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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKEX] human gut metagenome; human gut
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182833978
OKEX01000277
[OKEX] human gut metagenome; human gut
108
198
+
Ser
GGA
[ENA]
¢þ
>WENV182833956
OKEX01000069
[OKEX] human gut metagenome; human gut
130
55
-
Arg
CCT
[ENA]
¢þ
>WENV182833929
OKEX01000020
[OKEX] human gut metagenome; human gut
132
58
-
Leu
TAA
[ENA]
¢þ
>WENV182833941
OKEX01000029
[OKEX] human gut metagenome; human gut
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV182833954
OKEX01000041
[OKEX] human gut metagenome; human gut
143
55
-
Leu
CAG
[ENA]
¢þ
>WENV182833977
OKEX01000273
[OKEX] human gut metagenome; human gut
210
135
-
His
GTG
[ENA]
¢þ
>WENV182833970
OKEX01000183
[OKEX] human gut metagenome; human gut
470
387
-
Leu
CAA
[ENA]
¢þ
>WENV182833969
OKEX01000183
[OKEX] human gut metagenome; human gut
757
684
-
Cys
GCA
[ENA]
¢þ
>WENV182833968
OKEX01000183
[OKEX] human gut metagenome; human gut
834
763
-
Gln
TTG
[ENA]
¢þ
>WENV182833967
OKEX01000183
[OKEX] human gut metagenome; human gut
918
845
-
His
GTG
[ENA]
¢þ
>WENV182833966
OKEX01000183
[OKEX] human gut metagenome; human gut
1005
931
-
Phe
GAA
[ENA]
¢þ
>WENV182833965
OKEX01000183
[OKEX] human gut metagenome; human gut
1090
1015
-
Asp
GTC
[ENA]
¢þ
>WENV182833964
OKEX01000183
[OKEX] human gut metagenome; human gut
1178
1105
-
fMet
CAT
[ENA]
¢þ
>WENV182833951
OKEX01000034
[OKEX] human gut metagenome; human gut
1300
1226
-
Pro
CGG
[ENA]
¢þ
>WENV182833976
OKEX01000272
[OKEX] human gut metagenome; human gut
3369
3457
+
Ser
GGA
[ENA]
¢þ
>WENV182833973
OKEX01000224
[OKEX] human gut metagenome; human gut
3400
3475
+
Val
TAC
[ENA]
¢þ
>WENV182833974
OKEX01000224
[OKEX] human gut metagenome; human gut
3482
3557
+
Thr
TGT
[ENA]
¢þ
>WENV182833975
OKEX01000224
[OKEX] human gut metagenome; human gut
3564
3637
+
Lys
TTT
[ENA]
¢þ
>WENV182833971
OKEX01000202
[OKEX] human gut metagenome; human gut
3905
3979
+
Asn
GTT
[ENA]
¢þ
>WENV182833972
OKEX01000202
[OKEX] human gut metagenome; human gut
3982
4072
+
Ser
GCT
[ENA]
¢þ
>WENV182833924
OKEX01000014
[OKEX] human gut metagenome; human gut
4264
4339
+
Thr
CGT
[ENA]
¢þ
>WENV182833957
OKEX01000072
[OKEX] human gut metagenome; human gut
4715
4623
-
Ser
TGA
[ENA]
¢þ
>WENV182833963
OKEX01000163
[OKEX] human gut metagenome; human gut
4974
4899
-
Lys
CTT
[ENA]
¢þ
>WENV182833958
OKEX01000076
[OKEX] human gut metagenome; human gut
5572
5646
+
Glu
TTC
[ENA]
¢þ
>WENV182833959
OKEX01000076
[OKEX] human gut metagenome; human gut
5652
5724
+
Asp
GTC
[ENA]
¢þ
>WENV182833925
OKEX01000015
[OKEX] human gut metagenome; human gut
5905
5831
-
Pro
GGG
[ENA]
¢þ
>WENV182833960
OKEX01000091
[OKEX] human gut metagenome; human gut
7468
7394
-
Arg
TCT
[ENA]
¢þ
>WENV182833952
OKEX01000035
[OKEX] human gut metagenome; human gut
8235
8164
-
Arg
CCG
[ENA]
¢þ
>WENV182833926
OKEX01000016
[OKEX] human gut metagenome; human gut
8589
8663
+
Ile2
CAT
[ENA]
¢þ
>WENV182833962
OKEX01000108
[OKEX] human gut metagenome; human gut
11462
11548
+
Leu
GAG
[ENA]
¢þ
>WENV182833950
OKEX01000033
[OKEX] human gut metagenome; human gut
12471
12399
-
Val
CAC
[ENA]
¢þ
>WENV182833961
OKEX01000097
[OKEX] human gut metagenome; human gut
12524
12597
+
Asn
GTT
[ENA]
¢þ
>WENV182833944
OKEX01000033
[OKEX] human gut metagenome; human gut
12717
12792
+
Gly
GCC
[ENA]
¢þ
>WENV182833945
OKEX01000033
[OKEX] human gut metagenome; human gut
12840
12912
+
Val
GAC
[ENA]
¢þ
>WENV182833946
OKEX01000033
[OKEX] human gut metagenome; human gut
12950
13025
+
Gly
GCC
[ENA]
¢þ
>WENV182833947
OKEX01000033
[OKEX] human gut metagenome; human gut
13056
13127
+
Cys
GCA
[ENA]
¢þ
>WENV182833948
OKEX01000033
[OKEX] human gut metagenome; human gut
13154
13226
+
Val
GAC
[ENA]
¢þ
>WENV182833949
OKEX01000033
[OKEX] human gut metagenome; human gut
13270
13345
+
Gly
GCC
[ENA]
¢þ
>WENV182833935
OKEX01000024
[OKEX] human gut metagenome; human gut
13300
13373
+
Ala
GGC
[ENA]
¢þ
>WENV182833955
OKEX01000050
[OKEX] human gut metagenome; human gut
14552
14479
-
Thr
TGT
[ENA]
¢þ
>WENV182833928
OKEX01000020
[OKEX] human gut metagenome; human gut
15497
15569
+
Gln
TTG
[ENA]
¢þ
>WENV182833953
OKEX01000041
[OKEX] human gut metagenome; human gut
22029
21956
-
Ala
TGC
[ENA]
¢þ
>WENV182833927
OKEX01000016
[OKEX] human gut metagenome; human gut
23616
23691
+
Val
TAC
[ENA]
¢þ
>WENV182833910
OKEX01000001
[OKEX] human gut metagenome; human gut
26681
26775
+
SeC
TCA
[ENA]
¢þ
>WENV182833937
OKEX01000027
[OKEX] human gut metagenome; human gut
28172
28254
+
Tyr
GTA
[ENA]
¢þ
>WENV182833942
OKEX01000032
[OKEX] human gut metagenome; human gut
28439
28525
+
Leu
GAG
[ENA]
¢þ
>WENV182833943
OKEX01000032
[OKEX] human gut metagenome; human gut
28547
28620
+
Gly
TCC
[ENA]
¢þ
>WENV182833923
OKEX01000012
[OKEX] human gut metagenome; human gut
31619
31545
-
Pro
TGG
[ENA]
¢þ
>WENV182833921
OKEX01000012
[OKEX] human gut metagenome; human gut
32698
32772
+
Gly
TCC
[ENA]
¢þ
>WENV182833938
OKEX01000027
[OKEX] human gut metagenome; human gut
34080
34155
+
Thr
GGT
[ENA]
¢þ
>WENV182833939
OKEX01000027
[OKEX] human gut metagenome; human gut
34194
34267
+
Met
CAT
[ENA]
¢þ
>WENV182833940
OKEX01000027
[OKEX] human gut metagenome; human gut
34406
34479
+
Trp
CCA
[ENA]
¢þ
>WENV182833930
OKEX01000023
[OKEX] human gut metagenome; human gut
35194
35267
+
Lys
TTT
[ENA]
¢þ
>WENV182833931
OKEX01000023
[OKEX] human gut metagenome; human gut
35713
35788
+
Glu
TTC
[ENA]
¢þ
>WENV182833932
OKEX01000023
[OKEX] human gut metagenome; human gut
35824
35898
+
Asp
GTC
[ENA]
¢þ
>WENV182833933
OKEX01000023
[OKEX] human gut metagenome; human gut
36355
36429
+
Asp
GTC
[ENA]
¢þ
>WENV182833934
OKEX01000023
[OKEX] human gut metagenome; human gut
36448
36521
+
Phe
GAA
[ENA]
¢þ
>WENV182833936
OKEX01000024
[OKEX] human gut metagenome; human gut
37907
37989
+
Leu
TAG
[ENA]
¢þ
>WENV182833920
OKEX01000011
[OKEX] human gut metagenome; human gut
42515
42589
+
Leu
CAA
[ENA]
¢þ
>WENV182833922
OKEX01000012
[OKEX] human gut metagenome; human gut
63260
63335
+
Arg
TCT
[ENA]
¢þ
>WENV182833919
OKEX01000008
[OKEX] human gut metagenome; human gut
68073
68149
+
fMet
CAT
[ENA]
¢þ
>WENV182833915
OKEX01000006
[OKEX] human gut metagenome; human gut
82466
82550
+
Ser
TGA
[ENA]
¢þ
>WENV182833916
OKEX01000006
[OKEX] human gut metagenome; human gut
87993
88081
+
Ser
GCT
[ENA]
¢þ
>WENV182833917
OKEX01000006
[OKEX] human gut metagenome; human gut
94992
95065
+
Arg
ACG
[ENA]
¢þ
>WENV182833918
OKEX01000006
[OKEX] human gut metagenome; human gut
99794
99882
+
Ser
CGA
[ENA]
¢þ
>WENV182833914
OKEX01000002
[OKEX] human gut metagenome; human gut
101456
101383
-
Gly
CCC
[ENA]
¢þ
>WENV182833913
OKEX01000001
[OKEX] human gut metagenome; human gut
123416
123342
-
Arg
CCG
[ENA]
¢þ
>WENV182833911
OKEX01000001
[OKEX] human gut metagenome; human gut
229292
229364
+
Gln
CTG
[ENA]
¢þ
>WENV182833912
OKEX01000001
[OKEX] human gut metagenome; human gut
229403
229476
+
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK