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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKBP] human gut metagenome; human gut
HIT:
100 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182822974
OKBP01004021
[OKBP] human gut metagenome; human gut
1
75
+
Lys
TTT
[ENA]
¢þ
>WENV182822938
OKBP01000321
[OKBP] human gut metagenome; human gut
36
110
+
Pro
CGG
[ENA]
¢þ
>WENV182822953
OKBP01001722
[OKBP] human gut metagenome; human gut
64
137
+
Pro
TGG
[ENA]
¢þ
>WENV182822964
OKBP01002609
[OKBP] human gut metagenome; human gut
64
139
+
Ala
TGC
[ENA]
¢þ
>WENV182822968
OKBP01003478
[OKBP] human gut metagenome; human gut
65
141
+
Arg
TCT
[ENA]
¢þ
>WENV182822975
OKBP01004021
[OKBP] human gut metagenome; human gut
81
164
+
Leu
TAG
[ENA]
¢þ
>WENV182822943
OKBP01000923
[OKBP] human gut metagenome; human gut
83
8
-
Lys
TTT
[ENA]
¢þ
>WENV182822949
OKBP01001265
[OKBP] human gut metagenome; human gut
132
58
-
Lys
TTT
[ENA]
¢þ
>WENV182822905
OKBP01000067
[OKBP] human gut metagenome; human gut
145
71
-
Leu
CAA
[ENA]
¢þ
>WENV182822969
OKBP01003478
[OKBP] human gut metagenome; human gut
147
222
+
Lys
CTT
[ENA]
¢þ
>WENV182822963
OKBP01002263
[OKBP] human gut metagenome; human gut
150
77
-
Glu
TTC
[ENA]
¢þ
>WENV182822952
OKBP01001601
[OKBP] human gut metagenome; human gut
153
79
-
Asn
GTT
[ENA]
¢þ
>WENV182822976
OKBP01004021
[OKBP] human gut metagenome; human gut
180
255
+
Thr
TGT
[ENA]
¢þ
>WENV182822954
OKBP01002245
[OKBP] human gut metagenome; human gut
188
113
-
Thr
GGT
[ENA]
¢þ
>WENV182822948
OKBP01001265
[OKBP] human gut metagenome; human gut
213
138
-
Thr
TGT
[ENA]
¢þ
>WENV182822962
OKBP01002263
[OKBP] human gut metagenome; human gut
225
151
-
Asn
GTT
[ENA]
¢þ
>WENV182822970
OKBP01003478
[OKBP] human gut metagenome; human gut
230
305
+
His
GTG
[ENA]
¢þ
>WENV182822965
OKBP01002680
[OKBP] human gut metagenome; human gut
245
320
+
Phe
GAA
[ENA]
¢þ
>WENV182822951
OKBP01001601
[OKBP] human gut metagenome; human gut
252
178
-
Asn
GTT
[ENA]
¢þ
>WENV182822977
OKBP01004021
[OKBP] human gut metagenome; human gut
265
336
+
Gly
GCC
[ENA]
¢þ
>WENV182822947
OKBP01001265
[OKBP] human gut metagenome; human gut
295
220
-
Val
TAC
[ENA]
¢þ
>WENV182822961
OKBP01002263
[OKBP] human gut metagenome; human gut
308
235
-
Gly
TCC
[ENA]
¢þ
>WENV182822971
OKBP01003478
[OKBP] human gut metagenome; human gut
311
385
+
Gln
TTG
[ENA]
¢þ
>WENV182822966
OKBP01002680
[OKBP] human gut metagenome; human gut
326
399
+
Cys
GCA
[ENA]
¢þ
>WENV182822978
OKBP01004021
[OKBP] human gut metagenome; human gut
353
438
+
Leu
TAA
[ENA]
¢þ
>WENV182822887
OKBP01000006
[OKBP] human gut metagenome; human gut
358
273
-
Leu
CAG
[ENA]
¢þ
>WENV182822898
OKBP01000062
[OKBP] human gut metagenome; human gut
367
439
+
Asn
GTT
[ENA]
¢þ
>WENV182822972
OKBP01003478
[OKBP] human gut metagenome; human gut
389
464
+
Lys
TTT
[ENA]
¢þ
>WENV182822960
OKBP01002263
[OKBP] human gut metagenome; human gut
401
326
-
His
GTG
[ENA]
¢þ
>WENV182822979
OKBP01004021
[OKBP] human gut metagenome; human gut
448
523
+
Arg
ACG
[ENA]
¢þ
>WENV182822973
OKBP01003478
[OKBP] human gut metagenome; human gut
469
552
+
Leu
TAG
[ENA]
¢þ
>WENV182822959
OKBP01002263
[OKBP] human gut metagenome; human gut
488
414
-
Phe
GAA
[ENA]
¢þ
>WENV182822958
OKBP01002263
[OKBP] human gut metagenome; human gut
573
498
-
Asp
GTC
[ENA]
¢þ
>WENV182822946
OKBP01001060
[OKBP] human gut metagenome; human gut
615
541
-
Met
CAT
[ENA]
¢þ
>WENV182822967
OKBP01002876
[OKBP] human gut metagenome; human gut
619
530
-
Ser
GGA
[ENA]
¢þ
>WENV182822957
OKBP01002263
[OKBP] human gut metagenome; human gut
674
583
-
Ser
TGA
[ENA]
¢þ
>WENV182822932
OKBP01000206
[OKBP] human gut metagenome; human gut
711
784
+
Glu
TTC
[ENA]
¢þ
>WENV182822945
OKBP01001060
[OKBP] human gut metagenome; human gut
729
656
-
Thr
GGT
[ENA]
¢þ
>WENV182822956
OKBP01002263
[OKBP] human gut metagenome; human gut
756
683
-
Ile2
CAT
[ENA]
¢þ
>WENV182822933
OKBP01000206
[OKBP] human gut metagenome; human gut
836
910
+
Asp
GTC
[ENA]
¢þ
>WENV182822901
OKBP01000063
[OKBP] human gut metagenome; human gut
849
774
-
Arg
ACG
[ENA]
¢þ
>WENV182822955
OKBP01002263
[OKBP] human gut metagenome; human gut
857
783
-
Met
CAT
[ENA]
¢þ
>WENV182822937
OKBP01000274
[OKBP] human gut metagenome; human gut
887
959
+
Gln
TTG
[ENA]
¢þ
>WENV182822944
OKBP01001060
[OKBP] human gut metagenome; human gut
936
854
-
Tyr
GTA
[ENA]
¢þ
>WENV182822900
OKBP01000063
[OKBP] human gut metagenome; human gut
1240
1152
-
Ser
GCT
[ENA]
¢þ
>WENV182822950
OKBP01001353
[OKBP] human gut metagenome; human gut
1370
1298
-
Thr
CGT
[ENA]
¢þ
>WENV182822941
OKBP01000460
[OKBP] human gut metagenome; human gut
1551
1476
-
Thr
TGT
[ENA]
¢þ
>WENV182822929
OKBP01000199
[OKBP] human gut metagenome; human gut
1875
1949
+
Arg
TCT
[ENA]
¢þ
>WENV182822930
OKBP01000203
[OKBP] human gut metagenome; human gut
1898
1971
+
Ala
GGC
[ENA]
¢þ
>WENV182822916
OKBP01000136
[OKBP] human gut metagenome; human gut
1899
1972
+
Gly
CCC
[ENA]
¢þ
>WENV182822924
OKBP01000163
[OKBP] human gut metagenome; human gut
1973
2057
+
Leu
CAG
[ENA]
¢þ
>WENV182822931
OKBP01000203
[OKBP] human gut metagenome; human gut
2012
2085
+
Ala
GGC
[ENA]
¢þ
>WENV182822927
OKBP01000164
[OKBP] human gut metagenome; human gut
2040
1957
-
Leu
TAA
[ENA]
¢þ
>WENV182822942
OKBP01000707
[OKBP] human gut metagenome; human gut
2075
2147
+
Thr
GGT
[ENA]
¢þ
>WENV182822926
OKBP01000164
[OKBP] human gut metagenome; human gut
2148
2057
-
Ile
TAT
[ENA]
¢þ
>WENV182822925
OKBP01000164
[OKBP] human gut metagenome; human gut
2292
2217
-
Val
TAC
[ENA]
¢þ
>WENV182822939
OKBP01000354
[OKBP] human gut metagenome; human gut
2322
2233
-
Leu
GAG
[ENA]
¢þ
>WENV182822940
OKBP01000458
[OKBP] human gut metagenome; human gut
2603
2676
+
Lys
CTT
[ENA]
¢þ
>WENV182822919
OKBP01000157
[OKBP] human gut metagenome; human gut
3057
3132
+
Arg
CCG
[ENA]
¢þ
>WENV182822899
OKBP01000063
[OKBP] human gut metagenome; human gut
3260
3174
-
Ser
TGA
[ENA]
¢þ
>WENV182822936
OKBP01000268
[OKBP] human gut metagenome; human gut
3455
3528
+
Gly
TCC
[ENA]
¢þ
>WENV182822885
OKBP01000003
[OKBP] human gut metagenome; human gut
3456
3384
-
Gln
CTG
[ENA]
¢þ
>WENV182822934
OKBP01000227
[OKBP] human gut metagenome; human gut
4367
4442
+
Thr
CGT
[ENA]
¢þ
>WENV182822897
OKBP01000050
[OKBP] human gut metagenome; human gut
4781
4856
+
Ile2
CAT
[ENA]
¢þ
>WENV182822935
OKBP01000249
[OKBP] human gut metagenome; human gut
5263
5338
+
Pro
TGG
[ENA]
¢þ
>WENV182822928
OKBP01000174
[OKBP] human gut metagenome; human gut
5330
5257
-
Trp
CCA
[ENA]
¢þ
>WENV182822911
OKBP01000094
[OKBP] human gut metagenome; human gut
5351
5279
-
Val
GAC
[ENA]
¢þ
>WENV182822910
OKBP01000094
[OKBP] human gut metagenome; human gut
5425
5352
-
Gly
GCC
[ENA]
¢þ
>WENV182822923
OKBP01000159
[OKBP] human gut metagenome; human gut
5811
5737
-
Val
CAC
[ENA]
¢þ
>WENV182822917
OKBP01000137
[OKBP] human gut metagenome; human gut
5898
5974
+
Ile
GAT
[ENA]
¢þ
>WENV182822920
OKBP01000159
[OKBP] human gut metagenome; human gut
5962
6036
+
Gly
GCC
[ENA]
¢þ
>WENV182822921
OKBP01000159
[OKBP] human gut metagenome; human gut
6072
6143
+
Cys
GCA
[ENA]
¢þ
>WENV182822922
OKBP01000159
[OKBP] human gut metagenome; human gut
6144
6218
+
Val
GAC
[ENA]
¢þ
>WENV182822918
OKBP01000137
[OKBP] human gut metagenome; human gut
6162
6237
+
Ala
TGC
[ENA]
¢þ
>WENV182822909
OKBP01000093
[OKBP] human gut metagenome; human gut
6203
6115
-
Ser
CGA
[ENA]
¢þ
>WENV182822889
OKBP01000009
[OKBP] human gut metagenome; human gut
6980
7067
+
Ser
CGA
[ENA]
¢þ
>WENV182822915
OKBP01000134
[OKBP] human gut metagenome; human gut
8115
8028
-
Ser
GGA
[ENA]
¢þ
>WENV182822908
OKBP01000082
[OKBP] human gut metagenome; human gut
8271
8344
+
Ala
CGC
[ENA]
¢þ
>WENV182822904
OKBP01000066
[OKBP] human gut metagenome; human gut
9091
9008
-
Leu
TAG
[ENA]
¢þ
>WENV182822890
OKBP01000014
[OKBP] human gut metagenome; human gut
9433
9358
-
Arg
CCT
[ENA]
¢þ
>WENV182822912
OKBP01000110
[OKBP] human gut metagenome; human gut
9951
10024
+
Arg
CCT
[ENA]
¢þ
>WENV182822914
OKBP01000113
[OKBP] human gut metagenome; human gut
10236
10162
-
fMet
CAT
[ENA]
¢þ
>WENV182822913
OKBP01000111
[OKBP] human gut metagenome; human gut
10842
10769
-
Glu
TTC
[ENA]
¢þ
>WENV182822903
OKBP01000066
[OKBP] human gut metagenome; human gut
11636
11560
-
Lys
CTT
[ENA]
¢þ
>WENV182822902
OKBP01000066
[OKBP] human gut metagenome; human gut
11749
11673
-
Lys
CTT
[ENA]
¢þ
>WENV182822880
OKBP01000001
[OKBP] human gut metagenome; human gut
12146
12216
+
Gly
CCC
[ENA]
¢þ
>WENV182822907
OKBP01000080
[OKBP] human gut metagenome; human gut
12175
12100
-
His
GTG
[ENA]
¢þ
>WENV182822906
OKBP01000080
[OKBP] human gut metagenome; human gut
13059
13134
+
Arg
TCT
[ENA]
¢þ
>WENV182822895
OKBP01000026
[OKBP] human gut metagenome; human gut
15079
15004
-
Glu
CTC
[ENA]
¢þ
>WENV182822894
OKBP01000026
[OKBP] human gut metagenome; human gut
15187
15114
-
Glu
CTC
[ENA]
¢þ
>WENV182822893
OKBP01000026
[OKBP] human gut metagenome; human gut
15352
15280
-
Gln
CTG
[ENA]
¢þ
>WENV182822896
OKBP01000046
[OKBP] human gut metagenome; human gut
16779
16705
-
Pro
GGG
[ENA]
¢þ
>WENV182822884
OKBP01000002
[OKBP] human gut metagenome; human gut
19429
19503
+
Lys
CTT
[ENA]
¢þ
>WENV182822892
OKBP01000023
[OKBP] human gut metagenome; human gut
39332
39257
-
Asn
GTT
[ENA]
¢þ
>WENV182822891
OKBP01000023
[OKBP] human gut metagenome; human gut
39547
39619
+
Thr
GGT
[ENA]
¢þ
>WENV182822888
OKBP01000008
[OKBP] human gut metagenome; human gut
65251
65323
+
Thr
CGT
[ENA]
¢þ
>WENV182822883
OKBP01000001
[OKBP] human gut metagenome; human gut
68281
68208
-
Arg
CCG
[ENA]
¢þ
>WENV182822886
OKBP01000006
[OKBP] human gut metagenome; human gut
90503
90587
+
Leu
GAG
[ENA]
¢þ
>WENV182822881
OKBP01000001
[OKBP] human gut metagenome; human gut
96736
96816
+
Tyr
GTA
[ENA]
¢þ
>WENV182822882
OKBP01000001
[OKBP] human gut metagenome; human gut
96822
96895
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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