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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKBK] human gut metagenome; human gut
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822517
OKBK01001662
[OKBK] human gut metagenome; human gut
47
133
+
Leu
TAA
[ENA]
¢þ
>WENV182822504
OKBK01000246
[OKBK] human gut metagenome; human gut
114
41
-
Gly
CCC
[ENA]
¢þ
>WENV182822523
OKBK01002061
[OKBK] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV182822513
OKBK01001048
[OKBK] human gut metagenome; human gut
214
290
+
Pro
GGG
[ENA]
¢þ
>WENV182822515
OKBK01001089
[OKBK] human gut metagenome; human gut
221
149
-
Glu
CTC
[ENA]
¢þ
>WENV182822516
OKBK01001542
[OKBK] human gut metagenome; human gut
242
317
+
Asn
GTT
[ENA]
¢þ
>WENV182822529
OKBK01002475
[OKBK] human gut metagenome; human gut
246
173
-
Lys
TTT
[ENA]
¢þ
>WENV182822535
OKBK01004446
[OKBK] human gut metagenome; human gut
256
173
-
Tyr
GTA
[ENA]
¢þ
>WENV182822520
OKBK01002000
[OKBK] human gut metagenome; human gut
291
218
-
Trp
CCA
[ENA]
¢þ
>WENV182822503
OKBK01000235
[OKBK] human gut metagenome; human gut
299
228
-
Gln
TTG
[ENA]
¢þ
>WENV182822539
OKBK01006238
[OKBK] human gut metagenome; human gut
312
388
+
Pro
CGG
[ENA]
¢þ
>WENV182822538
OKBK01006194
[OKBK] human gut metagenome; human gut
341
269
-
Cys
GCA
[ENA]
¢þ
>WENV182822505
OKBK01000263
[OKBK] human gut metagenome; human gut
378
454
+
fMet
CAT
[ENA]
¢þ
>WENV182822514
OKBK01001089
[OKBK] human gut metagenome; human gut
386
299
-
Ser
GCT
[ENA]
¢þ
>WENV182822536
OKBK01005094
[OKBK] human gut metagenome; human gut
395
321
-
Asp
GTC
[ENA]
¢þ
>WENV182822537
OKBK01006145
[OKBK] human gut metagenome; human gut
430
506
+
Gly
TCC
[ENA]
¢þ
>WENV182822540
OKBK01006350
[OKBK] human gut metagenome; human gut
471
396
-
Gly
GCC
[ENA]
¢þ
>WENV182822525
OKBK01002359
[OKBK] human gut metagenome; human gut
513
588
+
Ile2
CAT
[ENA]
¢þ
>WENV182822534
OKBK01003691
[OKBK] human gut metagenome; human gut
602
529
-
Gly
CCC
[ENA]
¢þ
>WENV182822526
OKBK01002359
[OKBK] human gut metagenome; human gut
669
744
+
Thr
TGT
[ENA]
¢þ
>WENV182822530
OKBK01002593
[OKBK] human gut metagenome; human gut
676
752
+
Val
GAC
[ENA]
¢þ
>WENV182822519
OKBK01001996
[OKBK] human gut metagenome; human gut
700
627
-
Pro
CGG
[ENA]
¢þ
>WENV182822524
OKBK01002097
[OKBK] human gut metagenome; human gut
713
626
-
Ser
TGA
[ENA]
¢þ
>WENV182822533
OKBK01002796
[OKBK] human gut metagenome; human gut
729
655
-
Ala
GGC
[ENA]
¢þ
>WENV182822527
OKBK01002359
[OKBK] human gut metagenome; human gut
753
837
+
Tyr
GTA
[ENA]
¢þ
>WENV182822531
OKBK01002593
[OKBK] human gut metagenome; human gut
757
833
+
Val
GAC
[ENA]
¢þ
>WENV182822518
OKBK01001996
[OKBK] human gut metagenome; human gut
785
712
-
Phe
GAA
[ENA]
¢þ
>WENV182822532
OKBK01002654
[OKBK] human gut metagenome; human gut
902
976
+
Ile2
CAT
[ENA]
¢þ
>WENV182822508
OKBK01000489
[OKBK] human gut metagenome; human gut
916
842
-
His
GTG
[ENA]
¢þ
>WENV182822528
OKBK01002359
[OKBK] human gut metagenome; human gut
954
1028
+
Gly
TCC
[ENA]
¢þ
>WENV182822509
OKBK01000591
[OKBK] human gut metagenome; human gut
983
908
-
Val
TAC
[ENA]
¢þ
>WENV182822502
OKBK01000114
[OKBK] human gut metagenome; human gut
995
1081
+
Leu
CAG
[ENA]
¢þ
>WENV182822522
OKBK01002047
[OKBK] human gut metagenome; human gut
1007
932
-
Lys
TTT
[ENA]
¢þ
>WENV182822521
OKBK01002047
[OKBK] human gut metagenome; human gut
1086
1011
-
Val
TAC
[ENA]
¢þ
>WENV182822506
OKBK01000430
[OKBK] human gut metagenome; human gut
1523
1449
-
Thr
TGT
[ENA]
¢þ
>WENV182822510
OKBK01000734
[OKBK] human gut metagenome; human gut
1541
1614
+
Gly
GCC
[ENA]
¢þ
>WENV182822511
OKBK01000734
[OKBK] human gut metagenome; human gut
1639
1721
+
Leu
CAG
[ENA]
¢þ
>WENV182822512
OKBK01000734
[OKBK] human gut metagenome; human gut
1758
1842
+
Leu
GAG
[ENA]
¢þ
>WENV182822507
OKBK01000466
[OKBK] human gut metagenome; human gut
1805
1730
-
Phe
GAA
[ENA]
¢þ
>WENV182822501
OKBK01000081
[OKBK] human gut metagenome; human gut
2220
2145
-
Glu
TTC
[ENA]
¢þ
>WENV182822499
OKBK01000012
[OKBK] human gut metagenome; human gut
2331
2407
+
Ile
GAT
[ENA]
¢þ
>WENV182822500
OKBK01000012
[OKBK] human gut metagenome; human gut
2436
2510
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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