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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKBD] human gut metagenome; human gut
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822049
OKBD01000014
[OKBD] human gut metagenome; human gut
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV182822097
OKBD01000263
[OKBD] human gut metagenome; human gut
56
131
+
Trp
CCA
[ENA]
¢þ
>WENV182822101
OKBD01000618
[OKBD] human gut metagenome; human gut
172
248
+
Pro
TGG
[ENA]
¢þ
>WENV182822094
OKBD01000207
[OKBD] human gut metagenome; human gut
227
152
-
Lys
CTT
[ENA]
¢þ
>WENV182822102
OKBD01000618
[OKBD] human gut metagenome; human gut
259
332
+
Gly
TCC
[ENA]
¢þ
>WENV182822084
OKBD01000078
[OKBD] human gut metagenome; human gut
409
335
-
Arg
CCG
[ENA]
¢þ
>WENV182822105
OKBD01000826
[OKBD] human gut metagenome; human gut
438
513
+
Asp
GTC
[ENA]
¢þ
>WENV182822103
OKBD01000618
[OKBD] human gut metagenome; human gut
438
514
+
Arg
TCT
[ENA]
¢þ
>WENV182822106
OKBD01000826
[OKBD] human gut metagenome; human gut
535
610
+
Phe
GAA
[ENA]
¢þ
>WENV182822104
OKBD01000717
[OKBD] human gut metagenome; human gut
839
766
-
Gly
CCC
[ENA]
¢þ
>WENV182822100
OKBD01000535
[OKBD] human gut metagenome; human gut
1351
1261
-
Ser
GGA
[ENA]
¢þ
>WENV182822099
OKBD01000430
[OKBD] human gut metagenome; human gut
1663
1737
+
Ile2
CAT
[ENA]
¢þ
>WENV182822077
OKBD01000045
[OKBD] human gut metagenome; human gut
1766
1690
-
Pro
GGG
[ENA]
¢þ
>WENV182822095
OKBD01000255
[OKBD] human gut metagenome; human gut
2625
2701
+
Ile
GAT
[ENA]
¢þ
>WENV182822096
OKBD01000255
[OKBD] human gut metagenome; human gut
2712
2787
+
Ala
TGC
[ENA]
¢þ
>WENV182822098
OKBD01000277
[OKBD] human gut metagenome; human gut
2873
2949
+
Arg
CCT
[ENA]
¢þ
>WENV182822086
OKBD01000167
[OKBD] human gut metagenome; human gut
3052
3142
+
Ser
CGA
[ENA]
¢þ
>WENV182822087
OKBD01000180
[OKBD] human gut metagenome; human gut
3454
3529
+
Thr
TGT
[ENA]
¢þ
>WENV182822088
OKBD01000180
[OKBD] human gut metagenome; human gut
3538
3622
+
Tyr
GTA
[ENA]
¢þ
>WENV182822093
OKBD01000205
[OKBD] human gut metagenome; human gut
3616
3540
-
Met
CAT
[ENA]
¢þ
>WENV182822092
OKBD01000205
[OKBD] human gut metagenome; human gut
3697
3622
-
Thr
GGT
[ENA]
¢þ
>WENV182822089
OKBD01000180
[OKBD] human gut metagenome; human gut
3737
3811
+
Gly
TCC
[ENA]
¢þ
>WENV182822091
OKBD01000205
[OKBD] human gut metagenome; human gut
3804
3729
-
fMet
CAT
[ENA]
¢þ
>WENV182822090
OKBD01000180
[OKBD] human gut metagenome; human gut
3817
3892
+
Thr
GGT
[ENA]
¢þ
>WENV182822073
OKBD01000041
[OKBD] human gut metagenome; human gut
4352
4277
-
Phe
GAA
[ENA]
¢þ
>WENV182822085
OKBD01000124
[OKBD] human gut metagenome; human gut
5403
5487
+
Leu
TAG
[ENA]
¢þ
>WENV182822083
OKBD01000074
[OKBD] human gut metagenome; human gut
5679
5604
-
Val
TAC
[ENA]
¢þ
>WENV182822082
OKBD01000074
[OKBD] human gut metagenome; human gut
5759
5685
-
Glu
TTC
[ENA]
¢þ
>WENV182822081
OKBD01000074
[OKBD] human gut metagenome; human gut
5840
5765
-
Lys
TTT
[ENA]
¢þ
>WENV182822080
OKBD01000074
[OKBD] human gut metagenome; human gut
5919
5844
-
Asn
GTT
[ENA]
¢þ
>WENV182822079
OKBD01000074
[OKBD] human gut metagenome; human gut
5999
5925
-
Gly
GCC
[ENA]
¢þ
>WENV182822054
OKBD01000020
[OKBD] human gut metagenome; human gut
10347
10273
-
Gln
CTG
[ENA]
¢þ
>WENV182822053
OKBD01000020
[OKBD] human gut metagenome; human gut
10467
10391
-
Met
CAT
[ENA]
¢þ
>WENV182822052
OKBD01000020
[OKBD] human gut metagenome; human gut
10563
10489
-
Gln
TTG
[ENA]
¢þ
>WENV182822051
OKBD01000020
[OKBD] human gut metagenome; human gut
10671
10587
-
Leu
TAG
[ENA]
¢þ
>WENV182822050
OKBD01000020
[OKBD] human gut metagenome; human gut
10757
10681
-
Met
CAT
[ENA]
¢þ
>WENV182822078
OKBD01000049
[OKBD] human gut metagenome; human gut
15778
15853
+
Phe
GAA
[ENA]
¢þ
>WENV182822072
OKBD01000038
[OKBD] human gut metagenome; human gut
20122
20049
-
Gly
CCC
[ENA]
¢þ
>WENV182822041
OKBD01000004
[OKBD] human gut metagenome; human gut
28638
28562
-
Arg
TCT
[ENA]
¢þ
>WENV182822076
OKBD01000042
[OKBD] human gut metagenome; human gut
32140
32065
-
Ala
GGC
[ENA]
¢þ
>WENV182822056
OKBD01000021
[OKBD] human gut metagenome; human gut
34169
34093
-
Val
GAC
[ENA]
¢þ
>WENV182822055
OKBD01000021
[OKBD] human gut metagenome; human gut
34250
34174
-
Val
GAC
[ENA]
¢þ
>WENV182822074
OKBD01000042
[OKBD] human gut metagenome; human gut
34849
34924
+
Val
TAC
[ENA]
¢þ
>WENV182822075
OKBD01000042
[OKBD] human gut metagenome; human gut
34972
35047
+
Val
TAC
[ENA]
¢þ
>WENV182822066
OKBD01000029
[OKBD] human gut metagenome; human gut
35554
35629
+
Gly
GCC
[ENA]
¢þ
>WENV182822067
OKBD01000029
[OKBD] human gut metagenome; human gut
35681
35754
+
Cys
GCA
[ENA]
¢þ
>WENV182822068
OKBD01000029
[OKBD] human gut metagenome; human gut
35767
35853
+
Leu
TAA
[ENA]
¢þ
>WENV182822048
OKBD01000012
[OKBD] human gut metagenome; human gut
39295
39208
-
Ser
TGA
[ENA]
¢þ
>WENV182822071
OKBD01000034
[OKBD] human gut metagenome; human gut
42726
42800
+
Arg
CCT
[ENA]
¢þ
>WENV182822044
OKBD01000008
[OKBD] human gut metagenome; human gut
47509
47433
-
fMet
CAT
[ENA]
¢þ
>WENV182822043
OKBD01000008
[OKBD] human gut metagenome; human gut
49475
49389
-
Leu
GAG
[ENA]
¢þ
>WENV182822062
OKBD01000022
[OKBD] human gut metagenome; human gut
50038
49962
-
Pro
TGG
[ENA]
¢þ
>WENV182822061
OKBD01000022
[OKBD] human gut metagenome; human gut
50165
50080
-
Leu
CAG
[ENA]
¢þ
>WENV182822060
OKBD01000022
[OKBD] human gut metagenome; human gut
50261
50186
-
His
GTG
[ENA]
¢þ
>WENV182822059
OKBD01000022
[OKBD] human gut metagenome; human gut
50394
50318
-
Arg
CCG
[ENA]
¢þ
>WENV182822069
OKBD01000030
[OKBD] human gut metagenome; human gut
50709
50633
-
Asp
GTC
[ENA]
¢þ
>WENV182822065
OKBD01000027
[OKBD] human gut metagenome; human gut
54662
54587
-
Thr
CGT
[ENA]
¢þ
>WENV182822070
OKBD01000032
[OKBD] human gut metagenome; human gut
55526
55618
+
Ser
GCT
[ENA]
¢þ
>WENV182822064
OKBD01000025
[OKBD] human gut metagenome; human gut
65683
65608
-
Asn
GTT
[ENA]
¢þ
>WENV182822063
OKBD01000025
[OKBD] human gut metagenome; human gut
66674
66763
+
Ser
CGA
[ENA]
¢þ
>WENV182822046
OKBD01000011
[OKBD] human gut metagenome; human gut
80011
80087
+
fMet
CAT
[ENA]
¢þ
>WENV182822047
OKBD01000011
[OKBD] human gut metagenome; human gut
80240
80316
+
fMet
CAT
[ENA]
¢þ
>WENV182822058
OKBD01000022
[OKBD] human gut metagenome; human gut
84620
84545
-
Trp
CCA
[ENA]
¢þ
>WENV182822057
OKBD01000022
[OKBD] human gut metagenome; human gut
84749
84673
-
Asp
GTC
[ENA]
¢þ
>WENV182822042
OKBD01000005
[OKBD] human gut metagenome; human gut
86496
86412
-
Leu
CAA
[ENA]
¢þ
>WENV182822045
OKBD01000009
[OKBD] human gut metagenome; human gut
92944
93019
+
Ile2
CAT
[ENA]
¢þ
>WENV182822040
OKBD01000002
[OKBD] human gut metagenome; human gut
99087
99011
-
Pro
CGG
[ENA]
¢þ
>WENV182822039
OKBD01000002
[OKBD] human gut metagenome; human gut
224092
224186
+
SeC
TCA
[ENA]
¢þ
>WENV182822037
OKBD01000001
[OKBD] human gut metagenome; human gut
347332
347416
+
Tyr
GTA
[ENA]
¢þ
>WENV182822038
OKBD01000001
[OKBD] human gut metagenome; human gut
347625
347709
+
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK