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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKEC] human gut metagenome; human gut
HIT:
145 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182830908
OKEC01000027
[OKEC] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182831027
OKEC01003250
[OKEC] human gut metagenome; human gut
64
139
+
Val
TAC
[ENA]
¢þ
>WENV182830909
OKEC01000029
[OKEC] human gut metagenome; human gut
67
141
+
Val
TAC
[ENA]
¢þ
>WENV182830968
OKEC01000402
[OKEC] human gut metagenome; human gut
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV182830988
OKEC01000904
[OKEC] human gut metagenome; human gut
74
1
-
Arg
CCG
[ENA]
¢þ
>WENV182830929
OKEC01000160
[OKEC] human gut metagenome; human gut
75
2
-
Arg
CCT
[ENA]
¢þ
>WENV182830922
OKEC01000063
[OKEC] human gut metagenome; human gut
77
147
+
Cys
GCA
[ENA]
¢þ
>WENV182831038
OKEC01003389
[OKEC] human gut metagenome; human gut
86
159
+
Glu
CTC
[ENA]
¢þ
>WENV182830910
OKEC01000029
[OKEC] human gut metagenome; human gut
146
220
+
Lys
TTT
[ENA]
¢þ
>WENV182831028
OKEC01003250
[OKEC] human gut metagenome; human gut
146
221
+
Thr
TGT
[ENA]
¢þ
>WENV182831006
OKEC01001866
[OKEC] human gut metagenome; human gut
158
83
-
Lys
TTT
[ENA]
¢þ
>WENV182830923
OKEC01000063
[OKEC] human gut metagenome; human gut
160
245
+
Leu
CAA
[ENA]
¢þ
>WENV182830987
OKEC01000901
[OKEC] human gut metagenome; human gut
171
96
-
Glu
TTC
[ENA]
¢þ
>WENV182831009
OKEC01002073
[OKEC] human gut metagenome; human gut
195
122
-
Asn
GTT
[ENA]
¢þ
>WENV182831013
OKEC01002263
[OKEC] human gut metagenome; human gut
200
126
-
Gly
TCC
[ENA]
¢þ
>WENV182831036
OKEC01003344
[OKEC] human gut metagenome; human gut
206
121
-
Ser
CGA
[ENA]
¢þ
>WENV182830994
OKEC01001014
[OKEC] human gut metagenome; human gut
206
132
-
Pro
CGG
[ENA]
¢þ
>WENV182831029
OKEC01003250
[OKEC] human gut metagenome; human gut
227
301
+
Lys
TTT
[ENA]
¢þ
>WENV182830911
OKEC01000029
[OKEC] human gut metagenome; human gut
235
318
+
Leu
TAG
[ENA]
¢þ
>WENV182831001
OKEC01001361
[OKEC] human gut metagenome; human gut
243
171
-
Gln
TTG
[ENA]
¢þ
>WENV182831020
OKEC01002559
[OKEC] human gut metagenome; human gut
252
326
+
Glu
TTC
[ENA]
¢þ
>WENV182831037
OKEC01003359
[OKEC] human gut metagenome; human gut
256
181
-
His
GTG
[ENA]
¢þ
>WENV182831033
OKEC01003265
[OKEC] human gut metagenome; human gut
257
331
+
fMet
CAT
[ENA]
¢þ
>WENV182831035
OKEC01003325
[OKEC] human gut metagenome; human gut
274
201
-
Thr
CGT
[ENA]
¢þ
>WENV182831030
OKEC01003250
[OKEC] human gut metagenome; human gut
319
393
+
Gly
GCC
[ENA]
¢þ
>WENV182831023
OKEC01002833
[OKEC] human gut metagenome; human gut
321
249
-
Gln
TTG
[ENA]
¢þ
>WENV182830912
OKEC01000029
[OKEC] human gut metagenome; human gut
324
399
+
Thr
TGT
[ENA]
¢þ
>WENV182830947
OKEC01000175
[OKEC] human gut metagenome; human gut
350
423
+
Gly
GCC
[ENA]
¢þ
>WENV182830984
OKEC01000814
[OKEC] human gut metagenome; human gut
355
430
+
Ile2
CAT
[ENA]
¢þ
>WENV182831004
OKEC01001640
[OKEC] human gut metagenome; human gut
392
305
-
Leu
CAG
[ENA]
¢þ
>WENV182831034
OKEC01003317
[OKEC] human gut metagenome; human gut
396
469
+
Ala
CGC
[ENA]
¢þ
>WENV182830913
OKEC01000029
[OKEC] human gut metagenome; human gut
404
475
+
Gly
GCC
[ENA]
¢þ
>WENV182831031
OKEC01003250
[OKEC] human gut metagenome; human gut
405
493
+
Leu
TAA
[ENA]
¢þ
>WENV182831039
OKEC01003540
[OKEC] human gut metagenome; human gut
408
495
+
Ser
TGA
[ENA]
¢þ
>WENV182830967
OKEC01000402
[OKEC] human gut metagenome; human gut
412
338
-
Ile
GAT
[ENA]
¢þ
>WENV182831026
OKEC01003189
[OKEC] human gut metagenome; human gut
424
338
-
Leu
CAA
[ENA]
¢þ
>WENV182830948
OKEC01000175
[OKEC] human gut metagenome; human gut
424
496
+
Val
GAC
[ENA]
¢þ
>WENV182831016
OKEC01002333
[OKEC] human gut metagenome; human gut
437
362
-
Met
CAT
[ENA]
¢þ
>WENV182831012
OKEC01002166
[OKEC] human gut metagenome; human gut
450
377
-
Lys
CTT
[ENA]
¢þ
>WENV182831000
OKEC01001291
[OKEC] human gut metagenome; human gut
464
537
+
Gly
CCC
[ENA]
¢þ
>WENV182830914
OKEC01000029
[OKEC] human gut metagenome; human gut
491
576
+
Leu
TAA
[ENA]
¢þ
>WENV182831032
OKEC01003250
[OKEC] human gut metagenome; human gut
506
582
+
Arg
ACG
[ENA]
¢þ
>WENV182830949
OKEC01000175
[OKEC] human gut metagenome; human gut
514
587
+
Gly
GCC
[ENA]
¢þ
>WENV182831022
OKEC01002659
[OKEC] human gut metagenome; human gut
523
449
-
Pro
CGG
[ENA]
¢þ
>WENV182831021
OKEC01002565
[OKEC] human gut metagenome; human gut
524
596
+
Asn
GTT
[ENA]
¢þ
>WENV182831011
OKEC01002166
[OKEC] human gut metagenome; human gut
538
463
-
Lys
CTT
[ENA]
¢þ
>WENV182831015
OKEC01002333
[OKEC] human gut metagenome; human gut
543
470
-
Thr
GGT
[ENA]
¢þ
>WENV182831019
OKEC01002541
[OKEC] human gut metagenome; human gut
543
618
+
Thr
CGT
[ENA]
¢þ
>WENV182831025
OKEC01003095
[OKEC] human gut metagenome; human gut
562
472
-
Ser
GCT
[ENA]
¢þ
>WENV182830915
OKEC01000029
[OKEC] human gut metagenome; human gut
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV182830950
OKEC01000175
[OKEC] human gut metagenome; human gut
603
674
+
Cys
GCA
[ENA]
¢þ
>WENV182831024
OKEC01003095
[OKEC] human gut metagenome; human gut
639
565
-
Asn
GTT
[ENA]
¢þ
>WENV182830925
OKEC01000102
[OKEC] human gut metagenome; human gut
659
748
+
Ser
CGA
[ENA]
¢þ
>WENV182830951
OKEC01000175
[OKEC] human gut metagenome; human gut
675
749
+
Val
CAC
[ENA]
¢þ
>WENV182830986
OKEC01000901
[OKEC] human gut metagenome; human gut
690
617
-
Lys
TTT
[ENA]
¢þ
>WENV182830924
OKEC01000096
[OKEC] human gut metagenome; human gut
698
772
+
Arg
TCT
[ENA]
¢þ
>WENV182831014
OKEC01002333
[OKEC] human gut metagenome; human gut
741
659
-
Tyr
GTA
[ENA]
¢þ
>WENV182830989
OKEC01000922
[OKEC] human gut metagenome; human gut
753
678
-
Lys
CTT
[ENA]
¢þ
>WENV182830916
OKEC01000029
[OKEC] human gut metagenome; human gut
754
827
+
Pro
TGG
[ENA]
¢þ
>WENV182830961
OKEC01000279
[OKEC] human gut metagenome; human gut
778
705
-
Trp
CCA
[ENA]
¢þ
>WENV182831005
OKEC01001823
[OKEC] human gut metagenome; human gut
836
912
+
fMet
CAT
[ENA]
¢þ
>WENV182830901
OKEC01000004
[OKEC] human gut metagenome; human gut
863
791
-
Thr
CGT
[ENA]
¢þ
>WENV182831018
OKEC01002444
[OKEC] human gut metagenome; human gut
880
953
+
Arg
TCT
[ENA]
¢þ
>WENV182830998
OKEC01001137
[OKEC] human gut metagenome; human gut
913
1007
+
SeC
TCA
[ENA]
¢þ
>WENV182830963
OKEC01000360
[OKEC] human gut metagenome; human gut
966
1039
+
Ala
GGC
[ENA]
¢þ
>WENV182831017
OKEC01002334
[OKEC] human gut metagenome; human gut
980
905
-
Thr
TGT
[ENA]
¢þ
>WENV182830960
OKEC01000279
[OKEC] human gut metagenome; human gut
990
917
-
Met
CAT
[ENA]
¢þ
>WENV182831008
OKEC01001987
[OKEC] human gut metagenome; human gut
1044
1116
+
Gln
CTG
[ENA]
¢þ
>WENV182831010
OKEC01002108
[OKEC] human gut metagenome; human gut
1050
977
-
Phe
GAA
[ENA]
¢þ
>WENV182830959
OKEC01000279
[OKEC] human gut metagenome; human gut
1104
1029
-
Thr
GGT
[ENA]
¢þ
>WENV182831007
OKEC01001933
[OKEC] human gut metagenome; human gut
1175
1248
+
Thr
CGT
[ENA]
¢þ
>WENV182830955
OKEC01000234
[OKEC] human gut metagenome; human gut
1327
1411
+
Ser
TGA
[ENA]
¢þ
>WENV182831003
OKEC01001415
[OKEC] human gut metagenome; human gut
1392
1476
+
Leu
TAG
[ENA]
¢þ
>WENV182830964
OKEC01000366
[OKEC] human gut metagenome; human gut
1394
1306
-
Ser
CGA
[ENA]
¢þ
>WENV182830999
OKEC01001147
[OKEC] human gut metagenome; human gut
1438
1524
+
Leu
GAG
[ENA]
¢þ
>WENV182830966
OKEC01000399
[OKEC] human gut metagenome; human gut
1461
1546
+
Ser
GGA
[ENA]
¢þ
>WENV182830982
OKEC01000776
[OKEC] human gut metagenome; human gut
1595
1522
-
Arg
ACG
[ENA]
¢þ
>WENV182831002
OKEC01001397
[OKEC] human gut metagenome; human gut
1596
1671
+
Ala
GGC
[ENA]
¢þ
>WENV182830997
OKEC01001117
[OKEC] human gut metagenome; human gut
1651
1577
-
Lys
CTT
[ENA]
¢þ
>WENV182830978
OKEC01000720
[OKEC] human gut metagenome; human gut
1862
1938
+
Leu
TAA
[ENA]
¢þ
>WENV182830926
OKEC01000130
[OKEC] human gut metagenome; human gut
1880
1954
+
fMet
CAT
[ENA]
¢þ
>WENV182830980
OKEC01000769
[OKEC] human gut metagenome; human gut
1981
2053
+
Asn
GTT
[ENA]
¢þ
>WENV182830996
OKEC01001103
[OKEC] human gut metagenome; human gut
2098
2172
+
Leu
CAA
[ENA]
¢þ
>WENV182830995
OKEC01001069
[OKEC] human gut metagenome; human gut
2107
2189
+
Tyr
GTA
[ENA]
¢þ
>WENV182830977
OKEC01000704
[OKEC] human gut metagenome; human gut
2298
2385
+
Leu
CAG
[ENA]
¢þ
>WENV182830985
OKEC01000890
[OKEC] human gut metagenome; human gut
2412
2486
+
Leu
CAA
[ENA]
¢þ
>WENV182830992
OKEC01000951
[OKEC] human gut metagenome; human gut
2532
2444
-
Ser
GGA
[ENA]
¢þ
>WENV182830990
OKEC01000927
[OKEC] human gut metagenome; human gut
2553
2481
-
Val
CAC
[ENA]
¢þ
>WENV182830993
OKEC01000956
[OKEC] human gut metagenome; human gut
2579
2505
-
Leu
TAA
[ENA]
¢þ
>WENV182830979
OKEC01000750
[OKEC] human gut metagenome; human gut
2580
2666
+
Leu
GAG
[ENA]
¢þ
>WENV182830991
OKEC01000933
[OKEC] human gut metagenome; human gut
2585
2660
+
Thr
TGT
[ENA]
¢þ
>WENV182830919
OKEC01000042
[OKEC] human gut metagenome; human gut
2659
2583
-
Pro
CGG
[ENA]
¢þ
>WENV182830981
OKEC01000769
[OKEC] human gut metagenome; human gut
2698
2773
+
Ile2
CAT
[ENA]
¢þ
>WENV182830975
OKEC01000677
[OKEC] human gut metagenome; human gut
2709
2782
+
Glu
TTC
[ENA]
¢þ
>WENV182830976
OKEC01000677
[OKEC] human gut metagenome; human gut
2855
2929
+
Asp
GTC
[ENA]
¢þ
>WENV182830921
OKEC01000062
[OKEC] human gut metagenome; human gut
2928
2839
-
Ser
GCT
[ENA]
¢þ
>WENV182830972
OKEC01000573
[OKEC] human gut metagenome; human gut
2985
2911
-
Pro
GGG
[ENA]
¢þ
>WENV182830983
OKEC01000782
[OKEC] human gut metagenome; human gut
3046
2972
-
Pro
GGG
[ENA]
¢þ
>WENV182830920
OKEC01000062
[OKEC] human gut metagenome; human gut
3165
3078
-
Ser
TGA
[ENA]
¢þ
>WENV182830974
OKEC01000640
[OKEC] human gut metagenome; human gut
3374
3292
-
Leu
TAG
[ENA]
¢þ
>WENV182830973
OKEC01000632
[OKEC] human gut metagenome; human gut
3530
3604
+
Ile2
CAT
[ENA]
¢þ
>WENV182830958
OKEC01000277
[OKEC] human gut metagenome; human gut
3610
3685
+
Val
TAC
[ENA]
¢þ
>WENV182830971
OKEC01000493
[OKEC] human gut metagenome; human gut
3875
3949
+
Trp
CCA
[ENA]
¢þ
>WENV182830954
OKEC01000191
[OKEC] human gut metagenome; human gut
3903
3974
+
Gln
TTG
[ENA]
¢þ
>WENV182830907
OKEC01000026
[OKEC] human gut metagenome; human gut
4174
4099
-
Arg
TCT
[ENA]
¢þ
>WENV182830965
OKEC01000386
[OKEC] human gut metagenome; human gut
4561
4490
-
Arg
CCG
[ENA]
¢þ
>WENV182830969
OKEC01000432
[OKEC] human gut metagenome; human gut
4936
5012
+
Ile
GAT
[ENA]
¢þ
>WENV182830970
OKEC01000432
[OKEC] human gut metagenome; human gut
5022
5095
+
Ala
TGC
[ENA]
¢þ
>WENV182830902
OKEC01000010
[OKEC] human gut metagenome; human gut
5204
5132
-
Thr
GGT
[ENA]
¢þ
>WENV182830962
OKEC01000320
[OKEC] human gut metagenome; human gut
5831
5904
+
Arg
ACG
[ENA]
¢þ
>WENV182830918
OKEC01000035
[OKEC] human gut metagenome; human gut
5950
5875
-
Val
TAC
[ENA]
¢þ
>WENV182830957
OKEC01000266
[OKEC] human gut metagenome; human gut
6114
6206
+
Ser
TGA
[ENA]
¢þ
>WENV182830956
OKEC01000234
[OKEC] human gut metagenome; human gut
6834
6922
+
Ser
GCT
[ENA]
¢þ
>WENV182830953
OKEC01000187
[OKEC] human gut metagenome; human gut
7476
7400
-
Pro
TGG
[ENA]
¢þ
>WENV182830946
OKEC01000174
[OKEC] human gut metagenome; human gut
7527
7454
-
Glu
TTC
[ENA]
¢þ
>WENV182830945
OKEC01000174
[OKEC] human gut metagenome; human gut
7630
7541
-
Ser
GCT
[ENA]
¢þ
>WENV182830952
OKEC01000187
[OKEC] human gut metagenome; human gut
7647
7720
+
Gly
TCC
[ENA]
¢þ
>WENV182830944
OKEC01000174
[OKEC] human gut metagenome; human gut
7713
7640
-
Ile
GAT
[ENA]
¢þ
>WENV182830943
OKEC01000174
[OKEC] human gut metagenome; human gut
7797
7727
-
Gly
TCC
[ENA]
¢þ
>WENV182830942
OKEC01000174
[OKEC] human gut metagenome; human gut
7885
7808
-
Phe
GAA
[ENA]
¢þ
>WENV182830941
OKEC01000174
[OKEC] human gut metagenome; human gut
7964
7889
-
Asp
GTC
[ENA]
¢þ
>WENV182830940
OKEC01000174
[OKEC] human gut metagenome; human gut
8086
8011
-
fMet
CAT
[ENA]
¢þ
>WENV182830939
OKEC01000174
[OKEC] human gut metagenome; human gut
8208
8119
-
Ser
TGA
[ENA]
¢þ
>WENV182830938
OKEC01000174
[OKEC] human gut metagenome; human gut
8293
8220
-
Glu
TTC
[ENA]
¢þ
>WENV182830937
OKEC01000174
[OKEC] human gut metagenome; human gut
8380
8307
-
Ile
GAT
[ENA]
¢þ
>WENV182830936
OKEC01000174
[OKEC] human gut metagenome; human gut
8464
8394
-
Gly
TCC
[ENA]
¢þ
>WENV182830935
OKEC01000174
[OKEC] human gut metagenome; human gut
8542
8466
-
Asp
GTC
[ENA]
¢þ
>WENV182830934
OKEC01000174
[OKEC] human gut metagenome; human gut
8655
8580
-
fMet
CAT
[ENA]
¢þ
>WENV182830933
OKEC01000174
[OKEC] human gut metagenome; human gut
8777
8688
-
Ser
TGA
[ENA]
¢þ
>WENV182830932
OKEC01000174
[OKEC] human gut metagenome; human gut
8885
8810
-
Ile2
CAT
[ENA]
¢þ
>WENV182830931
OKEC01000174
[OKEC] human gut metagenome; human gut
8979
8904
-
Met
CAT
[ENA]
¢þ
>WENV182830930
OKEC01000174
[OKEC] human gut metagenome; human gut
9075
9001
-
Ala
TGC
[ENA]
¢þ
>WENV182830928
OKEC01000152
[OKEC] human gut metagenome; human gut
9233
9160
-
Glu
CTC
[ENA]
¢þ
>WENV182830927
OKEC01000152
[OKEC] human gut metagenome; human gut
9344
9272
-
Gln
CTG
[ENA]
¢þ
>WENV182830904
OKEC01000021
[OKEC] human gut metagenome; human gut
24560
24631
+
Trp
CCA
[ENA]
¢þ
>WENV182830917
OKEC01000032
[OKEC] human gut metagenome; human gut
29883
29806
-
His
GTG
[ENA]
¢þ
>WENV182830903
OKEC01000016
[OKEC] human gut metagenome; human gut
37069
36994
-
Arg
CCT
[ENA]
¢þ
>WENV182830906
OKEC01000022
[OKEC] human gut metagenome; human gut
38774
38701
-
Gly
CCC
[ENA]
¢þ
>WENV182830905
OKEC01000021
[OKEC] human gut metagenome; human gut
46063
46136
+
Ile2
CAT
[ENA]
¢þ
>WENV182830900
OKEC01000003
[OKEC] human gut metagenome; human gut
58030
58103
+
Arg
CCG
[ENA]
¢þ
>WENV182830895
OKEC01000002
[OKEC] human gut metagenome; human gut
210279
210365
+
Leu
GAG
[ENA]
¢þ
>WENV182830896
OKEC01000002
[OKEC] human gut metagenome; human gut
221612
221694
+
Tyr
GTA
[ENA]
¢þ
>WENV182830897
OKEC01000002
[OKEC] human gut metagenome; human gut
221698
221771
+
Trp
CCA
[ENA]
¢þ
>WENV182830898
OKEC01000002
[OKEC] human gut metagenome; human gut
221808
221881
+
His
GTG
[ENA]
¢þ
>WENV182830899
OKEC01000002
[OKEC] human gut metagenome; human gut
221894
221967
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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