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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKDC] human gut metagenome; human gut
HIT:
135 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182827711
OKDC01000007
[OKDC] human gut metagenome; human gut
1
76
+
Val
TAC
[ENA]
¢þ
>WENV182827807
OKDC01002588
[OKDC] human gut metagenome; human gut
42
113
+
Arg
CCG
[ENA]
¢þ
>WENV182827813
OKDC01004576
[OKDC] human gut metagenome; human gut
67
142
+
Thr
TGT
[ENA]
¢þ
>WENV182827750
OKDC01000130
[OKDC] human gut metagenome; human gut
68
143
+
Trp
CCA
[ENA]
¢þ
>WENV182827820
OKDC01004819
[OKDC] human gut metagenome; human gut
71
1
-
Asn
GTT
[ENA]
¢þ
>WENV182827770
OKDC01000199
[OKDC] human gut metagenome; human gut
102
177
+
Trp
CCA
[ENA]
¢þ
>WENV182827712
OKDC01000007
[OKDC] human gut metagenome; human gut
121
196
+
Val
TAC
[ENA]
¢þ
>WENV182827822
OKDC01005318
[OKDC] human gut metagenome; human gut
124
51
-
Lys
TTT
[ENA]
¢þ
>WENV182827814
OKDC01004576
[OKDC] human gut metagenome; human gut
148
222
+
Lys
TTT
[ENA]
¢þ
>WENV182827809
OKDC01004053
[OKDC] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182827830
OKDC01005796
[OKDC] human gut metagenome; human gut
167
94
-
Phe
GAA
[ENA]
¢þ
>WENV182827821
OKDC01005039
[OKDC] human gut metagenome; human gut
178
103
-
Arg
TCT
[ENA]
¢þ
>WENV182827825
OKDC01005675
[OKDC] human gut metagenome; human gut
232
157
-
Thr
GGT
[ENA]
¢þ
>WENV182827815
OKDC01004576
[OKDC] human gut metagenome; human gut
240
314
+
Gly
GCC
[ENA]
¢þ
>WENV182827713
OKDC01000007
[OKDC] human gut metagenome; human gut
256
331
+
Val
TAC
[ENA]
¢þ
>WENV182827829
OKDC01005796
[OKDC] human gut metagenome; human gut
260
186
-
Asp
GTC
[ENA]
¢þ
>WENV182827810
OKDC01004310
[OKDC] human gut metagenome; human gut
304
222
-
Leu
TAG
[ENA]
¢þ
>WENV182827802
OKDC01001674
[OKDC] human gut metagenome; human gut
305
394
+
Ser
CGA
[ENA]
¢þ
>WENV182827800
OKDC01001357
[OKDC] human gut metagenome; human gut
306
380
+
Arg
CCG
[ENA]
¢þ
>WENV182827824
OKDC01005675
[OKDC] human gut metagenome; human gut
310
236
-
Gly
TCC
[ENA]
¢þ
>WENV182827828
OKDC01005736
[OKDC] human gut metagenome; human gut
324
254
-
Phe
GAA
[ENA]
¢þ
>WENV182827816
OKDC01004576
[OKDC] human gut metagenome; human gut
326
414
+
Leu
TAA
[ENA]
¢þ
>WENV182827812
OKDC01004573
[OKDC] human gut metagenome; human gut
340
414
+
Ile2
CAT
[ENA]
¢þ
>WENV182827714
OKDC01000007
[OKDC] human gut metagenome; human gut
376
451
+
Val
TAC
[ENA]
¢þ
>WENV182827827
OKDC01005736
[OKDC] human gut metagenome; human gut
396
322
-
Sup
TCA
[ENA]
¢þ
>WENV182827817
OKDC01004576
[OKDC] human gut metagenome; human gut
426
501
+
Arg
ACG
[ENA]
¢þ
>WENV182827823
OKDC01005675
[OKDC] human gut metagenome; human gut
436
352
-
Tyr
GTA
[ENA]
¢þ
>WENV182827826
OKDC01005736
[OKDC] human gut metagenome; human gut
468
398
-
Val
TAC
[ENA]
¢þ
>WENV182827808
OKDC01003247
[OKDC] human gut metagenome; human gut
506
581
+
Arg
TCT
[ENA]
¢þ
>WENV182827818
OKDC01004576
[OKDC] human gut metagenome; human gut
510
583
+
Pro
TGG
[ENA]
¢þ
>WENV182827819
OKDC01004576
[OKDC] human gut metagenome; human gut
601
676
+
Ala
TGC
[ENA]
¢þ
>WENV182827811
OKDC01004531
[OKDC] human gut metagenome; human gut
663
578
-
Ser
TGA
[ENA]
¢þ
>WENV182827787
OKDC01000890
[OKDC] human gut metagenome; human gut
675
600
-
Ile2
CAT
[ENA]
¢þ
>WENV182827772
OKDC01000230
[OKDC] human gut metagenome; human gut
792
868
+
Pro
TGG
[ENA]
¢þ
>WENV182827806
OKDC01002440
[OKDC] human gut metagenome; human gut
906
818
-
Ser
CGA
[ENA]
¢þ
>WENV182827803
OKDC01001750
[OKDC] human gut metagenome; human gut
938
1013
+
Asn
GTT
[ENA]
¢þ
>WENV182827801
OKDC01001646
[OKDC] human gut metagenome; human gut
946
870
-
Pro
CGG
[ENA]
¢þ
>WENV182827786
OKDC01000835
[OKDC] human gut metagenome; human gut
1175
1250
+
Phe
GAA
[ENA]
¢þ
>WENV182827789
OKDC01000942
[OKDC] human gut metagenome; human gut
1201
1113
-
Ser
GGA
[ENA]
¢þ
>WENV182827805
OKDC01002302
[OKDC] human gut metagenome; human gut
1310
1234
-
Arg
ACG
[ENA]
¢þ
>WENV182827788
OKDC01000942
[OKDC] human gut metagenome; human gut
1327
1256
-
Glu
TTC
[ENA]
¢þ
>WENV182827696
OKDC01000001
[OKDC] human gut metagenome; human gut
1446
1531
+
Leu
CAA
[ENA]
¢þ
>WENV182827799
OKDC01001208
[OKDC] human gut metagenome; human gut
1496
1413
-
Leu
CAA
[ENA]
¢þ
>WENV182827798
OKDC01001208
[OKDC] human gut metagenome; human gut
1694
1621
-
Cys
GCA
[ENA]
¢þ
>WENV182827797
OKDC01001208
[OKDC] human gut metagenome; human gut
1771
1700
-
Gln
TTG
[ENA]
¢þ
>WENV182827804
OKDC01001781
[OKDC] human gut metagenome; human gut
1784
1711
-
Gly
CCC
[ENA]
¢þ
>WENV182827796
OKDC01001208
[OKDC] human gut metagenome; human gut
1855
1782
-
His
GTG
[ENA]
¢þ
>WENV182827795
OKDC01001208
[OKDC] human gut metagenome; human gut
1942
1868
-
Phe
GAA
[ENA]
¢þ
>WENV182827794
OKDC01001208
[OKDC] human gut metagenome; human gut
2035
1960
-
Asp
GTC
[ENA]
¢þ
>WENV182827793
OKDC01001208
[OKDC] human gut metagenome; human gut
2119
2044
-
fMet
CAT
[ENA]
¢þ
>WENV182827783
OKDC01000497
[OKDC] human gut metagenome; human gut
2192
2117
-
Asn
GTT
[ENA]
¢þ
>WENV182827792
OKDC01001208
[OKDC] human gut metagenome; human gut
2225
2133
-
Ser
TGA
[ENA]
¢þ
>WENV182827791
OKDC01001208
[OKDC] human gut metagenome; human gut
2308
2235
-
Ile2
CAT
[ENA]
¢þ
>WENV182827790
OKDC01001208
[OKDC] human gut metagenome; human gut
2410
2336
-
Met
CAT
[ENA]
¢þ
>WENV182827780
OKDC01000344
[OKDC] human gut metagenome; human gut
2484
2557
+
Arg
CCT
[ENA]
¢þ
>WENV182827733
OKDC01000044
[OKDC] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182827734
OKDC01000044
[OKDC] human gut metagenome; human gut
2871
2946
+
Ala
GGC
[ENA]
¢þ
>WENV182827779
OKDC01000315
[OKDC] human gut metagenome; human gut
3275
3361
+
Leu
GAG
[ENA]
¢þ
>WENV182827768
OKDC01000191
[OKDC] human gut metagenome; human gut
3276
3362
+
Leu
GAG
[ENA]
¢þ
>WENV182827758
OKDC01000161
[OKDC] human gut metagenome; human gut
3339
3265
-
Gln
CTG
[ENA]
¢þ
>WENV182827757
OKDC01000161
[OKDC] human gut metagenome; human gut
3448
3374
-
Gln
CTG
[ENA]
¢þ
>WENV182827782
OKDC01000474
[OKDC] human gut metagenome; human gut
3502
3578
+
Pro
GGG
[ENA]
¢þ
>WENV182827756
OKDC01000161
[OKDC] human gut metagenome; human gut
3566
3490
-
Met
CAT
[ENA]
¢þ
>WENV182827755
OKDC01000161
[OKDC] human gut metagenome; human gut
3658
3584
-
Gln
TTG
[ENA]
¢þ
>WENV182827754
OKDC01000161
[OKDC] human gut metagenome; human gut
3765
3691
-
Gln
TTG
[ENA]
¢þ
>WENV182827784
OKDC01000555
[OKDC] human gut metagenome; human gut
3771
3696
-
Asn
GTT
[ENA]
¢þ
>WENV182827765
OKDC01000182
[OKDC] human gut metagenome; human gut
3775
3699
-
Asp
GTC
[ENA]
¢þ
>WENV182827753
OKDC01000161
[OKDC] human gut metagenome; human gut
3873
3789
-
Leu
TAG
[ENA]
¢þ
>WENV182827752
OKDC01000161
[OKDC] human gut metagenome; human gut
3958
3882
-
Met
CAT
[ENA]
¢þ
>WENV182827785
OKDC01000587
[OKDC] human gut metagenome; human gut
4066
4141
+
Arg
TCT
[ENA]
¢þ
>WENV182827749
OKDC01000109
[OKDC] human gut metagenome; human gut
4586
4501
-
Leu
GAG
[ENA]
¢þ
>WENV182827777
OKDC01000275
[OKDC] human gut metagenome; human gut
4697
4603
-
SeC
TCA
[ENA]
¢þ
>WENV182827732
OKDC01000035
[OKDC] human gut metagenome; human gut
4957
4881
-
Arg
TCT
[ENA]
¢þ
>WENV182827769
OKDC01000191
[OKDC] human gut metagenome; human gut
5149
5225
+
fMet
CAT
[ENA]
¢þ
>WENV182827759
OKDC01000167
[OKDC] human gut metagenome; human gut
5201
5288
+
Ser
GGA
[ENA]
¢þ
>WENV182827781
OKDC01000440
[OKDC] human gut metagenome; human gut
5327
5402
+
Lys
TTT
[ENA]
¢þ
>WENV182827767
OKDC01000190
[OKDC] human gut metagenome; human gut
5416
5332
-
Tyr
GTA
[ENA]
¢þ
>WENV182827766
OKDC01000190
[OKDC] human gut metagenome; human gut
5535
5451
-
Tyr
GTA
[ENA]
¢þ
>WENV182827778
OKDC01000289
[OKDC] human gut metagenome; human gut
7311
7405
+
SeC
TCA
[ENA]
¢þ
>WENV182827763
OKDC01000175
[OKDC] human gut metagenome; human gut
7599
7524
-
Thr
TGT
[ENA]
¢þ
>WENV182827760
OKDC01000167
[OKDC] human gut metagenome; human gut
8108
8195
+
Ser
GGA
[ENA]
¢þ
>WENV182827773
OKDC01000230
[OKDC] human gut metagenome; human gut
8505
8580
+
Thr
TGT
[ENA]
¢þ
>WENV182827774
OKDC01000230
[OKDC] human gut metagenome; human gut
8589
8673
+
Tyr
GTA
[ENA]
¢þ
>WENV182827775
OKDC01000230
[OKDC] human gut metagenome; human gut
8790
8864
+
Gly
TCC
[ENA]
¢þ
>WENV182827776
OKDC01000230
[OKDC] human gut metagenome; human gut
8871
8946
+
Thr
GGT
[ENA]
¢þ
>WENV182827726
OKDC01000021
[OKDC] human gut metagenome; human gut
8962
8886
-
Arg
ACG
[ENA]
¢þ
>WENV182827762
OKDC01000170
[OKDC] human gut metagenome; human gut
9045
8970
-
Asn
GTT
[ENA]
¢þ
>WENV182827725
OKDC01000021
[OKDC] human gut metagenome; human gut
9092
9016
-
Arg
ACG
[ENA]
¢þ
>WENV182827724
OKDC01000021
[OKDC] human gut metagenome; human gut
9210
9117
-
Ser
GCT
[ENA]
¢þ
>WENV182827771
OKDC01000208
[OKDC] human gut metagenome; human gut
9526
9601
+
Phe
GAA
[ENA]
¢þ
>WENV182827731
OKDC01000030
[OKDC] human gut metagenome; human gut
10066
10142
+
fMet
CAT
[ENA]
¢þ
>WENV182827761
OKDC01000170
[OKDC] human gut metagenome; human gut
10794
10869
+
Asn
GTT
[ENA]
¢þ
>WENV182827748
OKDC01000109
[OKDC] human gut metagenome; human gut
12290
12215
-
Asn
GTT
[ENA]
¢þ
>WENV182827747
OKDC01000109
[OKDC] human gut metagenome; human gut
12368
12293
-
Phe
GAA
[ENA]
¢þ
>WENV182827740
OKDC01000063
[OKDC] human gut metagenome; human gut
12837
12913
+
fMet
CAT
[ENA]
¢þ
>WENV182827764
OKDC01000182
[OKDC] human gut metagenome; human gut
13209
13133
-
Asp
GTC
[ENA]
¢þ
>WENV182827744
OKDC01000064
[OKDC] human gut metagenome; human gut
13294
13388
+
SeC
TCA
[ENA]
¢þ
>WENV182827727
OKDC01000023
[OKDC] human gut metagenome; human gut
13799
13875
+
Arg
CCG
[ENA]
¢þ
>WENV182827728
OKDC01000023
[OKDC] human gut metagenome; human gut
13943
14018
+
His
GTG
[ENA]
¢þ
>WENV182827729
OKDC01000023
[OKDC] human gut metagenome; human gut
14040
14126
+
Leu
CAG
[ENA]
¢þ
>WENV182827730
OKDC01000023
[OKDC] human gut metagenome; human gut
14171
14247
+
Pro
TGG
[ENA]
¢þ
>WENV182827751
OKDC01000141
[OKDC] human gut metagenome; human gut
16018
16093
+
Thr
CGT
[ENA]
¢þ
>WENV182827745
OKDC01000084
[OKDC] human gut metagenome; human gut
19244
19328
+
Leu
CAA
[ENA]
¢þ
>WENV182827739
OKDC01000060
[OKDC] human gut metagenome; human gut
19528
19453
-
Phe
GAA
[ENA]
¢þ
>WENV182827735
OKDC01000044
[OKDC] human gut metagenome; human gut
21166
21094
-
Arg
CCT
[ENA]
¢þ
>WENV182827741
OKDC01000063
[OKDC] human gut metagenome; human gut
21206
21281
+
Gly
GCC
[ENA]
¢þ
>WENV182827742
OKDC01000063
[OKDC] human gut metagenome; human gut
21286
21372
+
Leu
TAA
[ENA]
¢þ
>WENV182827743
OKDC01000063
[OKDC] human gut metagenome; human gut
21391
21466
+
Lys
TTT
[ENA]
¢þ
>WENV182827746
OKDC01000088
[OKDC] human gut metagenome; human gut
24784
24860
+
Pro
GGG
[ENA]
¢þ
>WENV182827715
OKDC01000009
[OKDC] human gut metagenome; human gut
26020
26096
+
Ile2
CAT
[ENA]
¢þ
>WENV182827736
OKDC01000046
[OKDC] human gut metagenome; human gut
27281
27356
+
Gly
GCC
[ENA]
¢þ
>WENV182827737
OKDC01000046
[OKDC] human gut metagenome; human gut
27408
27481
+
Cys
GCA
[ENA]
¢þ
>WENV182827738
OKDC01000046
[OKDC] human gut metagenome; human gut
27493
27579
+
Leu
TAA
[ENA]
¢þ
>WENV182827702
OKDC01000003
[OKDC] human gut metagenome; human gut
36359
36284
-
Asn
GTT
[ENA]
¢þ
>WENV182827710
OKDC01000006
[OKDC] human gut metagenome; human gut
36719
36644
-
Lys
CTT
[ENA]
¢þ
>WENV182827709
OKDC01000006
[OKDC] human gut metagenome; human gut
36825
36750
-
Lys
TTT
[ENA]
¢þ
>WENV182827708
OKDC01000006
[OKDC] human gut metagenome; human gut
36926
36851
-
Lys
TTT
[ENA]
¢þ
>WENV182827719
OKDC01000012
[OKDC] human gut metagenome; human gut
45195
45119
-
Val
GAC
[ENA]
¢þ
>WENV182827718
OKDC01000012
[OKDC] human gut metagenome; human gut
45276
45200
-
Val
GAC
[ENA]
¢þ
>WENV182827716
OKDC01000011
[OKDC] human gut metagenome; human gut
50327
50414
+
Ser
TGA
[ENA]
¢þ
>WENV182827717
OKDC01000011
[OKDC] human gut metagenome; human gut
55869
55956
+
Ser
TGA
[ENA]
¢þ
>WENV182827720
OKDC01000019
[OKDC] human gut metagenome; human gut
59505
59581
+
Met
CAT
[ENA]
¢þ
>WENV182827721
OKDC01000019
[OKDC] human gut metagenome; human gut
59587
59671
+
Leu
TAG
[ENA]
¢þ
>WENV182827722
OKDC01000019
[OKDC] human gut metagenome; human gut
59699
59773
+
Gln
TTG
[ENA]
¢þ
>WENV182827723
OKDC01000019
[OKDC] human gut metagenome; human gut
59821
59895
+
Gln
TTG
[ENA]
¢þ
>WENV182827707
OKDC01000006
[OKDC] human gut metagenome; human gut
62168
62079
-
Ser
TGA
[ENA]
¢þ
>WENV182827698
OKDC01000001
[OKDC] human gut metagenome; human gut
64743
64667
-
fMet
CAT
[ENA]
¢þ
>WENV182827703
OKDC01000004
[OKDC] human gut metagenome; human gut
86869
86958
+
Ser
GGA
[ENA]
¢þ
>WENV182827705
OKDC01000004
[OKDC] human gut metagenome; human gut
87195
87119
-
Arg
TCT
[ENA]
¢þ
>WENV182827704
OKDC01000004
[OKDC] human gut metagenome; human gut
87324
87248
-
Pro
TGG
[ENA]
¢þ
>WENV182827706
OKDC01000006
[OKDC] human gut metagenome; human gut
90347
90272
-
Ala
GGC
[ENA]
¢þ
>WENV182827699
OKDC01000003
[OKDC] human gut metagenome; human gut
104149
104225
+
Arg
CCG
[ENA]
¢þ
>WENV182827700
OKDC01000003
[OKDC] human gut metagenome; human gut
104257
104332
+
His
GTG
[ENA]
¢þ
>WENV182827701
OKDC01000003
[OKDC] human gut metagenome; human gut
104357
104433
+
Pro
TGG
[ENA]
¢þ
>WENV182827697
OKDC01000001
[OKDC] human gut metagenome; human gut
129511
129587
+
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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