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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKBZ] human gut metagenome; human gut
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182824061
OKBZ01002300
[OKBZ] human gut metagenome; human gut
3
78
+
Lys
CTT
[ENA]
¢þ
>WENV182824018
OKBZ01000032
[OKBZ] human gut metagenome; human gut
104
178
+
Gln
CTG
[ENA]
¢þ
>WENV182824062
OKBZ01002300
[OKBZ] human gut metagenome; human gut
123
197
+
Gln
TTG
[ENA]
¢þ
>WENV182824047
OKBZ01000320
[OKBZ] human gut metagenome; human gut
147
57
-
Ser
GGA
[ENA]
¢þ
>WENV182824060
OKBZ01001940
[OKBZ] human gut metagenome; human gut
194
118
-
Arg
ACG
[ENA]
¢þ
>WENV182824063
OKBZ01002300
[OKBZ] human gut metagenome; human gut
210
285
+
Lys
TTT
[ENA]
¢þ
>WENV182824046
OKBZ01000320
[OKBZ] human gut metagenome; human gut
264
189
-
Asn
GTT
[ENA]
¢þ
>WENV182824059
OKBZ01001940
[OKBZ] human gut metagenome; human gut
290
198
-
Ser
GCT
[ENA]
¢þ
>WENV182824064
OKBZ01002300
[OKBZ] human gut metagenome; human gut
291
375
+
Leu
TAG
[ENA]
¢þ
>WENV182824068
OKBZ01002594
[OKBZ] human gut metagenome; human gut
293
218
-
Ala
TGC
[ENA]
¢þ
>WENV182824057
OKBZ01001290
[OKBZ] human gut metagenome; human gut
320
395
+
Ile2
CAT
[ENA]
¢þ
>WENV182824065
OKBZ01002300
[OKBZ] human gut metagenome; human gut
382
456
+
Gly
GCC
[ENA]
¢þ
>WENV182824067
OKBZ01002594
[OKBZ] human gut metagenome; human gut
412
336
-
Ile
GAT
[ENA]
¢þ
>WENV182824066
OKBZ01002300
[OKBZ] human gut metagenome; human gut
478
551
+
Gly
TCC
[ENA]
¢þ
>WENV182824044
OKBZ01000214
[OKBZ] human gut metagenome; human gut
1185
1109
-
Asp
GTC
[ENA]
¢þ
>WENV182824037
OKBZ01000140
[OKBZ] human gut metagenome; human gut
1292
1366
+
Asn
GTT
[ENA]
¢þ
>WENV182824058
OKBZ01001315
[OKBZ] human gut metagenome; human gut
1355
1280
-
Thr
GGT
[ENA]
¢þ
>WENV182824038
OKBZ01000140
[OKBZ] human gut metagenome; human gut
1372
1448
+
Arg
TCT
[ENA]
¢þ
>WENV182824051
OKBZ01000506
[OKBZ] human gut metagenome; human gut
1461
1375
-
Leu
GAG
[ENA]
¢þ
>WENV182824055
OKBZ01000844
[OKBZ] human gut metagenome; human gut
1505
1416
-
Ser
CGA
[ENA]
¢þ
>WENV182824054
OKBZ01000831
[OKBZ] human gut metagenome; human gut
1534
1610
+
Arg
TCT
[ENA]
¢þ
>WENV182824053
OKBZ01000736
[OKBZ] human gut metagenome; human gut
1581
1656
+
Thr
CGT
[ENA]
¢þ
>WENV182824017
OKBZ01000030
[OKBZ] human gut metagenome; human gut
1681
1756
+
Ile2
CAT
[ENA]
¢þ
>WENV182824056
OKBZ01000916
[OKBZ] human gut metagenome; human gut
1793
1720
-
Arg
CCT
[ENA]
¢þ
>WENV182824011
OKBZ01000020
[OKBZ] human gut metagenome; human gut
2334
2260
-
Arg
CCT
[ENA]
¢þ
>WENV182824052
OKBZ01000725
[OKBZ] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182824048
OKBZ01000398
[OKBZ] human gut metagenome; human gut
2794
2870
+
Pro
GGG
[ENA]
¢þ
>WENV182824035
OKBZ01000094
[OKBZ] human gut metagenome; human gut
3222
3138
-
Leu
CAA
[ENA]
¢þ
>WENV182824050
OKBZ01000496
[OKBZ] human gut metagenome; human gut
3376
3300
-
Val
GAC
[ENA]
¢þ
>WENV182824049
OKBZ01000496
[OKBZ] human gut metagenome; human gut
3457
3381
-
Val
GAC
[ENA]
¢þ
>WENV182824045
OKBZ01000320
[OKBZ] human gut metagenome; human gut
3606
3531
-
Ala
TGC
[ENA]
¢þ
>WENV182824034
OKBZ01000086
[OKBZ] human gut metagenome; human gut
3720
3644
-
Pro
CGG
[ENA]
¢þ
>WENV182824025
OKBZ01000040
[OKBZ] human gut metagenome; human gut
4604
4528
-
fMet
CAT
[ENA]
¢þ
>WENV182824027
OKBZ01000048
[OKBZ] human gut metagenome; human gut
5489
5414
-
Thr
CGT
[ENA]
¢þ
>WENV182824040
OKBZ01000191
[OKBZ] human gut metagenome; human gut
7667
7743
+
Met
CAT
[ENA]
¢þ
>WENV182824041
OKBZ01000191
[OKBZ] human gut metagenome; human gut
7753
7837
+
Leu
TAG
[ENA]
¢þ
>WENV182824042
OKBZ01000191
[OKBZ] human gut metagenome; human gut
7861
7935
+
Gln
TTG
[ENA]
¢þ
>WENV182824043
OKBZ01000191
[OKBZ] human gut metagenome; human gut
7970
8044
+
Gln
TTG
[ENA]
¢þ
>WENV182824024
OKBZ01000040
[OKBZ] human gut metagenome; human gut
8471
8385
-
Leu
GAG
[ENA]
¢þ
>WENV182824039
OKBZ01000175
[OKBZ] human gut metagenome; human gut
8787
8862
+
Lys
TTT
[ENA]
¢þ
>WENV182824030
OKBZ01000067
[OKBZ] human gut metagenome; human gut
9118
9024
-
SeC
TCA
[ENA]
¢þ
>WENV182824036
OKBZ01000124
[OKBZ] human gut metagenome; human gut
11747
11660
-
Ser
TGA
[ENA]
¢þ
>WENV182824033
OKBZ01000078
[OKBZ] human gut metagenome; human gut
12784
12700
-
Tyr
GTA
[ENA]
¢þ
>WENV182824012
OKBZ01000023
[OKBZ] human gut metagenome; human gut
17299
17375
+
Arg
CCG
[ENA]
¢þ
>WENV182824013
OKBZ01000023
[OKBZ] human gut metagenome; human gut
17434
17509
+
His
GTG
[ENA]
¢þ
>WENV182824014
OKBZ01000023
[OKBZ] human gut metagenome; human gut
17530
17616
+
Leu
CAG
[ENA]
¢þ
>WENV182824015
OKBZ01000023
[OKBZ] human gut metagenome; human gut
17659
17735
+
Pro
TGG
[ENA]
¢þ
>WENV182824031
OKBZ01000068
[OKBZ] human gut metagenome; human gut
21955
21869
-
Leu
CAG
[ENA]
¢þ
>WENV182824029
OKBZ01000066
[OKBZ] human gut metagenome; human gut
22632
22556
-
Asp
GTC
[ENA]
¢þ
>WENV182824032
OKBZ01000076
[OKBZ] human gut metagenome; human gut
22652
22577
-
Trp
CCA
[ENA]
¢þ
>WENV182824028
OKBZ01000059
[OKBZ] human gut metagenome; human gut
23098
23173
+
Phe
GAA
[ENA]
¢þ
>WENV182824023
OKBZ01000038
[OKBZ] human gut metagenome; human gut
29213
29288
+
Phe
GAA
[ENA]
¢þ
>WENV182824010
OKBZ01000012
[OKBZ] human gut metagenome; human gut
33952
34025
+
Gly
CCC
[ENA]
¢þ
>WENV182824026
OKBZ01000043
[OKBZ] human gut metagenome; human gut
38478
38554
+
fMet
CAT
[ENA]
¢þ
>WENV182824019
OKBZ01000036
[OKBZ] human gut metagenome; human gut
45823
45898
+
Ile2
CAT
[ENA]
¢þ
>WENV182824020
OKBZ01000036
[OKBZ] human gut metagenome; human gut
45979
46054
+
Thr
TGT
[ENA]
¢þ
>WENV182824021
OKBZ01000036
[OKBZ] human gut metagenome; human gut
46063
46147
+
Tyr
GTA
[ENA]
¢þ
>WENV182824022
OKBZ01000036
[OKBZ] human gut metagenome; human gut
46264
46338
+
Gly
TCC
[ENA]
¢þ
>WENV182824009
OKBZ01000007
[OKBZ] human gut metagenome; human gut
52056
51969
-
Ser
GGA
[ENA]
¢þ
>WENV182824006
OKBZ01000006
[OKBZ] human gut metagenome; human gut
52267
52342
+
Gly
GCC
[ENA]
¢þ
>WENV182824007
OKBZ01000006
[OKBZ] human gut metagenome; human gut
52396
52469
+
Cys
GCA
[ENA]
¢þ
>WENV182824008
OKBZ01000006
[OKBZ] human gut metagenome; human gut
52482
52568
+
Leu
TAA
[ENA]
¢þ
>WENV182824016
OKBZ01000024
[OKBZ] human gut metagenome; human gut
54131
54055
-
Arg
TCT
[ENA]
¢þ
>WENV182824005
OKBZ01000004
[OKBZ] human gut metagenome; human gut
66774
66699
-
Asn
GTT
[ENA]
¢þ
>WENV182824004
OKBZ01000004
[OKBZ] human gut metagenome; human gut
69183
69108
-
Asn
GTT
[ENA]
¢þ
>WENV182824001
OKBZ01000004
[OKBZ] human gut metagenome; human gut
70932
71007
+
Asn
GTT
[ENA]
¢þ
>WENV182824000
OKBZ01000003
[OKBZ] human gut metagenome; human gut
88640
88564
-
Val
GAC
[ENA]
¢þ
>WENV182823999
OKBZ01000003
[OKBZ] human gut metagenome; human gut
88721
88645
-
Val
GAC
[ENA]
¢þ
>WENV182824003
OKBZ01000004
[OKBZ] human gut metagenome; human gut
110898
110823
-
Asn
GTT
[ENA]
¢þ
>WENV182824002
OKBZ01000004
[OKBZ] human gut metagenome; human gut
111890
111979
+
Ser
CGA
[ENA]
¢þ
>WENV182823998
OKBZ01000001
[OKBZ] human gut metagenome; human gut
117324
117400
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK