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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKEY] human gut metagenome; human gut
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182834032
OKEY01000573
[OKEY] human gut metagenome; human gut
130
57
-
Trp
CCA
[ENA]
¢þ
>WENV182834012
OKEY01000147
[OKEY] human gut metagenome; human gut
131
56
-
Arg
CCT
[ENA]
¢þ
>WENV182834024
OKEY01000266
[OKEY] human gut metagenome; human gut
132
57
-
Arg
TCT
[ENA]
¢þ
>WENV182834029
OKEY01000528
[OKEY] human gut metagenome; human gut
143
57
-
Leu
GAG
[ENA]
¢þ
>WENV182833985
OKEY01000021
[OKEY] human gut metagenome; human gut
144
56
-
Leu
CAG
[ENA]
¢þ
>WENV182834025
OKEY01000328
[OKEY] human gut metagenome; human gut
180
107
-
Asn
GTT
[ENA]
¢þ
>WENV182834022
OKEY01000234
[OKEY] human gut metagenome; human gut
213
138
-
His
GTG
[ENA]
¢þ
>WENV182834027
OKEY01000383
[OKEY] human gut metagenome; human gut
222
298
+
fMet
CAT
[ENA]
¢þ
>WENV182834023
OKEY01000257
[OKEY] human gut metagenome; human gut
273
346
+
Gly
CCC
[ENA]
¢þ
>WENV182834031
OKEY01000573
[OKEY] human gut metagenome; human gut
342
269
-
Met
CAT
[ENA]
¢þ
>WENV182834030
OKEY01000573
[OKEY] human gut metagenome; human gut
456
381
-
Thr
GGT
[ENA]
¢þ
>WENV182833986
OKEY01000025
[OKEY] human gut metagenome; human gut
468
542
+
Ile2
CAT
[ENA]
¢þ
>WENV182834034
OKEY01000637
[OKEY] human gut metagenome; human gut
532
442
-
Ser
GCT
[ENA]
¢þ
>WENV182834033
OKEY01000637
[OKEY] human gut metagenome; human gut
609
535
-
Asn
GTT
[ENA]
¢þ
>WENV182834028
OKEY01000397
[OKEY] human gut metagenome; human gut
705
779
+
Pro
GGG
[ENA]
¢þ
>WENV182834020
OKEY01000212
[OKEY] human gut metagenome; human gut
1143
1215
+
Gln
CTG
[ENA]
¢þ
>WENV182834021
OKEY01000212
[OKEY] human gut metagenome; human gut
1254
1329
+
Glu
CTC
[ENA]
¢þ
>WENV182834010
OKEY01000140
[OKEY] human gut metagenome; human gut
1300
1226
-
Pro
CGG
[ENA]
¢þ
>WENV182834018
OKEY01000166
[OKEY] human gut metagenome; human gut
1321
1246
-
Val
TAC
[ENA]
¢þ
>WENV182833979
OKEY01000007
[OKEY] human gut metagenome; human gut
1559
1643
+
Ser
TGA
[ENA]
¢þ
>WENV182834026
OKEY01000375
[OKEY] human gut metagenome; human gut
1903
1985
+
Leu
TAG
[ENA]
¢þ
>WENV182833992
OKEY01000040
[OKEY] human gut metagenome; human gut
2728
2803
+
Thr
CGT
[ENA]
¢þ
>WENV182834013
OKEY01000154
[OKEY] human gut metagenome; human gut
2825
2899
+
Leu
CAA
[ENA]
¢þ
>WENV182833996
OKEY01000053
[OKEY] human gut metagenome; human gut
3250
3338
+
Ser
GGA
[ENA]
¢þ
>WENV182834000
OKEY01000126
[OKEY] human gut metagenome; human gut
3862
3937
+
Val
TAC
[ENA]
¢þ
>WENV182834001
OKEY01000126
[OKEY] human gut metagenome; human gut
3944
4019
+
Thr
TGT
[ENA]
¢þ
>WENV182834019
OKEY01000176
[OKEY] human gut metagenome; human gut
3966
3878
-
Ser
CGA
[ENA]
¢þ
>WENV182834002
OKEY01000126
[OKEY] human gut metagenome; human gut
4024
4107
+
Tyr
GTA
[ENA]
¢þ
>WENV182834003
OKEY01000126
[OKEY] human gut metagenome; human gut
4112
4186
+
Gln
TTG
[ENA]
¢þ
>WENV182834004
OKEY01000126
[OKEY] human gut metagenome; human gut
4190
4262
+
Lys
TTT
[ENA]
¢þ
>WENV182834005
OKEY01000126
[OKEY] human gut metagenome; human gut
4281
4355
+
Gly
GCC
[ENA]
¢þ
>WENV182834006
OKEY01000126
[OKEY] human gut metagenome; human gut
4367
4455
+
Leu
TAA
[ENA]
¢þ
>WENV182834007
OKEY01000126
[OKEY] human gut metagenome; human gut
4468
4542
+
Arg
ACG
[ENA]
¢þ
>WENV182834017
OKEY01000158
[OKEY] human gut metagenome; human gut
4499
4427
-
Val
CAC
[ENA]
¢þ
>WENV182834008
OKEY01000126
[OKEY] human gut metagenome; human gut
4551
4624
+
Pro
TGG
[ENA]
¢þ
>WENV182834009
OKEY01000126
[OKEY] human gut metagenome; human gut
4641
4716
+
Ala
TGC
[ENA]
¢þ
>WENV182833997
OKEY01000096
[OKEY] human gut metagenome; human gut
4659
4587
-
Gln
TTG
[ENA]
¢þ
>WENV182834014
OKEY01000158
[OKEY] human gut metagenome; human gut
4745
4820
+
Gly
GCC
[ENA]
¢þ
>WENV182834015
OKEY01000158
[OKEY] human gut metagenome; human gut
4851
4922
+
Cys
GCA
[ENA]
¢þ
>WENV182834016
OKEY01000158
[OKEY] human gut metagenome; human gut
4949
5021
+
Val
GAC
[ENA]
¢þ
>WENV182833998
OKEY01000099
[OKEY] human gut metagenome; human gut
4976
4901
-
Lys
CTT
[ENA]
¢þ
>WENV182834011
OKEY01000142
[OKEY] human gut metagenome; human gut
4982
5076
+
SeC
TCA
[ENA]
¢þ
>WENV182833987
OKEY01000035
[OKEY] human gut metagenome; human gut
5644
5717
+
Lys
TTT
[ENA]
¢þ
>WENV182833994
OKEY01000045
[OKEY] human gut metagenome; human gut
6001
5927
-
Pro
TGG
[ENA]
¢þ
>WENV182833999
OKEY01000109
[OKEY] human gut metagenome; human gut
6126
6208
+
Tyr
GTA
[ENA]
¢þ
>WENV182833988
OKEY01000035
[OKEY] human gut metagenome; human gut
6163
6238
+
Glu
TTC
[ENA]
¢þ
>WENV182833989
OKEY01000035
[OKEY] human gut metagenome; human gut
6274
6348
+
Asp
GTC
[ENA]
¢þ
>WENV182833990
OKEY01000035
[OKEY] human gut metagenome; human gut
6367
6440
+
Phe
GAA
[ENA]
¢þ
>WENV182833995
OKEY01000047
[OKEY] human gut metagenome; human gut
6481
6408
-
Ala
GGC
[ENA]
¢þ
>WENV182833993
OKEY01000045
[OKEY] human gut metagenome; human gut
7080
7154
+
Gly
TCC
[ENA]
¢þ
>WENV182833980
OKEY01000007
[OKEY] human gut metagenome; human gut
7086
7174
+
Ser
GCT
[ENA]
¢þ
>WENV182833991
OKEY01000037
[OKEY] human gut metagenome; human gut
7374
7301
-
Thr
TGT
[ENA]
¢þ
>WENV182833982
OKEY01000013
[OKEY] human gut metagenome; human gut
8825
8901
+
Ile
GAT
[ENA]
¢þ
>WENV182833983
OKEY01000013
[OKEY] human gut metagenome; human gut
8911
8984
+
Ala
TGC
[ENA]
¢þ
>WENV182833984
OKEY01000017
[OKEY] human gut metagenome; human gut
11958
12032
+
Arg
CCG
[ENA]
¢þ
>WENV182833981
OKEY01000007
[OKEY] human gut metagenome; human gut
14085
14158
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK