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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKAW] human gut metagenome; human gut
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182821405
OKAW01000906
[OKAW] human gut metagenome; human gut
48
121
+
His
GTG
[ENA]
¢þ
>WENV182821424
OKAW01001394
[OKAW] human gut metagenome; human gut
66
141
+
Trp
CCA
[ENA]
¢þ
>WENV182821406
OKAW01000906
[OKAW] human gut metagenome; human gut
132
203
+
Gln
TTG
[ENA]
¢þ
>WENV182821420
OKAW01001103
[OKAW] human gut metagenome; human gut
142
215
+
Ala
GGC
[ENA]
¢þ
>WENV182821434
OKAW01002033
[OKAW] human gut metagenome; human gut
146
73
-
Glu
TTC
[ENA]
¢þ
>WENV182821440
OKAW01002684
[OKAW] human gut metagenome; human gut
154
240
+
Leu
GAG
[ENA]
¢þ
>WENV182821431
OKAW01001801
[OKAW] human gut metagenome; human gut
159
233
+
Ile2
CAT
[ENA]
¢þ
>WENV182821402
OKAW01000832
[OKAW] human gut metagenome; human gut
172
245
+
Gly
CCC
[ENA]
¢þ
>WENV182821435
OKAW01002254
[OKAW] human gut metagenome; human gut
187
258
+
Thr
CGT
[ENA]
¢þ
>WENV182821438
OKAW01002358
[OKAW] human gut metagenome; human gut
194
120
-
Leu
CAA
[ENA]
¢þ
>WENV182821425
OKAW01001479
[OKAW] human gut metagenome; human gut
199
272
+
Glu
CTC
[ENA]
¢þ
>WENV182821422
OKAW01001188
[OKAW] human gut metagenome; human gut
245
173
-
Gln
CTG
[ENA]
¢þ
>WENV182821407
OKAW01000906
[OKAW] human gut metagenome; human gut
249
319
+
Cys
GCA
[ENA]
¢þ
>WENV182821432
OKAW01001968
[OKAW] human gut metagenome; human gut
270
198
-
Glu
TTC
[ENA]
¢þ
>WENV182821427
OKAW01001480
[OKAW] human gut metagenome; human gut
295
210
-
Leu
CAG
[ENA]
¢þ
>WENV182821387
OKAW01000387
[OKAW] human gut metagenome; human gut
308
382
+
Asp
GTC
[ENA]
¢þ
>WENV182821426
OKAW01001479
[OKAW] human gut metagenome; human gut
311
385
+
Gln
CTG
[ENA]
¢þ
>WENV182821408
OKAW01000906
[OKAW] human gut metagenome; human gut
365
449
+
Leu
TAG
[ENA]
¢þ
>WENV182821436
OKAW01002255
[OKAW] human gut metagenome; human gut
369
296
-
Arg
CCT
[ENA]
¢þ
>WENV182821379
OKAW01000220
[OKAW] human gut metagenome; human gut
376
459
+
Leu
TAG
[ENA]
¢þ
>WENV182821400
OKAW01000700
[OKAW] human gut metagenome; human gut
380
454
+
Arg
TCT
[ENA]
¢þ
>WENV182821421
OKAW01001122
[OKAW] human gut metagenome; human gut
404
333
-
Gly
CCC
[ENA]
¢þ
>WENV182821429
OKAW01001764
[OKAW] human gut metagenome; human gut
409
492
+
Leu
CAG
[ENA]
¢þ
>WENV182821394
OKAW01000489
[OKAW] human gut metagenome; human gut
424
350
-
Val
TAC
[ENA]
¢þ
>WENV182821388
OKAW01000387
[OKAW] human gut metagenome; human gut
442
519
+
Phe
GAA
[ENA]
¢þ
>WENV182821439
OKAW01002543
[OKAW] human gut metagenome; human gut
504
424
-
Leu
TAA
[ENA]
¢þ
>WENV182821437
OKAW01002310
[OKAW] human gut metagenome; human gut
514
599
+
Ser
TGA
[ENA]
¢þ
>WENV182821409
OKAW01000906
[OKAW] human gut metagenome; human gut
517
588
+
Gly
GCC
[ENA]
¢þ
>WENV182821385
OKAW01000283
[OKAW] human gut metagenome; human gut
547
473
-
Ile2
CAT
[ENA]
¢þ
>WENV182821410
OKAW01000906
[OKAW] human gut metagenome; human gut
599
686
+
Leu
TAA
[ENA]
¢þ
>WENV182821433
OKAW01001992
[OKAW] human gut metagenome; human gut
651
736
+
Ser
CGA
[ENA]
¢þ
>WENV182821419
OKAW01001078
[OKAW] human gut metagenome; human gut
676
750
+
Arg
ACG
[ENA]
¢þ
>WENV182821430
OKAW01001792
[OKAW] human gut metagenome; human gut
680
754
+
Pro
CGG
[ENA]
¢þ
>WENV182821411
OKAW01000906
[OKAW] human gut metagenome; human gut
776
849
+
Pro
TGG
[ENA]
¢þ
>WENV182821403
OKAW01000845
[OKAW] human gut metagenome; human gut
833
757
-
Asp
GTC
[ENA]
¢þ
>WENV182821389
OKAW01000399
[OKAW] human gut metagenome; human gut
852
927
+
Arg
TCT
[ENA]
¢þ
>WENV182821428
OKAW01001529
[OKAW] human gut metagenome; human gut
869
951
+
Tyr
GTA
[ENA]
¢þ
>WENV182821423
OKAW01001230
[OKAW] human gut metagenome; human gut
888
813
-
Arg
CCG
[ENA]
¢þ
>WENV182821377
OKAW01000198
[OKAW] human gut metagenome; human gut
907
832
-
Thr
TGT
[ENA]
¢þ
>WENV182821412
OKAW01000906
[OKAW] human gut metagenome; human gut
961
1037
+
Ile2
CAT
[ENA]
¢þ
>WENV182821413
OKAW01000906
[OKAW] human gut metagenome; human gut
1083
1158
+
fMet
CAT
[ENA]
¢þ
>WENV182821414
OKAW01000906
[OKAW] human gut metagenome; human gut
1164
1240
+
Asp
GTC
[ENA]
¢þ
>WENV182821418
OKAW01000957
[OKAW] human gut metagenome; human gut
1212
1285
+
Lys
TTT
[ENA]
¢þ
>WENV182821361
OKAW01000020
[OKAW] human gut metagenome; human gut
1275
1202
-
Gly
TCC
[ENA]
¢þ
>WENV182821415
OKAW01000906
[OKAW] human gut metagenome; human gut
1281
1355
+
Phe
GAA
[ENA]
¢þ
>WENV182821364
OKAW01000050
[OKAW] human gut metagenome; human gut
1334
1249
-
Ser
TGA
[ENA]
¢þ
>WENV182821416
OKAW01000906
[OKAW] human gut metagenome; human gut
1374
1444
+
Gly
TCC
[ENA]
¢þ
>WENV182821401
OKAW01000755
[OKAW] human gut metagenome; human gut
1413
1501
+
Ser
GCT
[ENA]
¢þ
>WENV182821417
OKAW01000906
[OKAW] human gut metagenome; human gut
1458
1533
+
Ile
GAT
[ENA]
¢þ
>WENV182821367
OKAW01000110
[OKAW] human gut metagenome; human gut
1463
1387
-
Ile
GAT
[ENA]
¢þ
>WENV182821378
OKAW01000208
[OKAW] human gut metagenome; human gut
1480
1406
-
Leu
TAA
[ENA]
¢þ
>WENV182821404
OKAW01000855
[OKAW] human gut metagenome; human gut
1558
1634
+
Ile
GAT
[ENA]
¢þ
>WENV182821397
OKAW01000599
[OKAW] human gut metagenome; human gut
1566
1479
-
Ser
GGA
[ENA]
¢þ
>WENV182821381
OKAW01000264
[OKAW] human gut metagenome; human gut
1641
1557
-
Leu
CAA
[ENA]
¢þ
>WENV182821391
OKAW01000468
[OKAW] human gut metagenome; human gut
1743
1824
+
Tyr
GTA
[ENA]
¢þ
>WENV182821395
OKAW01000574
[OKAW] human gut metagenome; human gut
1750
1839
+
Leu
GAG
[ENA]
¢þ
>WENV182821396
OKAW01000597
[OKAW] human gut metagenome; human gut
1809
1735
-
Ala
CGC
[ENA]
¢þ
>WENV182821398
OKAW01000604
[OKAW] human gut metagenome; human gut
1830
1756
-
Lys
CTT
[ENA]
¢þ
>WENV182821376
OKAW01000187
[OKAW] human gut metagenome; human gut
1934
1861
-
Arg
CCG
[ENA]
¢þ
>WENV182821386
OKAW01000334
[OKAW] human gut metagenome; human gut
1958
1883
-
His
GTG
[ENA]
¢þ
>WENV182821399
OKAW01000625
[OKAW] human gut metagenome; human gut
1985
1912
-
Asn
GTT
[ENA]
¢þ
>WENV182821392
OKAW01000468
[OKAW] human gut metagenome; human gut
2028
2101
+
Thr
GGT
[ENA]
¢þ
>WENV182821393
OKAW01000468
[OKAW] human gut metagenome; human gut
2164
2238
+
Met
CAT
[ENA]
¢þ
>WENV182821380
OKAW01000235
[OKAW] human gut metagenome; human gut
2218
2293
+
His
GTG
[ENA]
¢þ
>WENV182821384
OKAW01000277
[OKAW] human gut metagenome; human gut
2222
2149
-
Arg
ACG
[ENA]
¢þ
>WENV182821383
OKAW01000277
[OKAW] human gut metagenome; human gut
2521
2431
-
Ser
GCT
[ENA]
¢þ
>WENV182821375
OKAW01000185
[OKAW] human gut metagenome; human gut
2580
2659
+
Gln
TTG
[ENA]
¢þ
>WENV182821390
OKAW01000411
[OKAW] human gut metagenome; human gut
2718
2644
-
Lys
CTT
[ENA]
¢þ
>WENV182821373
OKAW01000160
[OKAW] human gut metagenome; human gut
2839
2765
-
Val
CAC
[ENA]
¢þ
>WENV182821366
OKAW01000098
[OKAW] human gut metagenome; human gut
2984
3057
+
Trp
CCA
[ENA]
¢þ
>WENV182821363
OKAW01000049
[OKAW] human gut metagenome; human gut
3123
3049
-
Arg
CCT
[ENA]
¢þ
>WENV182821374
OKAW01000165
[OKAW] human gut metagenome; human gut
3169
3095
-
Lys
TTT
[ENA]
¢þ
>WENV182821370
OKAW01000160
[OKAW] human gut metagenome; human gut
3339
3412
+
Gly
GCC
[ENA]
¢þ
>WENV182821382
OKAW01000271
[OKAW] human gut metagenome; human gut
3371
3458
+
Ser
GGA
[ENA]
¢þ
>WENV182821371
OKAW01000160
[OKAW] human gut metagenome; human gut
3440
3511
+
Cys
GCA
[ENA]
¢þ
>WENV182821372
OKAW01000160
[OKAW] human gut metagenome; human gut
3512
3586
+
Val
GAC
[ENA]
¢þ
>WENV182821369
OKAW01000143
[OKAW] human gut metagenome; human gut
4564
4651
+
Ser
CGA
[ENA]
¢þ
>WENV182821368
OKAW01000129
[OKAW] human gut metagenome; human gut
4869
4942
+
Ala
TGC
[ENA]
¢þ
>WENV182821365
OKAW01000057
[OKAW] human gut metagenome; human gut
5400
5476
+
Pro
CGG
[ENA]
¢þ
>WENV182821362
OKAW01000033
[OKAW] human gut metagenome; human gut
7661
7586
-
Thr
CGT
[ENA]
¢þ
>WENV182821360
OKAW01000020
[OKAW] human gut metagenome; human gut
8592
8518
-
Pro
TGG
[ENA]
¢þ
>WENV182821359
OKAW01000011
[OKAW] human gut metagenome; human gut
10837
10764
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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