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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKDK] human gut metagenome; human gut
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182828904
OKDK01001563
[OKDK] human gut metagenome; human gut
16
102
+
Leu
GAG
[ENA]
¢þ
>WENV182828903
OKDK01001501
[OKDK] human gut metagenome; human gut
60
133
+
Phe
GAA
[ENA]
¢þ
>WENV182828920
OKDK01003069
[OKDK] human gut metagenome; human gut
70
143
+
Gly
TCC
[ENA]
¢þ
>WENV182828919
OKDK01002948
[OKDK] human gut metagenome; human gut
98
24
-
Asn
GTT
[ENA]
¢þ
>WENV182828898
OKDK01000963
[OKDK] human gut metagenome; human gut
105
30
-
Lys
CTT
[ENA]
¢þ
>WENV182828901
OKDK01001240
[OKDK] human gut metagenome; human gut
131
56
-
His
GTG
[ENA]
¢þ
>WENV182828912
OKDK01002216
[OKDK] human gut metagenome; human gut
145
221
+
Ile
GAT
[ENA]
¢þ
>WENV182828921
OKDK01003069
[OKDK] human gut metagenome; human gut
153
227
+
Asn
GTT
[ENA]
¢þ
>WENV182828875
OKDK01000390
[OKDK] human gut metagenome; human gut
163
87
-
fMet
CAT
[ENA]
¢þ
>WENV182828902
OKDK01001392
[OKDK] human gut metagenome; human gut
168
257
+
Ser
CGA
[ENA]
¢þ
>WENV182828932
OKDK01004067
[OKDK] human gut metagenome; human gut
173
248
+
Thr
CGT
[ENA]
¢þ
>WENV182828908
OKDK01001864
[OKDK] human gut metagenome; human gut
203
297
+
SeC
TCA
[ENA]
¢þ
>WENV182828922
OKDK01003069
[OKDK] human gut metagenome; human gut
229
303
+
Glu
TTC
[ENA]
¢þ
>WENV182828900
OKDK01001240
[OKDK] human gut metagenome; human gut
263
187
-
Arg
CCG
[ENA]
¢þ
>WENV182828923
OKDK01003069
[OKDK] human gut metagenome; human gut
311
386
+
Asp
GTC
[ENA]
¢þ
>WENV182828930
OKDK01003495
[OKDK] human gut metagenome; human gut
342
417
+
Phe
GAA
[ENA]
¢þ
>WENV182828933
OKDK01004848
[OKDK] human gut metagenome; human gut
348
421
+
Arg
ACG
[ENA]
¢þ
>WENV182828876
OKDK01000455
[OKDK] human gut metagenome; human gut
354
426
+
Gln
CTG
[ENA]
¢þ
>WENV182828926
OKDK01003083
[OKDK] human gut metagenome; human gut
370
296
-
Ile2
CAT
[ENA]
¢þ
>WENV182828924
OKDK01003069
[OKDK] human gut metagenome; human gut
419
511
+
Ser
TGA
[ENA]
¢þ
>WENV182828913
OKDK01002258
[OKDK] human gut metagenome; human gut
426
501
+
Gly
GCC
[ENA]
¢þ
>WENV182828880
OKDK01000481
[OKDK] human gut metagenome; human gut
435
361
-
Gly
TCC
[ENA]
¢þ
>WENV182828897
OKDK01000854
[OKDK] human gut metagenome; human gut
463
390
-
Gly
CCC
[ENA]
¢þ
>WENV182828877
OKDK01000455
[OKDK] human gut metagenome; human gut
465
538
+
Glu
CTC
[ENA]
¢þ
>WENV182828928
OKDK01003293
[OKDK] human gut metagenome; human gut
489
564
+
Glu
TTC
[ENA]
¢þ
>WENV182828931
OKDK01003841
[OKDK] human gut metagenome; human gut
500
424
-
Asp
GTC
[ENA]
¢þ
>WENV182828916
OKDK01002307
[OKDK] human gut metagenome; human gut
504
578
+
Gly
TCC
[ENA]
¢þ
>WENV182828918
OKDK01002860
[OKDK] human gut metagenome; human gut
511
585
+
Arg
CCT
[ENA]
¢þ
>WENV182828911
OKDK01002157
[OKDK] human gut metagenome; human gut
514
438
-
Val
GAC
[ENA]
¢þ
>WENV182828925
OKDK01003069
[OKDK] human gut metagenome; human gut
523
596
+
fMet
CAT
[ENA]
¢þ
>WENV182828894
OKDK01000705
[OKDK] human gut metagenome; human gut
525
452
-
Thr
TGT
[ENA]
¢þ
>WENV182828917
OKDK01002553
[OKDK] human gut metagenome; human gut
526
602
+
Pro
CGG
[ENA]
¢þ
>WENV182828914
OKDK01002258
[OKDK] human gut metagenome; human gut
542
615
+
Cys
GCA
[ENA]
¢þ
>WENV182828927
OKDK01003152
[OKDK] human gut metagenome; human gut
570
646
+
Leu
TAA
[ENA]
¢þ
>WENV182828929
OKDK01003293
[OKDK] human gut metagenome; human gut
600
674
+
Asp
GTC
[ENA]
¢þ
>WENV182828915
OKDK01002258
[OKDK] human gut metagenome; human gut
629
715
+
Leu
TAA
[ENA]
¢þ
>WENV182828910
OKDK01001947
[OKDK] human gut metagenome; human gut
674
749
+
Asn
GTT
[ENA]
¢þ
>WENV182828899
OKDK01001006
[OKDK] human gut metagenome; human gut
701
625
-
fMet
CAT
[ENA]
¢þ
>WENV182828905
OKDK01001573
[OKDK] human gut metagenome; human gut
756
844
+
Ser
CGA
[ENA]
¢þ
>WENV182828909
OKDK01001865
[OKDK] human gut metagenome; human gut
769
851
+
Leu
TAG
[ENA]
¢þ
>WENV182828907
OKDK01001863
[OKDK] human gut metagenome; human gut
779
853
+
Pro
CGG
[ENA]
¢þ
>WENV182828889
OKDK01000661
[OKDK] human gut metagenome; human gut
835
923
+
Ser
GCT
[ENA]
¢þ
>WENV182828896
OKDK01000761
[OKDK] human gut metagenome; human gut
858
783
-
Lys
TTT
[ENA]
¢þ
>WENV182828881
OKDK01000504
[OKDK] human gut metagenome; human gut
930
1004
+
Arg
CCG
[ENA]
¢þ
>WENV182828906
OKDK01001584
[OKDK] human gut metagenome; human gut
934
859
-
Thr
CGT
[ENA]
¢þ
>WENV182828895
OKDK01000761
[OKDK] human gut metagenome; human gut
938
863
-
Val
TAC
[ENA]
¢þ
>WENV182828860
OKDK01000045
[OKDK] human gut metagenome; human gut
952
1027
+
Val
TAC
[ENA]
¢þ
>WENV182828893
OKDK01000690
[OKDK] human gut metagenome; human gut
957
885
-
Val
CAC
[ENA]
¢þ
>WENV182828886
OKDK01000610
[OKDK] human gut metagenome; human gut
1065
1151
+
Leu
CAG
[ENA]
¢þ
>WENV182828887
OKDK01000610
[OKDK] human gut metagenome; human gut
1194
1270
+
Pro
TGG
[ENA]
¢þ
>WENV182828885
OKDK01000608
[OKDK] human gut metagenome; human gut
1195
1101
-
SeC
TCA
[ENA]
¢þ
>WENV182828890
OKDK01000690
[OKDK] human gut metagenome; human gut
1203
1278
+
Gly
GCC
[ENA]
¢þ
>WENV182828888
OKDK01000652
[OKDK] human gut metagenome; human gut
1309
1234
-
His
GTG
[ENA]
¢þ
>WENV182828891
OKDK01000690
[OKDK] human gut metagenome; human gut
1309
1380
+
Cys
GCA
[ENA]
¢þ
>WENV182828884
OKDK01000546
[OKDK] human gut metagenome; human gut
1360
1285
-
Thr
GGT
[ENA]
¢þ
>WENV182828878
OKDK01000477
[OKDK] human gut metagenome; human gut
1370
1446
+
Met
CAT
[ENA]
¢þ
>WENV182828892
OKDK01000690
[OKDK] human gut metagenome; human gut
1407
1479
+
Val
GAC
[ENA]
¢þ
>WENV182828883
OKDK01000546
[OKDK] human gut metagenome; human gut
1440
1366
-
Gly
TCC
[ENA]
¢þ
>WENV182828879
OKDK01000477
[OKDK] human gut metagenome; human gut
1494
1568
+
Gln
CTG
[ENA]
¢þ
>WENV182828874
OKDK01000386
[OKDK] human gut metagenome; human gut
1518
1605
+
Ser
GGA
[ENA]
¢þ
>WENV182828882
OKDK01000546
[OKDK] human gut metagenome; human gut
1640
1556
-
Tyr
GTA
[ENA]
¢þ
>WENV182828873
OKDK01000270
[OKDK] human gut metagenome; human gut
1762
1688
-
Pro
TGG
[ENA]
¢þ
>WENV182828869
OKDK01000126
[OKDK] human gut metagenome; human gut
1814
1902
+
Ser
GGA
[ENA]
¢þ
>WENV182828870
OKDK01000133
[OKDK] human gut metagenome; human gut
2139
2064
-
Arg
TCT
[ENA]
¢þ
>WENV182828872
OKDK01000183
[OKDK] human gut metagenome; human gut
2527
2600
+
Asn
GTT
[ENA]
¢þ
>WENV182828861
OKDK01000098
[OKDK] human gut metagenome; human gut
2635
2710
+
Val
TAC
[ENA]
¢þ
>WENV182828862
OKDK01000098
[OKDK] human gut metagenome; human gut
2717
2792
+
Thr
TGT
[ENA]
¢þ
>WENV182828856
OKDK01000006
[OKDK] human gut metagenome; human gut
2723
2796
+
Gly
CCC
[ENA]
¢þ
>WENV182828871
OKDK01000145
[OKDK] human gut metagenome; human gut
2785
2859
+
Leu
CAA
[ENA]
¢þ
>WENV182828857
OKDK01000024
[OKDK] human gut metagenome; human gut
2786
2861
+
Glu
TTC
[ENA]
¢þ
>WENV182828863
OKDK01000098
[OKDK] human gut metagenome; human gut
2798
2872
+
Lys
TTT
[ENA]
¢þ
>WENV182828864
OKDK01000098
[OKDK] human gut metagenome; human gut
2890
2964
+
Gly
GCC
[ENA]
¢þ
>WENV182828865
OKDK01000098
[OKDK] human gut metagenome; human gut
2976
3064
+
Leu
TAA
[ENA]
¢þ
>WENV182828866
OKDK01000098
[OKDK] human gut metagenome; human gut
3080
3154
+
Arg
ACG
[ENA]
¢þ
>WENV182828867
OKDK01000098
[OKDK] human gut metagenome; human gut
3163
3236
+
Pro
TGG
[ENA]
¢þ
>WENV182828868
OKDK01000098
[OKDK] human gut metagenome; human gut
3253
3328
+
Ala
TGC
[ENA]
¢þ
>WENV182828858
OKDK01000026
[OKDK] human gut metagenome; human gut
3343
3419
+
Ile
GAT
[ENA]
¢þ
>WENV182828859
OKDK01000026
[OKDK] human gut metagenome; human gut
3429
3502
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK