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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKDU] human gut metagenome; human gut
HIT:
67 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182829959
OKDU01001018
[OKDU] human gut metagenome; human gut
19
104
+
Ser
GGA
[ENA]
¢þ
>WENV182829970
OKDU01001863
[OKDU] human gut metagenome; human gut
27
100
+
Arg
CCT
[ENA]
¢þ
>WENV182829980
OKDU01003005
[OKDU] human gut metagenome; human gut
27
101
+
Ile2
CAT
[ENA]
¢þ
>WENV182829932
OKDU01000067
[OKDU] human gut metagenome; human gut
90
17
-
Glu
TTC
[ENA]
¢þ
>WENV182829982
OKDU01003554
[OKDU] human gut metagenome; human gut
125
49
-
Pro
CGG
[ENA]
¢þ
>WENV182829977
OKDU01002781
[OKDU] human gut metagenome; human gut
125
52
-
Arg
ACG
[ENA]
¢þ
>WENV182829981
OKDU01003479
[OKDU] human gut metagenome; human gut
135
207
+
Arg
CCT
[ENA]
¢þ
>WENV182829987
OKDU01004292
[OKDU] human gut metagenome; human gut
138
223
+
Ser
TGA
[ENA]
¢þ
>WENV182829975
OKDU01002589
[OKDU] human gut metagenome; human gut
146
218
+
Arg
CCG
[ENA]
¢þ
>WENV182829986
OKDU01004148
[OKDU] human gut metagenome; human gut
147
73
-
Lys
TTT
[ENA]
¢þ
>WENV182829994
OKDU01004547
[OKDU] human gut metagenome; human gut
160
86
-
Ala
TGC
[ENA]
¢þ
>WENV182829931
OKDU01000067
[OKDU] human gut metagenome; human gut
165
91
-
Asn
GTT
[ENA]
¢þ
>WENV182829979
OKDU01002887
[OKDU] human gut metagenome; human gut
183
96
-
Ser
GGA
[ENA]
¢þ
>WENV182829984
OKDU01003788
[OKDU] human gut metagenome; human gut
185
259
+
Ala
TGC
[ENA]
¢þ
>WENV182829957
OKDU01000826
[OKDU] human gut metagenome; human gut
196
110
-
Leu
GAG
[ENA]
¢þ
>WENV182829973
OKDU01002205
[OKDU] human gut metagenome; human gut
222
297
+
Thr
TGT
[ENA]
¢þ
>WENV182829962
OKDU01001111
[OKDU] human gut metagenome; human gut
237
310
+
Gly
TCC
[ENA]
¢þ
>WENV182829995
OKDU01004701
[OKDU] human gut metagenome; human gut
243
315
+
Gln
CTG
[ENA]
¢þ
>WENV182829993
OKDU01004547
[OKDU] human gut metagenome; human gut
246
173
-
Pro
TGG
[ENA]
¢þ
>WENV182829988
OKDU01004369
[OKDU] human gut metagenome; human gut
325
398
+
Ala
GGC
[ENA]
¢þ
>WENV182829992
OKDU01004547
[OKDU] human gut metagenome; human gut
329
255
-
Arg
ACG
[ENA]
¢þ
>WENV182829985
OKDU01004046
[OKDU] human gut metagenome; human gut
342
426
+
Leu
CAA
[ENA]
¢þ
>WENV182829972
OKDU01002158
[OKDU] human gut metagenome; human gut
349
266
-
Leu
CAG
[ENA]
¢þ
>WENV182829989
OKDU01004477
[OKDU] human gut metagenome; human gut
376
303
-
Gly
CCC
[ENA]
¢þ
>WENV182829978
OKDU01002806
[OKDU] human gut metagenome; human gut
394
469
+
His
GTG
[ENA]
¢þ
>WENV182829952
OKDU01000650
[OKDU] human gut metagenome; human gut
424
508
+
Leu
CAA
[ENA]
¢þ
>WENV182829991
OKDU01004547
[OKDU] human gut metagenome; human gut
430
342
-
Leu
TAA
[ENA]
¢þ
>WENV182829974
OKDU01002515
[OKDU] human gut metagenome; human gut
431
506
+
Arg
TCT
[ENA]
¢þ
>WENV182829976
OKDU01002781
[OKDU] human gut metagenome; human gut
445
355
-
Ser
GCT
[ENA]
¢þ
>WENV182829996
OKDU01004701
[OKDU] human gut metagenome; human gut
451
523
+
Glu
CTC
[ENA]
¢þ
>WENV182829947
OKDU01000307
[OKDU] human gut metagenome; human gut
485
391
-
SeC
TCA
[ENA]
¢þ
>WENV182829990
OKDU01004547
[OKDU] human gut metagenome; human gut
516
442
-
Gly
GCC
[ENA]
¢þ
>WENV182829956
OKDU01000762
[OKDU] human gut metagenome; human gut
517
590
+
Gly
CCC
[ENA]
¢þ
>WENV182829944
OKDU01000153
[OKDU] human gut metagenome; human gut
551
475
-
Arg
TCT
[ENA]
¢þ
>WENV182829983
OKDU01003596
[OKDU] human gut metagenome; human gut
557
631
+
Val
TAC
[ENA]
¢þ
>WENV182829965
OKDU01001792
[OKDU] human gut metagenome; human gut
684
611
-
Asn
GTT
[ENA]
¢þ
>WENV182829958
OKDU01000983
[OKDU] human gut metagenome; human gut
726
651
-
Phe
GAA
[ENA]
¢þ
>WENV182829963
OKDU01001485
[OKDU] human gut metagenome; human gut
767
693
-
Lys
CTT
[ENA]
¢þ
>WENV182829964
OKDU01001774
[OKDU] human gut metagenome; human gut
779
854
+
Thr
CGT
[ENA]
¢þ
>WENV182829948
OKDU01000354
[OKDU] human gut metagenome; human gut
808
733
-
Gly
GCC
[ENA]
¢þ
>WENV182829945
OKDU01000170
[OKDU] human gut metagenome; human gut
925
1000
+
Glu
TTC
[ENA]
¢þ
>WENV182829971
OKDU01002142
[OKDU] human gut metagenome; human gut
945
872
-
Thr
CGT
[ENA]
¢þ
>WENV182829953
OKDU01000678
[OKDU] human gut metagenome; human gut
960
873
-
Ser
TGA
[ENA]
¢þ
>WENV182829969
OKDU01001810
[OKDU] human gut metagenome; human gut
982
910
-
Val
GAC
[ENA]
¢þ
>WENV182829967
OKDU01001797
[OKDU] human gut metagenome; human gut
992
919
-
Gly
TCC
[ENA]
¢þ
>WENV182829968
OKDU01001810
[OKDU] human gut metagenome; human gut
1054
983
-
Cys
GCA
[ENA]
¢þ
>WENV182829933
OKDU01000069
[OKDU] human gut metagenome; human gut
1068
1144
+
Arg
CCG
[ENA]
¢þ
>WENV182829930
OKDU01000018
[OKDU] human gut metagenome; human gut
1079
1003
-
fMet
CAT
[ENA]
¢þ
>WENV182829966
OKDU01001797
[OKDU] human gut metagenome; human gut
1101
1015
-
Leu
GAG
[ENA]
¢þ
>WENV182829951
OKDU01000585
[OKDU] human gut metagenome; human gut
1188
1263
+
Asn
GTT
[ENA]
¢þ
>WENV182829934
OKDU01000069
[OKDU] human gut metagenome; human gut
1212
1287
+
His
GTG
[ENA]
¢þ
>WENV182829935
OKDU01000069
[OKDU] human gut metagenome; human gut
1309
1395
+
Leu
CAG
[ENA]
¢þ
>WENV182829961
OKDU01001026
[OKDU] human gut metagenome; human gut
1344
1269
-
Phe
GAA
[ENA]
¢þ
>WENV182829954
OKDU01000685
[OKDU] human gut metagenome; human gut
1390
1314
-
Arg
TCT
[ENA]
¢þ
>WENV182829946
OKDU01000210
[OKDU] human gut metagenome; human gut
1399
1323
-
Asp
GTC
[ENA]
¢þ
>WENV182829936
OKDU01000069
[OKDU] human gut metagenome; human gut
1440
1516
+
Pro
TGG
[ENA]
¢þ
>WENV182829960
OKDU01001026
[OKDU] human gut metagenome; human gut
1479
1405
-
Asp
GTC
[ENA]
¢þ
>WENV182829949
OKDU01000414
[OKDU] human gut metagenome; human gut
1566
1658
+
Ser
GCT
[ENA]
¢þ
>WENV182829950
OKDU01000414
[OKDU] human gut metagenome; human gut
1663
1739
+
Arg
ACG
[ENA]
¢þ
>WENV182829955
OKDU01000738
[OKDU] human gut metagenome; human gut
1704
1629
-
Arg
TCT
[ENA]
¢þ
>WENV182829942
OKDU01000149
[OKDU] human gut metagenome; human gut
2641
2716
+
Ala
GGC
[ENA]
¢þ
>WENV182829941
OKDU01000138
[OKDU] human gut metagenome; human gut
2654
2579
-
Thr
GGT
[ENA]
¢þ
>WENV182829940
OKDU01000138
[OKDU] human gut metagenome; human gut
2735
2661
-
Gly
TCC
[ENA]
¢þ
>WENV182829943
OKDU01000149
[OKDU] human gut metagenome; human gut
2758
2833
+
Ala
GGC
[ENA]
¢þ
>WENV182829939
OKDU01000138
[OKDU] human gut metagenome; human gut
2936
2852
-
Tyr
GTA
[ENA]
¢þ
>WENV182829938
OKDU01000138
[OKDU] human gut metagenome; human gut
3020
2945
-
Thr
TGT
[ENA]
¢þ
>WENV182829937
OKDU01000078
[OKDU] human gut metagenome; human gut
3157
3232
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK