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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKCT] human gut metagenome; human gut
HIT:
112 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182826574
OKCT01000021
[OKCT] human gut metagenome; human gut
64
139
+
Trp
CCA
[ENA]
¢þ
>WENV182826567
OKCT01000014
[OKCT] human gut metagenome; human gut
65
149
+
Leu
TAG
[ENA]
¢þ
>WENV182826651
OKCT01001972
[OKCT] human gut metagenome; human gut
79
151
+
Val
GAC
[ENA]
¢þ
>WENV182826647
OKCT01001716
[OKCT] human gut metagenome; human gut
79
152
+
Arg
CCT
[ENA]
¢þ
>WENV182826656
OKCT01002592
[OKCT] human gut metagenome; human gut
109
34
-
Arg
TCT
[ENA]
¢þ
>WENV182826654
OKCT01002498
[OKCT] human gut metagenome; human gut
111
187
+
Ile
GAT
[ENA]
¢þ
>WENV182826635
OKCT01000688
[OKCT] human gut metagenome; human gut
125
52
-
Asn
GTT
[ENA]
¢þ
>WENV182826611
OKCT01000081
[OKCT] human gut metagenome; human gut
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV182826568
OKCT01000014
[OKCT] human gut metagenome; human gut
173
247
+
Gln
TTG
[ENA]
¢þ
>WENV182826652
OKCT01001972
[OKCT] human gut metagenome; human gut
199
272
+
Val
CAC
[ENA]
¢þ
>WENV182826641
OKCT01001162
[OKCT] human gut metagenome; human gut
220
293
+
Ile2
CAT
[ENA]
¢þ
>WENV182826655
OKCT01002498
[OKCT] human gut metagenome; human gut
225
301
+
Ile2
CAT
[ENA]
¢þ
>WENV182826636
OKCT01000727
[OKCT] human gut metagenome; human gut
231
158
-
Thr
CGT
[ENA]
¢þ
>WENV182826569
OKCT01000014
[OKCT] human gut metagenome; human gut
263
339
+
Met
CAT
[ENA]
¢þ
>WENV182826600
OKCT01000024
[OKCT] human gut metagenome; human gut
266
191
-
Lys
TTT
[ENA]
¢þ
>WENV182826653
OKCT01001972
[OKCT] human gut metagenome; human gut
303
378
+
Gly
GCC
[ENA]
¢þ
>WENV182826657
OKCT01002861
[OKCT] human gut metagenome; human gut
311
384
+
Gly
CCC
[ENA]
¢þ
>WENV182826650
OKCT01001884
[OKCT] human gut metagenome; human gut
334
261
-
Lys
TTT
[ENA]
¢þ
>WENV182826649
OKCT01001792
[OKCT] human gut metagenome; human gut
359
450
+
Ser
CGA
[ENA]
¢þ
>WENV182826615
OKCT01000098
[OKCT] human gut metagenome; human gut
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182826570
OKCT01000014
[OKCT] human gut metagenome; human gut
388
462
+
Gln
CTG
[ENA]
¢þ
>WENV182826631
OKCT01000247
[OKCT] human gut metagenome; human gut
391
317
-
Leu
CAA
[ENA]
¢þ
>WENV182826648
OKCT01001747
[OKCT] human gut metagenome; human gut
391
478
+
Ser
GGA
[ENA]
¢þ
>WENV182826633
OKCT01000580
[OKCT] human gut metagenome; human gut
408
496
+
Leu
GAG
[ENA]
¢þ
>WENV182826629
OKCT01000234
[OKCT] human gut metagenome; human gut
455
367
-
Leu
TAA
[ENA]
¢þ
>WENV182826614
OKCT01000098
[OKCT] human gut metagenome; human gut
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182826643
OKCT01001169
[OKCT] human gut metagenome; human gut
481
408
-
Ala
TGC
[ENA]
¢þ
>WENV182826640
OKCT01001158
[OKCT] human gut metagenome; human gut
492
419
-
Gly
TCC
[ENA]
¢þ
>WENV182826645
OKCT01001658
[OKCT] human gut metagenome; human gut
513
586
+
Glu
CTC
[ENA]
¢þ
>WENV182826638
OKCT01000761
[OKCT] human gut metagenome; human gut
545
460
-
Leu
CAG
[ENA]
¢þ
>WENV182826628
OKCT01000234
[OKCT] human gut metagenome; human gut
585
511
-
Asn
GTT
[ENA]
¢þ
>WENV182826642
OKCT01001169
[OKCT] human gut metagenome; human gut
598
524
-
Ile
GAT
[ENA]
¢þ
>WENV182826637
OKCT01000750
[OKCT] human gut metagenome; human gut
600
526
-
Arg
TCT
[ENA]
¢þ
>WENV182826646
OKCT01001658
[OKCT] human gut metagenome; human gut
625
699
+
Gln
CTG
[ENA]
¢þ
>WENV182826613
OKCT01000098
[OKCT] human gut metagenome; human gut
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182826612
OKCT01000098
[OKCT] human gut metagenome; human gut
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182826644
OKCT01001421
[OKCT] human gut metagenome; human gut
804
880
+
Arg
CCT
[ENA]
¢þ
>WENV182826618
OKCT01000227
[OKCT] human gut metagenome; human gut
816
744
-
Glu
TTC
[ENA]
¢þ
>WENV182826639
OKCT01000837
[OKCT] human gut metagenome; human gut
960
884
-
fMet
CAT
[ENA]
¢þ
>WENV182826634
OKCT01000623
[OKCT] human gut metagenome; human gut
1192
1104
-
Ser
TGA
[ENA]
¢þ
>WENV182826619
OKCT01000229
[OKCT] human gut metagenome; human gut
1201
1275
+
Val
TAC
[ENA]
¢þ
>WENV182826620
OKCT01000229
[OKCT] human gut metagenome; human gut
1285
1360
+
Asp
GTC
[ENA]
¢þ
>WENV182826616
OKCT01000129
[OKCT] human gut metagenome; human gut
1336
1410
+
Thr
TGT
[ENA]
¢þ
>WENV182826621
OKCT01000229
[OKCT] human gut metagenome; human gut
1406
1478
+
Phe
GAA
[ENA]
¢þ
>WENV182826622
OKCT01000229
[OKCT] human gut metagenome; human gut
1483
1565
+
Tyr
GTA
[ENA]
¢þ
>WENV182826610
OKCT01000060
[OKCT] human gut metagenome; human gut
1565
1489
-
Arg
TCT
[ENA]
¢þ
>WENV182826623
OKCT01000229
[OKCT] human gut metagenome; human gut
1569
1642
+
Trp
CCA
[ENA]
¢þ
>WENV182826632
OKCT01000344
[OKCT] human gut metagenome; human gut
1605
1690
+
Ser
CGA
[ENA]
¢þ
>WENV182826624
OKCT01000229
[OKCT] human gut metagenome; human gut
1679
1752
+
His
GTG
[ENA]
¢þ
>WENV182826625
OKCT01000229
[OKCT] human gut metagenome; human gut
1765
1838
+
Gln
TTG
[ENA]
¢þ
>WENV182826630
OKCT01000243
[OKCT] human gut metagenome; human gut
1812
1886
+
Ile2
CAT
[ENA]
¢þ
>WENV182826626
OKCT01000229
[OKCT] human gut metagenome; human gut
1863
1933
+
Cys
GCA
[ENA]
¢þ
>WENV182826627
OKCT01000229
[OKCT] human gut metagenome; human gut
2048
2123
+
Gly
GCC
[ENA]
¢þ
>WENV182826617
OKCT01000227
[OKCT] human gut metagenome; human gut
2067
2141
+
Asp
GTC
[ENA]
¢þ
>WENV182826609
OKCT01000055
[OKCT] human gut metagenome; human gut
2888
2982
+
SeC
TCA
[ENA]
¢þ
>WENV182826572
OKCT01000016
[OKCT] human gut metagenome; human gut
4849
4933
+
Tyr
GTA
[ENA]
¢þ
>WENV182826608
OKCT01000042
[OKCT] human gut metagenome; human gut
8201
8277
+
Asp
GTC
[ENA]
¢þ
>WENV182826605
OKCT01000031
[OKCT] human gut metagenome; human gut
27148
27073
-
Ile2
CAT
[ENA]
¢þ
>WENV182826571
OKCT01000015
[OKCT] human gut metagenome; human gut
28919
28994
+
Phe
GAA
[ENA]
¢þ
>WENV182826606
OKCT01000035
[OKCT] human gut metagenome; human gut
31204
31279
+
Thr
CGT
[ENA]
¢þ
>WENV182826575
OKCT01000021
[OKCT] human gut metagenome; human gut
34608
34684
+
Arg
CCG
[ENA]
¢þ
>WENV182826576
OKCT01000021
[OKCT] human gut metagenome; human gut
34743
34818
+
His
GTG
[ENA]
¢þ
>WENV182826577
OKCT01000021
[OKCT] human gut metagenome; human gut
34839
34925
+
Leu
CAG
[ENA]
¢þ
>WENV182826578
OKCT01000021
[OKCT] human gut metagenome; human gut
34968
35044
+
Pro
TGG
[ENA]
¢þ
>WENV182826607
OKCT01000036
[OKCT] human gut metagenome; human gut
36249
36324
+
Phe
GAA
[ENA]
¢þ
>WENV182826565
OKCT01000011
[OKCT] human gut metagenome; human gut
56413
56500
+
Ser
GGA
[ENA]
¢þ
>WENV182826604
OKCT01000031
[OKCT] human gut metagenome; human gut
61383
61307
-
Arg
ACG
[ENA]
¢þ
>WENV182826603
OKCT01000031
[OKCT] human gut metagenome; human gut
61658
61582
-
Arg
ACG
[ENA]
¢þ
>WENV182826602
OKCT01000029
[OKCT] human gut metagenome; human gut
63486
63562
+
Pro
CGG
[ENA]
¢þ
>WENV182826548
OKCT01000002
[OKCT] human gut metagenome; human gut
65715
65802
+
Ser
GGA
[ENA]
¢þ
>WENV182826601
OKCT01000028
[OKCT] human gut metagenome; human gut
69581
69665
+
Leu
CAA
[ENA]
¢þ
>WENV182826598
OKCT01000022
[OKCT] human gut metagenome; human gut
71055
70980
-
Cys
GCA
[ENA]
¢þ
>WENV182826597
OKCT01000022
[OKCT] human gut metagenome; human gut
71152
71060
-
Ser
GCT
[ENA]
¢þ
>WENV182826596
OKCT01000022
[OKCT] human gut metagenome; human gut
72063
71988
-
His
GTG
[ENA]
¢þ
>WENV182826595
OKCT01000022
[OKCT] human gut metagenome; human gut
72170
72095
-
Gln
CTG
[ENA]
¢þ
>WENV182826594
OKCT01000022
[OKCT] human gut metagenome; human gut
72254
72176
-
Leu
TAA
[ENA]
¢þ
>WENV182826593
OKCT01000022
[OKCT] human gut metagenome; human gut
72332
72257
-
Gln
TTG
[ENA]
¢þ
>WENV182826592
OKCT01000022
[OKCT] human gut metagenome; human gut
73230
73155
-
Arg
ACG
[ENA]
¢þ
>WENV182826591
OKCT01000022
[OKCT] human gut metagenome; human gut
73314
73237
-
Leu
CAA
[ENA]
¢þ
>WENV182826590
OKCT01000022
[OKCT] human gut metagenome; human gut
73390
73316
-
Val
TAC
[ENA]
¢þ
>WENV182826589
OKCT01000022
[OKCT] human gut metagenome; human gut
73562
73487
-
Thr
TGT
[ENA]
¢þ
>WENV182826588
OKCT01000022
[OKCT] human gut metagenome; human gut
73644
73570
-
Gly
TCC
[ENA]
¢þ
>WENV182826587
OKCT01000022
[OKCT] human gut metagenome; human gut
73726
73651
-
Ala
TGC
[ENA]
¢þ
>WENV182826586
OKCT01000022
[OKCT] human gut metagenome; human gut
74239
74150
-
Ser
TGA
[ENA]
¢þ
>WENV182826585
OKCT01000022
[OKCT] human gut metagenome; human gut
74555
74479
-
Arg
TCT
[ENA]
¢þ
>WENV182826584
OKCT01000022
[OKCT] human gut metagenome; human gut
74906
74831
-
Ile
GAT
[ENA]
¢þ
>WENV182826583
OKCT01000022
[OKCT] human gut metagenome; human gut
74984
74908
-
Met
CAT
[ENA]
¢þ
>WENV182826582
OKCT01000022
[OKCT] human gut metagenome; human gut
75642
75566
-
Asp
GTC
[ENA]
¢þ
>WENV182826581
OKCT01000022
[OKCT] human gut metagenome; human gut
75820
75744
-
Asn
GTT
[ENA]
¢þ
>WENV182826580
OKCT01000022
[OKCT] human gut metagenome; human gut
76149
76072
-
Glu
TTC
[ENA]
¢þ
>WENV182826579
OKCT01000022
[OKCT] human gut metagenome; human gut
76233
76157
-
Pro
TGG
[ENA]
¢þ
>WENV182826599
OKCT01000024
[OKCT] human gut metagenome; human gut
79021
79097
+
Met
CAT
[ENA]
¢þ
>WENV182826549
OKCT01000003
[OKCT] human gut metagenome; human gut
84206
84292
+
Leu
GAG
[ENA]
¢þ
>WENV182826573
OKCT01000018
[OKCT] human gut metagenome; human gut
86600
86514
-
Leu
CAG
[ENA]
¢þ
>WENV182826550
OKCT01000003
[OKCT] human gut metagenome; human gut
88075
88151
+
fMet
CAT
[ENA]
¢þ
>WENV182826563
OKCT01000010
[OKCT] human gut metagenome; human gut
100156
100230
+
Arg
CCT
[ENA]
¢þ
>WENV182826566
OKCT01000011
[OKCT] human gut metagenome; human gut
105072
105159
+
Ser
TGA
[ENA]
¢þ
>WENV182826546
OKCT01000001
[OKCT] human gut metagenome; human gut
113233
113309
+
fMet
CAT
[ENA]
¢þ
>WENV182826559
OKCT01000004
[OKCT] human gut metagenome; human gut
118935
118849
-
Leu
TAA
[ENA]
¢þ
>WENV182826558
OKCT01000004
[OKCT] human gut metagenome; human gut
119021
118948
-
Cys
GCA
[ENA]
¢þ
>WENV182826557
OKCT01000004
[OKCT] human gut metagenome; human gut
119151
119076
-
Gly
GCC
[ENA]
¢þ
>WENV182826562
OKCT01000007
[OKCT] human gut metagenome; human gut
121005
121081
+
Pro
GGG
[ENA]
¢þ
>WENV182826561
OKCT01000006
[OKCT] human gut metagenome; human gut
125247
125171
-
Val
GAC
[ENA]
¢þ
>WENV182826560
OKCT01000006
[OKCT] human gut metagenome; human gut
125328
125252
-
Val
GAC
[ENA]
¢þ
>WENV182826564
OKCT01000010
[OKCT] human gut metagenome; human gut
143597
143522
-
Ala
GGC
[ENA]
¢þ
>WENV182826556
OKCT01000004
[OKCT] human gut metagenome; human gut
169962
169873
-
Ser
CGA
[ENA]
¢þ
>WENV182826552
OKCT01000004
[OKCT] human gut metagenome; human gut
170954
171029
+
Asn
GTT
[ENA]
¢þ
>WENV182826547
OKCT01000001
[OKCT] human gut metagenome; human gut
180622
180549
-
Gly
CCC
[ENA]
¢þ
>WENV182826555
OKCT01000004
[OKCT] human gut metagenome; human gut
185413
185338
-
Asn
GTT
[ENA]
¢þ
>WENV182826553
OKCT01000004
[OKCT] human gut metagenome; human gut
187162
187237
+
Asn
GTT
[ENA]
¢þ
>WENV182826551
OKCT01000003
[OKCT] human gut metagenome; human gut
188415
188340
-
Ile2
CAT
[ENA]
¢þ
>WENV182826554
OKCT01000004
[OKCT] human gut metagenome; human gut
189570
189645
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK