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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKBR] human gut metagenome; human gut
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182823064
OKBR01001810
[OKBR] human gut metagenome; human gut
79
154
+
fMet
CAT
[ENA]
¢þ
>WENV182823072
OKBR01002217
[OKBR] human gut metagenome; human gut
121
195
+
Arg
CCT
[ENA]
¢þ
>WENV182823052
OKBR01000479
[OKBR] human gut metagenome; human gut
143
67
-
Val
GAC
[ENA]
¢þ
>WENV182823063
OKBR01001604
[OKBR] human gut metagenome; human gut
161
88
-
Glu
TTC
[ENA]
¢þ
>WENV182823065
OKBR01001810
[OKBR] human gut metagenome; human gut
192
268
+
Asp
GTC
[ENA]
¢þ
>WENV182823062
OKBR01001545
[OKBR] human gut metagenome; human gut
213
124
-
Ser
CGA
[ENA]
¢þ
>WENV182823074
OKBR01002540
[OKBR] human gut metagenome; human gut
240
329
+
Ser
CGA
[ENA]
¢þ
>WENV182823057
OKBR01000862
[OKBR] human gut metagenome; human gut
242
166
-
Pro
CGG
[ENA]
¢þ
>WENV182823059
OKBR01000964
[OKBR] human gut metagenome; human gut
274
361
+
Ser
TGA
[ENA]
¢þ
>WENV182823066
OKBR01001810
[OKBR] human gut metagenome; human gut
314
386
+
Phe
GAA
[ENA]
¢þ
>WENV182823067
OKBR01001810
[OKBR] human gut metagenome; human gut
391
473
+
Tyr
GTA
[ENA]
¢þ
>WENV182823068
OKBR01001810
[OKBR] human gut metagenome; human gut
477
550
+
Trp
CCA
[ENA]
¢þ
>WENV182823045
OKBR01000399
[OKBR] human gut metagenome; human gut
567
480
-
Ser
GGA
[ENA]
¢þ
>WENV182823069
OKBR01001810
[OKBR] human gut metagenome; human gut
587
660
+
His
GTG
[ENA]
¢þ
>WENV182823073
OKBR01002375
[OKBR] human gut metagenome; human gut
604
529
-
Ala
GGC
[ENA]
¢þ
>WENV182823070
OKBR01001810
[OKBR] human gut metagenome; human gut
673
746
+
Gln
TTG
[ENA]
¢þ
>WENV182823053
OKBR01000515
[OKBR] human gut metagenome; human gut
697
622
-
Gly
GCC
[ENA]
¢þ
>WENV182823054
OKBR01000676
[OKBR] human gut metagenome; human gut
700
625
-
Thr
CGT
[ENA]
¢þ
>WENV182823034
OKBR01000061
[OKBR] human gut metagenome; human gut
707
632
-
Lys
TTT
[ENA]
¢þ
>WENV182823058
OKBR01000926
[OKBR] human gut metagenome; human gut
769
844
+
Asn
GTT
[ENA]
¢þ
>WENV182823071
OKBR01001810
[OKBR] human gut metagenome; human gut
771
841
+
Cys
GCA
[ENA]
¢þ
>WENV182823047
OKBR01000415
[OKBR] human gut metagenome; human gut
845
921
+
Ile
GAT
[ENA]
¢þ
>WENV182823048
OKBR01000415
[OKBR] human gut metagenome; human gut
964
1039
+
Ala
TGC
[ENA]
¢þ
>WENV182823033
OKBR01000061
[OKBR] human gut metagenome; human gut
980
907
-
Arg
ACG
[ENA]
¢þ
>WENV182823032
OKBR01000061
[OKBR] human gut metagenome; human gut
1080
995
-
Leu
TAA
[ENA]
¢þ
>WENV182823055
OKBR01000796
[OKBR] human gut metagenome; human gut
1098
1174
+
Asp
GTC
[ENA]
¢þ
>WENV182823031
OKBR01000061
[OKBR] human gut metagenome; human gut
1167
1096
-
Gly
GCC
[ENA]
¢þ
>WENV182823046
OKBR01000401
[OKBR] human gut metagenome; human gut
1171
1247
+
Arg
TCT
[ENA]
¢þ
>WENV182823056
OKBR01000796
[OKBR] human gut metagenome; human gut
1183
1258
+
Trp
CCA
[ENA]
¢þ
>WENV182823030
OKBR01000061
[OKBR] human gut metagenome; human gut
1247
1172
-
Thr
TGT
[ENA]
¢þ
>WENV182823061
OKBR01001324
[OKBR] human gut metagenome; human gut
1259
1184
-
Phe
GAA
[ENA]
¢þ
>WENV182823029
OKBR01000061
[OKBR] human gut metagenome; human gut
1336
1253
-
Leu
TAG
[ENA]
¢þ
>WENV182823028
OKBR01000061
[OKBR] human gut metagenome; human gut
1425
1351
-
Lys
TTT
[ENA]
¢þ
>WENV182823041
OKBR01000353
[OKBR] human gut metagenome; human gut
1453
1369
-
Leu
CAA
[ENA]
¢þ
>WENV182823060
OKBR01001099
[OKBR] human gut metagenome; human gut
1467
1393
-
Gln
CTG
[ENA]
¢þ
>WENV182823027
OKBR01000061
[OKBR] human gut metagenome; human gut
1504
1430
-
Val
TAC
[ENA]
¢þ
>WENV182823051
OKBR01000470
[OKBR] human gut metagenome; human gut
1710
1634
-
Arg
TCT
[ENA]
¢þ
>WENV182823050
OKBR01000470
[OKBR] human gut metagenome; human gut
1801
1725
-
Arg
TCG
[ENA]
¢þ
>WENV182823049
OKBR01000470
[OKBR] human gut metagenome; human gut
1884
1809
-
Ile2
CAT
[ENA]
¢þ
>WENV182823037
OKBR01000112
[OKBR] human gut metagenome; human gut
2006
1930
-
Pro
GGG
[ENA]
¢þ
>WENV182823044
OKBR01000394
[OKBR] human gut metagenome; human gut
2161
2075
-
Leu
TAA
[ENA]
¢þ
>WENV182823043
OKBR01000394
[OKBR] human gut metagenome; human gut
2247
2174
-
Cys
GCA
[ENA]
¢þ
>WENV182823042
OKBR01000394
[OKBR] human gut metagenome; human gut
2376
2301
-
Gly
GCC
[ENA]
¢þ
>WENV182823040
OKBR01000292
[OKBR] human gut metagenome; human gut
2788
2713
-
Thr
GGT
[ENA]
¢þ
>WENV182823039
OKBR01000292
[OKBR] human gut metagenome; human gut
2869
2795
-
Gly
TCC
[ENA]
¢þ
>WENV182823026
OKBR01000026
[OKBR] human gut metagenome; human gut
2871
2795
-
Pro
TGG
[ENA]
¢þ
>WENV182823025
OKBR01000026
[OKBR] human gut metagenome; human gut
3000
2914
-
Leu
CAG
[ENA]
¢þ
>WENV182823038
OKBR01000292
[OKBR] human gut metagenome; human gut
3070
2986
-
Tyr
GTA
[ENA]
¢þ
>WENV182823035
OKBR01000071
[OKBR] human gut metagenome; human gut
3368
3293
-
Ile2
CAT
[ENA]
¢þ
>WENV182823036
OKBR01000087
[OKBR] human gut metagenome; human gut
4825
4901
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK