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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKCE] human gut metagenome; human gut
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182824607
OKCE01000679
[OKCE] human gut metagenome; human gut
68
144
+
Arg
TCT
[ENA]
¢þ
>WENV182824611
OKCE01000687
[OKCE] human gut metagenome; human gut
84
160
+
Ile
GAT
[ENA]
¢þ
>WENV182824606
OKCE01000629
[OKCE] human gut metagenome; human gut
100
28
-
Gly
TCC
[ENA]
¢þ
>WENV182824547
OKCE01000007
[OKCE] human gut metagenome; human gut
101
177
+
Pro
TGG
[ENA]
¢þ
>WENV182824595
OKCE01000557
[OKCE] human gut metagenome; human gut
128
53
-
fMet
CAT
[ENA]
¢þ
>WENV182824608
OKCE01000679
[OKCE] human gut metagenome; human gut
149
224
+
His
GTG
[ENA]
¢þ
>WENV182824582
OKCE01000390
[OKCE] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182824573
OKCE01000174
[OKCE] human gut metagenome; human gut
172
96
-
Met
CAT
[ENA]
¢þ
>WENV182824605
OKCE01000629
[OKCE] human gut metagenome; human gut
191
119
-
Phe
GAA
[ENA]
¢þ
>WENV182824594
OKCE01000557
[OKCE] human gut metagenome; human gut
223
136
-
Leu
TAA
[ENA]
¢þ
>WENV182824609
OKCE01000679
[OKCE] human gut metagenome; human gut
230
304
+
Gln
TTG
[ENA]
¢þ
>WENV182824604
OKCE01000629
[OKCE] human gut metagenome; human gut
268
193
-
fMet
CAT
[ENA]
¢þ
>WENV182824572
OKCE01000174
[OKCE] human gut metagenome; human gut
268
194
-
Gln
TTG
[ENA]
¢þ
>WENV182824612
OKCE01000687
[OKCE] human gut metagenome; human gut
270
345
+
Ala
TGC
[ENA]
¢þ
>WENV182824593
OKCE01000557
[OKCE] human gut metagenome; human gut
303
232
-
Gly
GCC
[ENA]
¢þ
>WENV182824603
OKCE01000629
[OKCE] human gut metagenome; human gut
367
278
-
Ser
TGA
[ENA]
¢þ
>WENV182824610
OKCE01000679
[OKCE] human gut metagenome; human gut
370
443
+
Gly
TCC
[ENA]
¢þ
>WENV182824613
OKCE01000715
[OKCE] human gut metagenome; human gut
372
447
+
Thr
TGT
[ENA]
¢þ
>WENV182824571
OKCE01000174
[OKCE] human gut metagenome; human gut
390
306
-
Leu
TAG
[ENA]
¢þ
>WENV182824592
OKCE01000557
[OKCE] human gut metagenome; human gut
410
336
-
Thr
TGT
[ENA]
¢þ
>WENV182824602
OKCE01000629
[OKCE] human gut metagenome; human gut
453
380
-
Glu
TTC
[ENA]
¢þ
>WENV182824570
OKCE01000174
[OKCE] human gut metagenome; human gut
475
399
-
Met
CAT
[ENA]
¢þ
>WENV182824596
OKCE01000608
[OKCE] human gut metagenome; human gut
486
560
+
Glu
TTC
[ENA]
¢þ
>WENV182824591
OKCE01000557
[OKCE] human gut metagenome; human gut
502
419
-
Leu
TAG
[ENA]
¢þ
>WENV182824580
OKCE01000314
[OKCE] human gut metagenome; human gut
515
440
-
Asn
GTT
[ENA]
¢þ
>WENV182824597
OKCE01000608
[OKCE] human gut metagenome; human gut
567
642
+
Val
TAC
[ENA]
¢þ
>WENV182824590
OKCE01000557
[OKCE] human gut metagenome; human gut
583
511
-
Lys
TTT
[ENA]
¢þ
>WENV182824601
OKCE01000629
[OKCE] human gut metagenome; human gut
617
542
-
Ala
TGC
[ENA]
¢þ
>WENV182824598
OKCE01000608
[OKCE] human gut metagenome; human gut
657
733
+
Asp
GTC
[ENA]
¢þ
>WENV182824589
OKCE01000557
[OKCE] human gut metagenome; human gut
658
586
-
Asp
GTC
[ENA]
¢þ
>WENV182824588
OKCE01000557
[OKCE] human gut metagenome; human gut
733
661
-
Val
TAC
[ENA]
¢þ
>WENV182824599
OKCE01000608
[OKCE] human gut metagenome; human gut
737
812
+
Thr
TGT
[ENA]
¢þ
>WENV182824600
OKCE01000608
[OKCE] human gut metagenome; human gut
818
903
+
Tyr
GTA
[ENA]
¢þ
>WENV182824584
OKCE01000410
[OKCE] human gut metagenome; human gut
1451
1362
-
Ser
CGA
[ENA]
¢þ
>WENV182824567
OKCE01000094
[OKCE] human gut metagenome; human gut
1834
1758
-
Arg
TCT
[ENA]
¢þ
>WENV182824586
OKCE01000473
[OKCE] human gut metagenome; human gut
1951
1867
-
Leu
CAA
[ENA]
¢þ
>WENV182824587
OKCE01000476
[OKCE] human gut metagenome; human gut
1964
2038
+
Ala
TGC
[ENA]
¢þ
>WENV182824577
OKCE01000272
[OKCE] human gut metagenome; human gut
2245
2158
-
Ser
GGA
[ENA]
¢þ
>WENV182824583
OKCE01000410
[OKCE] human gut metagenome; human gut
2443
2518
+
Asn
GTT
[ENA]
¢þ
>WENV182824585
OKCE01000414
[OKCE] human gut metagenome; human gut
2523
2596
+
Arg
CCT
[ENA]
¢þ
>WENV182824581
OKCE01000333
[OKCE] human gut metagenome; human gut
2764
2839
+
Ala
GGC
[ENA]
¢þ
>WENV182824566
OKCE01000093
[OKCE] human gut metagenome; human gut
4095
4022
-
Cys
GCA
[ENA]
¢þ
>WENV182824579
OKCE01000295
[OKCE] human gut metagenome; human gut
4114
4027
-
Ser
TGA
[ENA]
¢þ
>WENV182824565
OKCE01000093
[OKCE] human gut metagenome; human gut
4209
4134
-
Gly
GCC
[ENA]
¢þ
>WENV182824578
OKCE01000276
[OKCE] human gut metagenome; human gut
5447
5523
+
Val
GAC
[ENA]
¢þ
>WENV182824549
OKCE01000013
[OKCE] human gut metagenome; human gut
5564
5658
+
SeC
TCA
[ENA]
¢þ
>WENV182824569
OKCE01000146
[OKCE] human gut metagenome; human gut
5664
5737
+
Gly
CCC
[ENA]
¢þ
>WENV182824564
OKCE01000091
[OKCE] human gut metagenome; human gut
6929
6853
-
fMet
CAT
[ENA]
¢þ
>WENV182824550
OKCE01000024
[OKCE] human gut metagenome; human gut
7457
7533
+
Asp
GTC
[ENA]
¢þ
>WENV182824561
OKCE01000075
[OKCE] human gut metagenome; human gut
8682
8768
+
Leu
CAG
[ENA]
¢þ
>WENV182824563
OKCE01000091
[OKCE] human gut metagenome; human gut
8821
8735
-
Leu
GAG
[ENA]
¢þ
>WENV182824576
OKCE01000196
[OKCE] human gut metagenome; human gut
9285
9361
+
Pro
GGG
[ENA]
¢þ
>WENV182824574
OKCE01000193
[OKCE] human gut metagenome; human gut
9532
9607
+
Lys
TTT
[ENA]
¢þ
>WENV182824575
OKCE01000193
[OKCE] human gut metagenome; human gut
9735
9810
+
Val
TAC
[ENA]
¢þ
>WENV182824568
OKCE01000126
[OKCE] human gut metagenome; human gut
14125
14051
-
Gln
CTG
[ENA]
¢þ
>WENV182824562
OKCE01000087
[OKCE] human gut metagenome; human gut
16310
16235
-
Ile2
CAT
[ENA]
¢þ
>WENV182824560
OKCE01000074
[OKCE] human gut metagenome; human gut
17505
17429
-
fMet
CAT
[ENA]
¢þ
>WENV182824555
OKCE01000069
[OKCE] human gut metagenome; human gut
18574
18649
+
Thr
CGT
[ENA]
¢þ
>WENV182824559
OKCE01000073
[OKCE] human gut metagenome; human gut
19750
19826
+
Pro
CGG
[ENA]
¢þ
>WENV182824556
OKCE01000071
[OKCE] human gut metagenome; human gut
20409
20485
+
Arg
CCG
[ENA]
¢þ
>WENV182824557
OKCE01000071
[OKCE] human gut metagenome; human gut
20541
20616
+
His
GTG
[ENA]
¢þ
>WENV182824558
OKCE01000071
[OKCE] human gut metagenome; human gut
20639
20725
+
Leu
CAG
[ENA]
¢þ
>WENV182824554
OKCE01000063
[OKCE] human gut metagenome; human gut
21555
21479
-
Arg
ACG
[ENA]
¢þ
>WENV182824553
OKCE01000054
[OKCE] human gut metagenome; human gut
23148
23073
-
Lys
TTT
[ENA]
¢þ
>WENV182824552
OKCE01000044
[OKCE] human gut metagenome; human gut
24968
24893
-
Trp
CCA
[ENA]
¢þ
>WENV182824551
OKCE01000044
[OKCE] human gut metagenome; human gut
25099
25023
-
Asp
GTC
[ENA]
¢þ
>WENV182824548
OKCE01000010
[OKCE] human gut metagenome; human gut
41259
41184
-
Phe
GAA
[ENA]
¢þ
>WENV182824546
OKCE01000001
[OKCE] human gut metagenome; human gut
62289
62214
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK