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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKBF] human gut metagenome; human gut
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822227
OKBF01000055
[OKBF] human gut metagenome; human gut
106
181
+
Val
TAC
[ENA]
¢þ
>WENV182822250
OKBF01000279
[OKBF] human gut metagenome; human gut
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV182822251
OKBF01000359
[OKBF] human gut metagenome; human gut
694
619
-
Phe
GAA
[ENA]
¢þ
>WENV182822247
OKBF01000220
[OKBF] human gut metagenome; human gut
1219
1293
+
Val
TAC
[ENA]
¢þ
>WENV182822183
OKBF01000016
[OKBF] human gut metagenome; human gut
1226
1150
-
Arg
TCT
[ENA]
¢þ
>WENV182822248
OKBF01000220
[OKBF] human gut metagenome; human gut
1299
1372
+
Lys
TTT
[ENA]
¢þ
>WENV182822249
OKBF01000220
[OKBF] human gut metagenome; human gut
1381
1462
+
Leu
TAG
[ENA]
¢þ
>WENV182822246
OKBF01000164
[OKBF] human gut metagenome; human gut
1475
1551
+
Arg
TCT
[ENA]
¢þ
>WENV182822244
OKBF01000143
[OKBF] human gut metagenome; human gut
2202
2278
+
Ile
GAT
[ENA]
¢þ
>WENV182822245
OKBF01000143
[OKBF] human gut metagenome; human gut
2307
2381
+
Ala
TGC
[ENA]
¢þ
>WENV182822242
OKBF01000120
[OKBF] human gut metagenome; human gut
2775
2850
+
Ile2
CAT
[ENA]
¢þ
>WENV182822232
OKBF01000078
[OKBF] human gut metagenome; human gut
2905
2831
-
Thr
TGT
[ENA]
¢þ
>WENV182822243
OKBF01000120
[OKBF] human gut metagenome; human gut
2951
3025
+
Arg
TCT
[ENA]
¢þ
>WENV182822210
OKBF01000032
[OKBF] human gut metagenome; human gut
3478
3394
-
Leu
CAA
[ENA]
¢þ
>WENV182822236
OKBF01000084
[OKBF] human gut metagenome; human gut
6471
6388
-
Tyr
GTA
[ENA]
¢þ
>WENV182822241
OKBF01000115
[OKBF] human gut metagenome; human gut
6588
6661
+
Phe
GAA
[ENA]
¢þ
>WENV182822212
OKBF01000033
[OKBF] human gut metagenome; human gut
7247
7174
-
Lys
TTT
[ENA]
¢þ
>WENV182822195
OKBF01000022
[OKBF] human gut metagenome; human gut
7462
7388
-
Ile2
CAT
[ENA]
¢þ
>WENV182822240
OKBF01000112
[OKBF] human gut metagenome; human gut
8203
8279
+
Asp
GTC
[ENA]
¢þ
>WENV182822221
OKBF01000041
[OKBF] human gut metagenome; human gut
9496
9422
-
Met
CAT
[ENA]
¢þ
>WENV182822233
OKBF01000079
[OKBF] human gut metagenome; human gut
9943
10030
+
Ser
GCT
[ENA]
¢þ
>WENV182822234
OKBF01000079
[OKBF] human gut metagenome; human gut
10108
10180
+
Glu
CTC
[ENA]
¢þ
>WENV182822230
OKBF01000060
[OKBF] human gut metagenome; human gut
14912
14839
-
fMet
CAT
[ENA]
¢þ
>WENV182822172
OKBF01000010
[OKBF] human gut metagenome; human gut
16033
16117
+
Leu
CAA
[ENA]
¢þ
>WENV182822239
OKBF01000098
[OKBF] human gut metagenome; human gut
17369
17295
-
Gly
TCC
[ENA]
¢þ
>WENV182822238
OKBF01000098
[OKBF] human gut metagenome; human gut
17448
17373
-
Thr
TGT
[ENA]
¢þ
>WENV182822237
OKBF01000098
[OKBF] human gut metagenome; human gut
17604
17529
-
Ile2
CAT
[ENA]
¢þ
>WENV182822231
OKBF01000067
[OKBF] human gut metagenome; human gut
20191
20264
+
Thr
CGT
[ENA]
¢þ
>WENV182822141
OKBF01000001
[OKBF] human gut metagenome; human gut
22999
22927
-
Glu
TTC
[ENA]
¢þ
>WENV182822218
OKBF01000036
[OKBF] human gut metagenome; human gut
23657
23732
+
Thr
CGT
[ENA]
¢þ
>WENV182822235
OKBF01000080
[OKBF] human gut metagenome; human gut
26705
26779
+
Thr
TGT
[ENA]
¢þ
>WENV182822164
OKBF01000007
[OKBF] human gut metagenome; human gut
31643
31718
+
Ile2
CAT
[ENA]
¢þ
>WENV182822222
OKBF01000042
[OKBF] human gut metagenome; human gut
38055
38129
+
Asp
GTC
[ENA]
¢þ
>WENV182822223
OKBF01000042
[OKBF] human gut metagenome; human gut
38159
38233
+
Asp
GTC
[ENA]
¢þ
>WENV182822193
OKBF01000021
[OKBF] human gut metagenome; human gut
40834
40761
-
Gly
CCC
[ENA]
¢þ
>WENV182822219
OKBF01000040
[OKBF] human gut metagenome; human gut
41589
41513
-
Pro
CGG
[ENA]
¢þ
>WENV182822142
OKBF01000002
[OKBF] human gut metagenome; human gut
44357
44432
+
Pro
TGG
[ENA]
¢þ
>WENV182822143
OKBF01000002
[OKBF] human gut metagenome; human gut
44468
44543
+
Pro
TGG
[ENA]
¢þ
>WENV182822197
OKBF01000023
[OKBF] human gut metagenome; human gut
45213
45138
-
Pro
GGG
[ENA]
¢þ
>WENV182822180
OKBF01000014
[OKBF] human gut metagenome; human gut
50490
50575
+
Ser
TGA
[ENA]
¢þ
>WENV182822228
OKBF01000059
[OKBF] human gut metagenome; human gut
53640
53714
+
Asn
GTT
[ENA]
¢þ
>WENV182822229
OKBF01000059
[OKBF] human gut metagenome; human gut
53743
53817
+
Asn
GTT
[ENA]
¢þ
>WENV182822225
OKBF01000045
[OKBF] human gut metagenome; human gut
55717
55793
+
Pro
GGG
[ENA]
¢þ
>WENV182822162
OKBF01000006
[OKBF] human gut metagenome; human gut
65233
65307
+
His
GTG
[ENA]
¢þ
>WENV182822209
OKBF01000031
[OKBF] human gut metagenome; human gut
65824
65749
-
Asn
GTT
[ENA]
¢þ
>WENV182822179
OKBF01000013
[OKBF] human gut metagenome; human gut
66104
66198
+
SeC
TCA
[ENA]
¢þ
>WENV182822205
OKBF01000031
[OKBF] human gut metagenome; human gut
67573
67648
+
Asn
GTT
[ENA]
¢þ
>WENV182822206
OKBF01000031
[OKBF] human gut metagenome; human gut
69982
70057
+
Asn
GTT
[ENA]
¢þ
>WENV182822204
OKBF01000026
[OKBF] human gut metagenome; human gut
70830
70742
-
Ser
GGA
[ENA]
¢þ
>WENV182822152
OKBF01000004
[OKBF] human gut metagenome; human gut
71756
71830
+
Arg
CCT
[ENA]
¢þ
>WENV182822217
OKBF01000034
[OKBF] human gut metagenome; human gut
77966
77890
-
Pro
TGG
[ENA]
¢þ
>WENV182822216
OKBF01000034
[OKBF] human gut metagenome; human gut
78095
78009
-
Leu
CAG
[ENA]
¢þ
>WENV182822215
OKBF01000034
[OKBF] human gut metagenome; human gut
78191
78116
-
His
GTG
[ENA]
¢þ
>WENV182822214
OKBF01000034
[OKBF] human gut metagenome; human gut
78326
78250
-
Arg
CCG
[ENA]
¢þ
>WENV182822147
OKBF01000003
[OKBF] human gut metagenome; human gut
78542
78617
+
Gly
GCC
[ENA]
¢þ
>WENV182822148
OKBF01000003
[OKBF] human gut metagenome; human gut
78671
78744
+
Cys
GCA
[ENA]
¢þ
>WENV182822149
OKBF01000003
[OKBF] human gut metagenome; human gut
78757
78843
+
Leu
TAA
[ENA]
¢þ
>WENV182822211
OKBF01000033
[OKBF] human gut metagenome; human gut
79238
79312
+
Asp
GTC
[ENA]
¢þ
>WENV182822226
OKBF01000048
[OKBF] human gut metagenome; human gut
81489
81564
+
Val
TAC
[ENA]
¢þ
>WENV182822184
OKBF01000017
[OKBF] human gut metagenome; human gut
83455
83528
+
Trp
CCA
[ENA]
¢þ
>WENV182822220
OKBF01000041
[OKBF] human gut metagenome; human gut
84927
84854
-
Lys
TTT
[ENA]
¢þ
>WENV182822177
OKBF01000012
[OKBF] human gut metagenome; human gut
86594
86681
+
Ser
TGA
[ENA]
¢þ
>WENV182822168
OKBF01000008
[OKBF] human gut metagenome; human gut
86626
86542
-
Tyr
GTA
[ENA]
¢þ
>WENV182822167
OKBF01000008
[OKBF] human gut metagenome; human gut
86744
86660
-
Tyr
GTA
[ENA]
¢þ
>WENV182822196
OKBF01000023
[OKBF] human gut metagenome; human gut
89825
89896
+
Gln
CTG
[ENA]
¢þ
>WENV182822224
OKBF01000044
[OKBF] human gut metagenome; human gut
92974
93061
+
Ser
GGA
[ENA]
¢þ
>WENV182822191
OKBF01000019
[OKBF] human gut metagenome; human gut
100571
100497
-
Gln
CTG
[ENA]
¢þ
>WENV182822190
OKBF01000019
[OKBF] human gut metagenome; human gut
100683
100609
-
Gln
CTG
[ENA]
¢þ
>WENV182822189
OKBF01000019
[OKBF] human gut metagenome; human gut
100808
100732
-
Met
CAT
[ENA]
¢þ
>WENV182822188
OKBF01000019
[OKBF] human gut metagenome; human gut
100898
100824
-
Gln
TTG
[ENA]
¢þ
>WENV182822187
OKBF01000019
[OKBF] human gut metagenome; human gut
101007
100933
-
Gln
TTG
[ENA]
¢þ
>WENV182822186
OKBF01000019
[OKBF] human gut metagenome; human gut
101115
101031
-
Leu
TAG
[ENA]
¢þ
>WENV182822185
OKBF01000019
[OKBF] human gut metagenome; human gut
101202
101126
-
Met
CAT
[ENA]
¢þ
>WENV182822144
OKBF01000002
[OKBF] human gut metagenome; human gut
105043
105116
+
Lys
CTT
[ENA]
¢þ
>WENV182822194
OKBF01000022
[OKBF] human gut metagenome; human gut
107800
107872
+
Arg
CCT
[ENA]
¢þ
>WENV182822145
OKBF01000002
[OKBF] human gut metagenome; human gut
108405
108478
+
Lys
CTT
[ENA]
¢þ
>WENV182822208
OKBF01000031
[OKBF] human gut metagenome; human gut
109947
109872
-
Asn
GTT
[ENA]
¢þ
>WENV182822157
OKBF01000005
[OKBF] human gut metagenome; human gut
110057
110130
+
Gly
CCC
[ENA]
¢þ
>WENV182822207
OKBF01000031
[OKBF] human gut metagenome; human gut
110939
111028
+
Ser
CGA
[ENA]
¢þ
>WENV182822213
OKBF01000034
[OKBF] human gut metagenome; human gut
112870
112795
-
Trp
CCA
[ENA]
¢þ
>WENV182822203
OKBF01000025
[OKBF] human gut metagenome; human gut
121242
121169
-
Gly
GCC
[ENA]
¢þ
>WENV182822202
OKBF01000025
[OKBF] human gut metagenome; human gut
121331
121249
-
Leu
CAG
[ENA]
¢þ
>WENV182822201
OKBF01000025
[OKBF] human gut metagenome; human gut
121469
121396
-
Gly
GCC
[ENA]
¢þ
>WENV182822200
OKBF01000025
[OKBF] human gut metagenome; human gut
121575
121491
-
Leu
GAG
[ENA]
¢þ
>WENV182822199
OKBF01000025
[OKBF] human gut metagenome; human gut
121694
121612
-
Leu
CAG
[ENA]
¢þ
>WENV182822198
OKBF01000025
[OKBF] human gut metagenome; human gut
121792
121719
-
Gly
GCC
[ENA]
¢þ
>WENV182822181
OKBF01000014
[OKBF] human gut metagenome; human gut
122287
122372
+
Ser
TGA
[ENA]
¢þ
>WENV182822163
OKBF01000006
[OKBF] human gut metagenome; human gut
123835
123909
+
Ala
GGC
[ENA]
¢þ
>WENV182822156
OKBF01000004
[OKBF] human gut metagenome; human gut
124175
124100
-
Ala
GGC
[ENA]
¢þ
>WENV182822155
OKBF01000004
[OKBF] human gut metagenome; human gut
124290
124215
-
Ala
GGC
[ENA]
¢þ
>WENV182822153
OKBF01000004
[OKBF] human gut metagenome; human gut
126989
127064
+
Val
TAC
[ENA]
¢þ
>WENV182822154
OKBF01000004
[OKBF] human gut metagenome; human gut
127069
127144
+
Lys
TTT
[ENA]
¢þ
>WENV182822166
OKBF01000007
[OKBF] human gut metagenome; human gut
127369
127293
-
fMet
CAT
[ENA]
¢þ
>WENV182822165
OKBF01000007
[OKBF] human gut metagenome; human gut
131236
131150
-
Leu
GAG
[ENA]
¢þ
>WENV182822192
OKBF01000020
[OKBF] human gut metagenome; human gut
139824
139895
+
Gln
TTG
[ENA]
¢þ
>WENV182822173
OKBF01000010
[OKBF] human gut metagenome; human gut
144402
144476
+
Thr
TGT
[ENA]
¢þ
>WENV182822174
OKBF01000010
[OKBF] human gut metagenome; human gut
144550
144633
+
Tyr
GTA
[ENA]
¢þ
>WENV182822175
OKBF01000010
[OKBF] human gut metagenome; human gut
144747
144819
+
Thr
GGT
[ENA]
¢þ
>WENV182822176
OKBF01000010
[OKBF] human gut metagenome; human gut
146107
146180
+
Trp
CCA
[ENA]
¢þ
>WENV182822169
OKBF01000009
[OKBF] human gut metagenome; human gut
148483
148569
+
Leu
CAG
[ENA]
¢þ
>WENV182822170
OKBF01000009
[OKBF] human gut metagenome; human gut
148598
148684
+
Leu
CAG
[ENA]
¢þ
>WENV182822171
OKBF01000009
[OKBF] human gut metagenome; human gut
148719
148805
+
Leu
CAG
[ENA]
¢þ
>WENV182822182
OKBF01000014
[OKBF] human gut metagenome; human gut
157277
157349
+
Cys
GCA
[ENA]
¢þ
>WENV182822146
OKBF01000002
[OKBF] human gut metagenome; human gut
158606
158532
-
Arg
TCT
[ENA]
¢þ
>WENV182822178
OKBF01000012
[OKBF] human gut metagenome; human gut
181955
182042
+
Ser
GGA
[ENA]
¢þ
>WENV182822161
OKBF01000005
[OKBF] human gut metagenome; human gut
182536
182460
-
fMet
CAT
[ENA]
¢þ
>WENV182822140
OKBF01000001
[OKBF] human gut metagenome; human gut
188545
188463
-
Leu
TAG
[ENA]
¢þ
>WENV182822158
OKBF01000005
[OKBF] human gut metagenome; human gut
303505
303597
+
Ser
GCT
[ENA]
¢þ
>WENV182822159
OKBF01000005
[OKBF] human gut metagenome; human gut
303601
303677
+
Arg
ACG
[ENA]
¢þ
>WENV182822160
OKBF01000005
[OKBF] human gut metagenome; human gut
303740
303816
+
Arg
ACG
[ENA]
¢þ
>WENV182822136
OKBF01000001
[OKBF] human gut metagenome; human gut
305815
305888
+
Gly
GCC
[ENA]
¢þ
>WENV182822137
OKBF01000001
[OKBF] human gut metagenome; human gut
305902
305986
+
Leu
TAA
[ENA]
¢þ
>WENV182822151
OKBF01000003
[OKBF] human gut metagenome; human gut
316667
316591
-
Val
GAC
[ENA]
¢þ
>WENV182822150
OKBF01000003
[OKBF] human gut metagenome; human gut
316748
316672
-
Val
GAC
[ENA]
¢þ
>WENV182822139
OKBF01000001
[OKBF] human gut metagenome; human gut
317687
317614
-
Pro
CGG
[ENA]
¢þ
>WENV182822138
OKBF01000001
[OKBF] human gut metagenome; human gut
317772
317699
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK