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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKAX] human gut metagenome; human gut
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182821545
OKAX01001325
[OKAX] human gut metagenome; human gut
32
108
+
Asp
GTC
[ENA]
¢þ
>WENV182821550
OKAX01001934
[OKAX] human gut metagenome; human gut
67
141
+
Val
TAC
[ENA]
¢þ
>WENV182821546
OKAX01001325
[OKAX] human gut metagenome; human gut
110
180
+
Gly
TCC
[ENA]
¢þ
>WENV182821484
OKAX01000040
[OKAX] human gut metagenome; human gut
117
192
+
Trp
CCA
[ENA]
¢þ
>WENV182821556
OKAX01002857
[OKAX] human gut metagenome; human gut
131
206
+
Glu
TTC
[ENA]
¢þ
>WENV182821551
OKAX01001934
[OKAX] human gut metagenome; human gut
151
226
+
Asp
GTC
[ENA]
¢þ
>WENV182821544
OKAX01001125
[OKAX] human gut metagenome; human gut
164
93
-
Trp
CCA
[ENA]
¢þ
>WENV182821547
OKAX01001325
[OKAX] human gut metagenome; human gut
194
267
+
Ile
GAT
[ENA]
¢þ
>WENV182821552
OKAX01001934
[OKAX] human gut metagenome; human gut
272
344
+
Phe
GAA
[ENA]
¢þ
>WENV182821548
OKAX01001325
[OKAX] human gut metagenome; human gut
277
366
+
Ser
GCT
[ENA]
¢þ
>WENV182821532
OKAX01000476
[OKAX] human gut metagenome; human gut
329
241
-
Ser
TGA
[ENA]
¢þ
>WENV182821553
OKAX01001934
[OKAX] human gut metagenome; human gut
349
431
+
Tyr
GTA
[ENA]
¢þ
>WENV182821554
OKAX01001934
[OKAX] human gut metagenome; human gut
435
508
+
Trp
CCA
[ENA]
¢þ
>WENV182821533
OKAX01000548
[OKAX] human gut metagenome; human gut
527
456
-
Trp
CCA
[ENA]
¢þ
>WENV182821555
OKAX01001934
[OKAX] human gut metagenome; human gut
545
618
+
His
GTG
[ENA]
¢þ
>WENV182821529
OKAX01000254
[OKAX] human gut metagenome; human gut
548
475
-
Ile2
CAT
[ENA]
¢þ
>WENV182821534
OKAX01000668
[OKAX] human gut metagenome; human gut
580
654
+
Asn
GTT
[ENA]
¢þ
>WENV182821522
OKAX01000148
[OKAX] human gut metagenome; human gut
600
526
-
Arg
CCG
[ENA]
¢þ
>WENV182821542
OKAX01000744
[OKAX] human gut metagenome; human gut
603
678
+
Asn
GTT
[ENA]
¢þ
>WENV182821516
OKAX01000108
[OKAX] human gut metagenome; human gut
627
551
-
Met
CAT
[ENA]
¢þ
>WENV182821535
OKAX01000668
[OKAX] human gut metagenome; human gut
655
728
+
Glu
TTC
[ENA]
¢þ
>WENV182821515
OKAX01000108
[OKAX] human gut metagenome; human gut
708
633
-
Thr
GGT
[ENA]
¢þ
>WENV182821536
OKAX01000668
[OKAX] human gut metagenome; human gut
734
809
+
Val
TAC
[ENA]
¢þ
>WENV182821549
OKAX01001472
[OKAX] human gut metagenome; human gut
750
675
-
Ala
TGC
[ENA]
¢þ
>WENV182821543
OKAX01000842
[OKAX] human gut metagenome; human gut
808
883
+
Arg
TCT
[ENA]
¢þ
>WENV182821514
OKAX01000108
[OKAX] human gut metagenome; human gut
815
740
-
fMet
CAT
[ENA]
¢þ
>WENV182821537
OKAX01000668
[OKAX] human gut metagenome; human gut
816
891
+
Thr
TGT
[ENA]
¢þ
>WENV182821530
OKAX01000331
[OKAX] human gut metagenome; human gut
878
805
-
Gly
CCC
[ENA]
¢þ
>WENV182821538
OKAX01000668
[OKAX] human gut metagenome; human gut
896
979
+
Tyr
GTA
[ENA]
¢þ
>WENV182821513
OKAX01000108
[OKAX] human gut metagenome; human gut
905
821
-
Tyr
GTA
[ENA]
¢þ
>WENV182821539
OKAX01000668
[OKAX] human gut metagenome; human gut
983
1056
+
Gln
TTG
[ENA]
¢þ
>WENV182821512
OKAX01000108
[OKAX] human gut metagenome; human gut
991
916
-
Thr
TGT
[ENA]
¢þ
>WENV182821540
OKAX01000668
[OKAX] human gut metagenome; human gut
1061
1134
+
Cys
GCA
[ENA]
¢þ
>WENV182821541
OKAX01000668
[OKAX] human gut metagenome; human gut
1259
1342
+
Leu
CAA
[ENA]
¢þ
>WENV182821531
OKAX01000387
[OKAX] human gut metagenome; human gut
1385
1458
+
Arg
CCG
[ENA]
¢þ
>WENV182821468
OKAX01000023
[OKAX] human gut metagenome; human gut
2208
2123
-
Leu
CAG
[ENA]
¢þ
>WENV182821467
OKAX01000023
[OKAX] human gut metagenome; human gut
2326
2241
-
Leu
CAG
[ENA]
¢þ
>WENV182821466
OKAX01000023
[OKAX] human gut metagenome; human gut
2441
2355
-
Leu
CAG
[ENA]
¢þ
>WENV182821483
OKAX01000037
[OKAX] human gut metagenome; human gut
2621
2696
+
Ile2
CAT
[ENA]
¢þ
>WENV182821527
OKAX01000252
[OKAX] human gut metagenome; human gut
2763
2838
+
Val
TAC
[ENA]
¢þ
>WENV182821528
OKAX01000252
[OKAX] human gut metagenome; human gut
2886
2961
+
Val
TAC
[ENA]
¢þ
>WENV182821524
OKAX01000211
[OKAX] human gut metagenome; human gut
3454
3529
+
Thr
TGT
[ENA]
¢þ
>WENV182821525
OKAX01000211
[OKAX] human gut metagenome; human gut
3538
3622
+
Tyr
GTA
[ENA]
¢þ
>WENV182821526
OKAX01000211
[OKAX] human gut metagenome; human gut
3737
3811
+
Gly
TCC
[ENA]
¢þ
>WENV182821523
OKAX01000167
[OKAX] human gut metagenome; human gut
5507
5583
+
Arg
CCT
[ENA]
¢þ
>WENV182821517
OKAX01000109
[OKAX] human gut metagenome; human gut
6118
6043
-
Lys
CTT
[ENA]
¢þ
>WENV182821504
OKAX01000068
[OKAX] human gut metagenome; human gut
6223
6133
-
Ser
CGA
[ENA]
¢þ
>WENV182821500
OKAX01000067
[OKAX] human gut metagenome; human gut
9467
9540
+
Gly
CCC
[ENA]
¢þ
>WENV182821519
OKAX01000128
[OKAX] human gut metagenome; human gut
11415
11490
+
His
GTG
[ENA]
¢þ
>WENV182821520
OKAX01000128
[OKAX] human gut metagenome; human gut
11515
11589
+
Gln
TTG
[ENA]
¢þ
>WENV182821521
OKAX01000128
[OKAX] human gut metagenome; human gut
11594
11669
+
Lys
TTT
[ENA]
¢þ
>WENV182821518
OKAX01000121
[OKAX] human gut metagenome; human gut
12002
12077
+
Phe
GAA
[ENA]
¢þ
>WENV182821511
OKAX01000103
[OKAX] human gut metagenome; human gut
17410
17336
-
Gln
CTG
[ENA]
¢þ
>WENV182821510
OKAX01000103
[OKAX] human gut metagenome; human gut
17521
17447
-
Gln
CTG
[ENA]
¢þ
>WENV182821509
OKAX01000103
[OKAX] human gut metagenome; human gut
17641
17565
-
Met
CAT
[ENA]
¢þ
>WENV182821508
OKAX01000103
[OKAX] human gut metagenome; human gut
17737
17663
-
Gln
TTG
[ENA]
¢þ
>WENV182821507
OKAX01000103
[OKAX] human gut metagenome; human gut
17849
17775
-
Gln
TTG
[ENA]
¢þ
>WENV182821506
OKAX01000103
[OKAX] human gut metagenome; human gut
17957
17873
-
Leu
TAG
[ENA]
¢þ
>WENV182821505
OKAX01000103
[OKAX] human gut metagenome; human gut
18043
17967
-
Met
CAT
[ENA]
¢þ
>WENV182821489
OKAX01000042
[OKAX] human gut metagenome; human gut
25629
25719
+
Ser
GGA
[ENA]
¢þ
>WENV182821491
OKAX01000066
[OKAX] human gut metagenome; human gut
26119
26193
+
Gly
GCC
[ENA]
¢þ
>WENV182821492
OKAX01000066
[OKAX] human gut metagenome; human gut
26199
26274
+
Asn
GTT
[ENA]
¢þ
>WENV182821493
OKAX01000066
[OKAX] human gut metagenome; human gut
26278
26353
+
Lys
TTT
[ENA]
¢þ
>WENV182821494
OKAX01000066
[OKAX] human gut metagenome; human gut
26359
26433
+
Glu
TTC
[ENA]
¢þ
>WENV182821495
OKAX01000066
[OKAX] human gut metagenome; human gut
26439
26514
+
Val
TAC
[ENA]
¢þ
>WENV182821496
OKAX01000066
[OKAX] human gut metagenome; human gut
26518
26592
+
Gly
GCC
[ENA]
¢þ
>WENV182821497
OKAX01000066
[OKAX] human gut metagenome; human gut
26598
26673
+
Asn
GTT
[ENA]
¢þ
>WENV182821465
OKAX01000021
[OKAX] human gut metagenome; human gut
26665
26591
-
Ile2
CAT
[ENA]
¢þ
>WENV182821498
OKAX01000066
[OKAX] human gut metagenome; human gut
26682
26756
+
Glu
TTC
[ENA]
¢þ
>WENV182821499
OKAX01000066
[OKAX] human gut metagenome; human gut
26762
26837
+
Val
TAC
[ENA]
¢þ
>WENV182821501
OKAX01000068
[OKAX] human gut metagenome; human gut
27356
27432
+
Pro
TGG
[ENA]
¢þ
>WENV182821445
OKAX01000003
[OKAX] human gut metagenome; human gut
27426
27502
+
Pro
GGG
[ENA]
¢þ
>WENV182821502
OKAX01000068
[OKAX] human gut metagenome; human gut
27443
27516
+
Gly
TCC
[ENA]
¢þ
>WENV182821503
OKAX01000068
[OKAX] human gut metagenome; human gut
27622
27698
+
Arg
TCT
[ENA]
¢þ
>WENV182821490
OKAX01000061
[OKAX] human gut metagenome; human gut
31829
31739
-
Ser
GCT
[ENA]
¢þ
>WENV182821485
OKAX01000040
[OKAX] human gut metagenome; human gut
34343
34419
+
Arg
CCG
[ENA]
¢þ
>WENV182821486
OKAX01000040
[OKAX] human gut metagenome; human gut
34476
34551
+
His
GTG
[ENA]
¢þ
>WENV182821487
OKAX01000040
[OKAX] human gut metagenome; human gut
34572
34657
+
Leu
CAG
[ENA]
¢þ
>WENV182821488
OKAX01000040
[OKAX] human gut metagenome; human gut
34699
34775
+
Pro
TGG
[ENA]
¢þ
>WENV182821461
OKAX01000014
[OKAX] human gut metagenome; human gut
37880
37964
+
Leu
CAA
[ENA]
¢þ
>WENV182821455
OKAX01000009
[OKAX] human gut metagenome; human gut
39295
39208
-
Ser
TGA
[ENA]
¢þ
>WENV182821460
OKAX01000013
[OKAX] human gut metagenome; human gut
40906
40982
+
Arg
TCT
[ENA]
¢þ
>WENV182821474
OKAX01000026
[OKAX] human gut metagenome; human gut
43324
43236
-
Leu
TAA
[ENA]
¢þ
>WENV182821473
OKAX01000026
[OKAX] human gut metagenome; human gut
43413
43339
-
Cys
GCA
[ENA]
¢þ
>WENV182821472
OKAX01000026
[OKAX] human gut metagenome; human gut
43497
43423
-
Gly
GCC
[ENA]
¢þ
>WENV182821471
OKAX01000026
[OKAX] human gut metagenome; human gut
43580
43505
-
Phe
GAA
[ENA]
¢þ
>WENV182821470
OKAX01000026
[OKAX] human gut metagenome; human gut
43661
43586
-
Asp
GTC
[ENA]
¢þ
>WENV182821482
OKAX01000036
[OKAX] human gut metagenome; human gut
44546
44462
-
Leu
TAG
[ENA]
¢þ
>WENV182821463
OKAX01000016
[OKAX] human gut metagenome; human gut
51968
52043
+
Phe
GAA
[ENA]
¢þ
>WENV182821479
OKAX01000032
[OKAX] human gut metagenome; human gut
52475
52400
-
Asn
GTT
[ENA]
¢þ
>WENV182821481
OKAX01000036
[OKAX] human gut metagenome; human gut
52866
52790
-
Arg
ACG
[ENA]
¢þ
>WENV182821480
OKAX01000036
[OKAX] human gut metagenome; human gut
53054
52979
-
Trp
CCA
[ENA]
¢þ
>WENV182821477
OKAX01000032
[OKAX] human gut metagenome; human gut
54223
54298
+
Asn
GTT
[ENA]
¢þ
>WENV182821469
OKAX01000025
[OKAX] human gut metagenome; human gut
54572
54496
-
Asp
GTC
[ENA]
¢þ
>WENV182821478
OKAX01000032
[OKAX] human gut metagenome; human gut
56735
56810
+
Asn
GTT
[ENA]
¢þ
>WENV182821443
OKAX01000002
[OKAX] human gut metagenome; human gut
60860
60936
+
Val
GAC
[ENA]
¢þ
>WENV182821444
OKAX01000002
[OKAX] human gut metagenome; human gut
60941
61017
+
Val
GAC
[ENA]
¢þ
>WENV182821476
OKAX01000030
[OKAX] human gut metagenome; human gut
62317
62400
+
Leu
CAA
[ENA]
¢þ
>WENV182821475
OKAX01000029
[OKAX] human gut metagenome; human gut
64781
64706
-
Lys
TTT
[ENA]
¢þ
>WENV182821453
OKAX01000005
[OKAX] human gut metagenome; human gut
70561
70475
-
Leu
TAA
[ENA]
¢þ
>WENV182821452
OKAX01000005
[OKAX] human gut metagenome; human gut
70647
70574
-
Cys
GCA
[ENA]
¢þ
>WENV182821451
OKAX01000005
[OKAX] human gut metagenome; human gut
70774
70699
-
Gly
GCC
[ENA]
¢þ
>WENV182821464
OKAX01000019
[OKAX] human gut metagenome; human gut
83844
83769
-
Thr
CGT
[ENA]
¢þ
>WENV182821441
OKAX01000001
[OKAX] human gut metagenome; human gut
89909
89993
+
Tyr
GTA
[ENA]
¢þ
>WENV182821442
OKAX01000001
[OKAX] human gut metagenome; human gut
90202
90286
+
Tyr
GTA
[ENA]
¢þ
>WENV182821462
OKAX01000015
[OKAX] human gut metagenome; human gut
98356
98432
+
Pro
CGG
[ENA]
¢þ
>WENV182821458
OKAX01000012
[OKAX] human gut metagenome; human gut
101080
101166
+
Leu
GAG
[ENA]
¢þ
>WENV182821459
OKAX01000012
[OKAX] human gut metagenome; human gut
103046
103122
+
fMet
CAT
[ENA]
¢þ
>WENV182821450
OKAX01000005
[OKAX] human gut metagenome; human gut
108673
108584
-
Ser
CGA
[ENA]
¢þ
>WENV182821449
OKAX01000005
[OKAX] human gut metagenome; human gut
109664
109739
+
Asn
GTT
[ENA]
¢þ
>WENV182821454
OKAX01000008
[OKAX] human gut metagenome; human gut
120794
120700
-
SeC
TCA
[ENA]
¢þ
>WENV182821456
OKAX01000010
[OKAX] human gut metagenome; human gut
135567
135659
+
Ser
GCT
[ENA]
¢þ
>WENV182821457
OKAX01000010
[OKAX] human gut metagenome; human gut
135663
135739
+
Arg
ACG
[ENA]
¢þ
>WENV182821446
OKAX01000003
[OKAX] human gut metagenome; human gut
173495
173569
+
Arg
CCT
[ENA]
¢þ
>WENV182821448
OKAX01000003
[OKAX] human gut metagenome; human gut
226316
226241
-
Ala
GGC
[ENA]
¢þ
>WENV182821447
OKAX01000003
[OKAX] human gut metagenome; human gut
226434
226359
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK