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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKCC] human gut metagenome; human gut
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182824204
OKCC01000169
[OKCC] human gut metagenome; human gut
12
88
+
Pro
TGG
[ENA]
¢þ
>WENV182824215
OKCC01000563
[OKCC] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182824234
OKCC01001798
[OKCC] human gut metagenome; human gut
113
38
-
Lys
TTT
[ENA]
¢þ
>WENV182824214
OKCC01000509
[OKCC] human gut metagenome; human gut
218
143
-
Phe
GAA
[ENA]
¢þ
>WENV182824239
OKCC01002514
[OKCC] human gut metagenome; human gut
242
167
-
Ala
TGC
[ENA]
¢þ
>WENV182824233
OKCC01001515
[OKCC] human gut metagenome; human gut
272
197
-
Lys
TTT
[ENA]
¢þ
>WENV182824235
OKCC01002017
[OKCC] human gut metagenome; human gut
283
207
-
Pro
CGG
[ENA]
¢þ
>WENV182824236
OKCC01002310
[OKCC] human gut metagenome; human gut
314
239
-
Thr
CGT
[ENA]
¢þ
>WENV182824209
OKCC01000391
[OKCC] human gut metagenome; human gut
346
274
-
Arg
CCT
[ENA]
¢þ
>WENV182824223
OKCC01000767
[OKCC] human gut metagenome; human gut
350
426
+
Met
CAT
[ENA]
¢þ
>WENV182824232
OKCC01001515
[OKCC] human gut metagenome; human gut
351
276
-
Val
TAC
[ENA]
¢þ
>WENV182824238
OKCC01002514
[OKCC] human gut metagenome; human gut
427
351
-
Ile
GAT
[ENA]
¢þ
>WENV182824224
OKCC01000767
[OKCC] human gut metagenome; human gut
435
519
+
Leu
TAG
[ENA]
¢þ
>WENV182824237
OKCC01002437
[OKCC] human gut metagenome; human gut
468
392
-
Val
GAC
[ENA]
¢þ
>WENV182824206
OKCC01000250
[OKCC] human gut metagenome; human gut
477
391
-
Leu
CAG
[ENA]
¢þ
>WENV182824225
OKCC01000767
[OKCC] human gut metagenome; human gut
555
629
+
Gln
TTG
[ENA]
¢þ
>WENV182824210
OKCC01000450
[OKCC] human gut metagenome; human gut
591
515
-
Pro
GGG
[ENA]
¢þ
>WENV182824220
OKCC01000601
[OKCC] human gut metagenome; human gut
603
528
-
Thr
GGT
[ENA]
¢þ
>WENV182824226
OKCC01000767
[OKCC] human gut metagenome; human gut
651
727
+
Met
CAT
[ENA]
¢þ
>WENV182824219
OKCC01000601
[OKCC] human gut metagenome; human gut
683
609
-
Gly
TCC
[ENA]
¢þ
>WENV182824227
OKCC01000767
[OKCC] human gut metagenome; human gut
773
847
+
Gln
CTG
[ENA]
¢þ
>WENV182824218
OKCC01000601
[OKCC] human gut metagenome; human gut
887
803
-
Tyr
GTA
[ENA]
¢þ
>WENV182824228
OKCC01000834
[OKCC] human gut metagenome; human gut
912
998
+
Leu
GAG
[ENA]
¢þ
>WENV182824217
OKCC01000601
[OKCC] human gut metagenome; human gut
973
898
-
Thr
TGT
[ENA]
¢þ
>WENV182824231
OKCC01001449
[OKCC] human gut metagenome; human gut
991
1066
+
Asn
GTT
[ENA]
¢þ
>WENV182824230
OKCC01001109
[OKCC] human gut metagenome; human gut
1071
1146
+
Ala
GGC
[ENA]
¢þ
>WENV182824229
OKCC01000981
[OKCC] human gut metagenome; human gut
1935
2008
+
Gly
CCC
[ENA]
¢þ
>WENV182824216
OKCC01000590
[OKCC] human gut metagenome; human gut
2239
2315
+
fMet
CAT
[ENA]
¢þ
>WENV182824208
OKCC01000322
[OKCC] human gut metagenome; human gut
2264
2340
+
fMet
CAT
[ENA]
¢þ
>WENV182824221
OKCC01000628
[OKCC] human gut metagenome; human gut
2442
2529
+
Ser
TGA
[ENA]
¢þ
>WENV182824222
OKCC01000684
[OKCC] human gut metagenome; human gut
2557
2633
+
Arg
CCG
[ENA]
¢þ
>WENV182824212
OKCC01000488
[OKCC] human gut metagenome; human gut
2876
2968
+
Ser
GCT
[ENA]
¢þ
>WENV182824207
OKCC01000318
[OKCC] human gut metagenome; human gut
2902
2989
+
Ser
GGA
[ENA]
¢þ
>WENV182824213
OKCC01000488
[OKCC] human gut metagenome; human gut
2973
3049
+
Arg
ACG
[ENA]
¢þ
>WENV182824201
OKCC01000114
[OKCC] human gut metagenome; human gut
3120
3195
+
Gly
GCC
[ENA]
¢þ
>WENV182824202
OKCC01000114
[OKCC] human gut metagenome; human gut
3234
3307
+
Cys
GCA
[ENA]
¢þ
>WENV182824203
OKCC01000114
[OKCC] human gut metagenome; human gut
3321
3407
+
Leu
TAA
[ENA]
¢þ
>WENV182824211
OKCC01000466
[OKCC] human gut metagenome; human gut
3329
3254
-
Ile2
CAT
[ENA]
¢þ
>WENV182824205
OKCC01000227
[OKCC] human gut metagenome; human gut
5246
5322
+
Arg
TCT
[ENA]
¢þ
>WENV182824200
OKCC01000030
[OKCC] human gut metagenome; human gut
10489
10573
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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