut
130705
130632
-
Gly
CCC
[ENA]
¢þ
>WENV182819829
OKAH01000009
[OKAH] human gut metagenome; human gut
131794
131719
-
Gly
GCC
[ENA]
¢þ
>WENV182819828
OKAH01000009
[OKAH] human gut metagenome; human gut
131942
131867
-
Gly
GCC
[ENA]
¢þ
>WENV182819827
OKAH01000009
[OKAH] human gut metagenome; human gut
132090
132015
-
Gly
GCC
[ENA]
¢þ
>WENV182819807
OKAH01000002
[OKAH] human gut metagenome; human gut
146925
146849
-
Pro
GGG
[ENA]
¢þ
>WENV182819833
OKAH01000012
[OKAH] human gut metagenome; human gut
151746
151838
+
Ser
GCT
[ENA]
¢þ
>WENV182819834
OKAH01000012
[OKAH] human gut metagenome; human gut
151843
151919
+
Arg
ACG
[ENA]
¢þ
>WENV182819812
OKAH01000003
[OKAH] human gut metagenome; human gut
172748
172672
-
fMet
CAT
[ENA]
¢þ
>WENV182819811
OKAH01000003
[OKAH] human gut metagenome; human gut
176781
176695
-
Leu
GAG
[ENA]
¢þ
>WENV182819822
OKAH01000006
[OKAH] human gut metagenome; human gut
180641
180716
+
Thr
CGT
[ENA]
¢þ
>WENV182819825
OKAH01000007
[OKAH] human gut metagenome; human gut
218394
218469
+
Phe
GAA
[ENA]
¢þ
>WENV182819824
OKAH01000006
[OKAH] human gut metagenome; human gut
234685
234609
-
Asp
GTC
[ENA]
¢þ
>WENV182819823
OKAH01000006
[OKAH] human gut metagenome; human gut
244124
244048
-
Asp
GTC
[ENA]
¢þ
>WENV182819810
OKAH01000003
[OKAH] human gut metagenome; human gut
265789
265714
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK