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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKFB] human gut metagenome; human gut
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182834376
OKFB01003837
[OKFB] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV182834369
OKFB01003776
[OKFB] human gut metagenome; human gut
64
153
+
Ser
TGA
[ENA]
¢þ
>WENV182834347
OKFB01001215
[OKFB] human gut metagenome; human gut
149
75
-
Ala
TGC
[ENA]
¢þ
>WENV182834325
OKFB01000270
[OKFB] human gut metagenome; human gut
171
95
-
fMet
CAT
[ENA]
¢þ
>WENV182834362
OKFB01003002
[OKFB] human gut metagenome; human gut
171
96
-
Ile2
CAT
[ENA]
¢þ
>WENV182834377
OKFB01003837
[OKFB] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV182834370
OKFB01003776
[OKFB] human gut metagenome; human gut
186
261
+
fMet
CAT
[ENA]
¢þ
>WENV182834363
OKFB01003145
[OKFB] human gut metagenome; human gut
205
280
+
Thr
CGT
[ENA]
¢þ
>WENV182834346
OKFB01001215
[OKFB] human gut metagenome; human gut
235
162
-
Pro
TGG
[ENA]
¢þ
>WENV182834367
OKFB01003516
[OKFB] human gut metagenome; human gut
252
180
-
Thr
GGT
[ENA]
¢þ
>WENV182834349
OKFB01001427
[OKFB] human gut metagenome; human gut
255
182
-
Arg
CCG
[ENA]
¢þ
>WENV182834336
OKFB01000703
[OKFB] human gut metagenome; human gut
258
182
-
Pro
CGG
[ENA]
¢þ
>WENV182834378
OKFB01003837
[OKFB] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV182834351
OKFB01001482
[OKFB] human gut metagenome; human gut
286
210
-
Val
GAC
[ENA]
¢þ
>WENV182834371
OKFB01003776
[OKFB] human gut metagenome; human gut
308
383
+
Asp
GTC
[ENA]
¢þ
>WENV182834345
OKFB01001215
[OKFB] human gut metagenome; human gut
320
247
-
Arg
ACG
[ENA]
¢þ
>WENV182834379
OKFB01003837
[OKFB] human gut metagenome; human gut
348
421
+
Trp
CCA
[ENA]
¢þ
>WENV182834350
OKFB01001482
[OKFB] human gut metagenome; human gut
367
291
-
Val
GAC
[ENA]
¢þ
>WENV182834372
OKFB01003776
[OKFB] human gut metagenome; human gut
387
464
+
Phe
GAA
[ENA]
¢þ
>WENV182834366
OKFB01003455
[OKFB] human gut metagenome; human gut
416
341
-
Ala
GGC
[ENA]
¢þ
>WENV182834344
OKFB01001215
[OKFB] human gut metagenome; human gut
420
335
-
Leu
TAA
[ENA]
¢þ
>WENV182834380
OKFB01003837
[OKFB] human gut metagenome; human gut
458
531
+
His
GTG
[ENA]
¢þ
>WENV182834365
OKFB01003294
[OKFB] human gut metagenome; human gut
471
558
+
Ser
GGA
[ENA]
¢þ
>WENV182834373
OKFB01003776
[OKFB] human gut metagenome; human gut
475
545
+
Gly
TCC
[ENA]
¢þ
>WENV182834343
OKFB01001215
[OKFB] human gut metagenome; human gut
507
436
-
Gly
GCC
[ENA]
¢þ
>WENV182834356
OKFB01002025
[OKFB] human gut metagenome; human gut
520
592
+
Arg
CCT
[ENA]
¢þ
>WENV182834381
OKFB01003837
[OKFB] human gut metagenome; human gut
544
617
+
Gln
TTG
[ENA]
¢þ
>WENV182834374
OKFB01003776
[OKFB] human gut metagenome; human gut
554
629
+
Ile
GAT
[ENA]
¢þ
>WENV182834368
OKFB01003764
[OKFB] human gut metagenome; human gut
567
653
+
Leu
GAG
[ENA]
¢þ
>WENV182834342
OKFB01001215
[OKFB] human gut metagenome; human gut
587
512
-
Thr
TGT
[ENA]
¢þ
>WENV182834361
OKFB01002736
[OKFB] human gut metagenome; human gut
617
544
-
Glu
TTC
[ENA]
¢þ
>WENV182834375
OKFB01003776
[OKFB] human gut metagenome; human gut
642
715
+
Glu
TTC
[ENA]
¢þ
>WENV182834357
OKFB01002050
[OKFB] human gut metagenome; human gut
657
733
+
Asp
GTC
[ENA]
¢þ
>WENV182834341
OKFB01001215
[OKFB] human gut metagenome; human gut
676
593
-
Leu
TAG
[ENA]
¢þ
>WENV182834340
OKFB01001215
[OKFB] human gut metagenome; human gut
765
691
-
Lys
TTT
[ENA]
¢þ
>WENV182834358
OKFB01002180
[OKFB] human gut metagenome; human gut
793
864
+
Trp
CCA
[ENA]
¢þ
>WENV182834364
OKFB01003209
[OKFB] human gut metagenome; human gut
843
758
-
Leu
CAA
[ENA]
¢þ
>WENV182834339
OKFB01001215
[OKFB] human gut metagenome; human gut
844
770
-
Val
TAC
[ENA]
¢þ
>WENV182834334
OKFB01000682
[OKFB] human gut metagenome; human gut
852
768
-
Tyr
GTA
[ENA]
¢þ
>WENV182834338
OKFB01000868
[OKFB] human gut metagenome; human gut
866
793
-
Gly
CCC
[ENA]
¢þ
>WENV182834331
OKFB01000497
[OKFB] human gut metagenome; human gut
892
984
+
Ser
GCT
[ENA]
¢þ
>WENV182834333
OKFB01000682
[OKFB] human gut metagenome; human gut
938
863
-
Thr
TGT
[ENA]
¢þ
>WENV182834337
OKFB01000839
[OKFB] human gut metagenome; human gut
984
909
-
Lys
TTT
[ENA]
¢þ
>WENV182834332
OKFB01000497
[OKFB] human gut metagenome; human gut
989
1065
+
Arg
ACG
[ENA]
¢þ
>WENV182834360
OKFB01002656
[OKFB] human gut metagenome; human gut
1115
1040
-
Asn
GTT
[ENA]
¢þ
>WENV182834359
OKFB01002234
[OKFB] human gut metagenome; human gut
1142
1217
+
Val
TAC
[ENA]
¢þ
>WENV182834353
OKFB01001759
[OKFB] human gut metagenome; human gut
1242
1318
+
Met
CAT
[ENA]
¢þ
>WENV182834354
OKFB01001759
[OKFB] human gut metagenome; human gut
1327
1411
+
Leu
TAG
[ENA]
¢þ
>WENV182834323
OKFB01000165
[OKFB] human gut metagenome; human gut
1442
1356
-
Leu
CAG
[ENA]
¢þ
>WENV182834352
OKFB01001755
[OKFB] human gut metagenome; human gut
1445
1520
+
Phe
GAA
[ENA]
¢þ
>WENV182834355
OKFB01001759
[OKFB] human gut metagenome; human gut
1446
1520
+
Gln
TTG
[ENA]
¢þ
>WENV182834348
OKFB01001321
[OKFB] human gut metagenome; human gut
1468
1544
+
Arg
TCT
[ENA]
¢þ
>WENV182834324
OKFB01000270
[OKFB] human gut metagenome; human gut
2061
1975
-
Leu
GAG
[ENA]
¢þ
>WENV182834330
OKFB01000446
[OKFB] human gut metagenome; human gut
2120
2192
+
Thr
CGT
[ENA]
¢þ
>WENV182834335
OKFB01000689
[OKFB] human gut metagenome; human gut
2299
2375
+
Pro
GGG
[ENA]
¢þ
>WENV182834326
OKFB01000403
[OKFB] human gut metagenome; human gut
2483
2558
+
Gly
GCC
[ENA]
¢þ
>WENV182834327
OKFB01000403
[OKFB] human gut metagenome; human gut
2597
2670
+
Cys
GCA
[ENA]
¢þ
>WENV182834328
OKFB01000403
[OKFB] human gut metagenome; human gut
2684
2770
+
Leu
TAA
[ENA]
¢þ
>WENV182834329
OKFB01000424
[OKFB] human gut metagenome; human gut
3270
3364
+
SeC
TCA
[ENA]
¢þ
>WENV182834322
OKFB01000151
[OKFB] human gut metagenome; human gut
4788
4714
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK