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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFE] human gut metagenome; human gut
HIT:
135 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182834611
OKFE01000162
[OKFE] human gut metagenome; human gut
3
77
+
Gln
CTG
[ENA]
¢þ
>WENV182834612
OKFE01000178
[OKFE] human gut metagenome; human gut
57
132
+
Lys
TTT
[ENA]
¢þ
>WENV182834575
OKFE01000053
[OKFE] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182834636
OKFE01000630
[OKFE] human gut metagenome; human gut
61
136
+
Phe
GAA
[ENA]
¢þ
>WENV182834577
OKFE01000058
[OKFE] human gut metagenome; human gut
64
139
+
Trp
CCA
[ENA]
¢þ
>WENV182834592
OKFE01000102
[OKFE] human gut metagenome; human gut
77
1
-
Val
GAC
[ENA]
¢þ
>WENV182834597
OKFE01000133
[OKFE] human gut metagenome; human gut
77
147
+
Cys
GCA
[ENA]
¢þ
>WENV182834647
OKFE01000954
[OKFE] human gut metagenome; human gut
77
152
+
Phe
GAA
[ENA]
¢þ
>WENV182834652
OKFE01001028
[OKFE] human gut metagenome; human gut
79
4
-
Val
TAC
[ENA]
¢þ
>WENV182834637
OKFE01000630
[OKFE] human gut metagenome; human gut
142
216
+
Gly
GCC
[ENA]
¢þ
>WENV182834591
OKFE01000102
[OKFE] human gut metagenome; human gut
158
82
-
Val
GAC
[ENA]
¢þ
>WENV182834598
OKFE01000133
[OKFE] human gut metagenome; human gut
160
245
+
Leu
CAA
[ENA]
¢þ
>WENV182834601
OKFE01000135
[OKFE] human gut metagenome; human gut
164
90
-
Gln
TTG
[ENA]
¢þ
>WENV182834648
OKFE01000954
[OKFE] human gut metagenome; human gut
165
250
+
Leu
GAG
[ENA]
¢þ
>WENV182834673
OKFE01003134
[OKFE] human gut metagenome; human gut
193
117
-
Arg
ACG
[ENA]
¢þ
>WENV182834651
OKFE01001028
[OKFE] human gut metagenome; human gut
201
126
-
Val
TAC
[ENA]
¢þ
>WENV182834638
OKFE01000630
[OKFE] human gut metagenome; human gut
224
298
+
Cys
GCA
[ENA]
¢þ
>WENV182834657
OKFE01001278
[OKFE] human gut metagenome; human gut
235
145
-
Ser
GCT
[ENA]
¢þ
>WENV182834671
OKFE01003088
[OKFE] human gut metagenome; human gut
271
345
+
Arg
CCG
[ENA]
¢þ
>WENV182834600
OKFE01000135
[OKFE] human gut metagenome; human gut
272
188
-
Leu
TAG
[ENA]
¢þ
>WENV182834672
OKFE01003134
[OKFE] human gut metagenome; human gut
289
197
-
Ser
GCT
[ENA]
¢þ
>WENV182834670
OKFE01002920
[OKFE] human gut metagenome; human gut
304
229
-
Thr
CGT
[ENA]
¢þ
>WENV182834639
OKFE01000630
[OKFE] human gut metagenome; human gut
314
402
+
Leu
TAA
[ENA]
¢þ
>WENV182834669
OKFE01002918
[OKFE] human gut metagenome; human gut
337
247
-
Ser
CGA
[ENA]
¢þ
>WENV182834668
OKFE01002630
[OKFE] human gut metagenome; human gut
339
264
-
Val
TAC
[ENA]
¢þ
>WENV182834599
OKFE01000135
[OKFE] human gut metagenome; human gut
357
281
-
Met
CAT
[ENA]
¢þ
>WENV182834634
OKFE01000550
[OKFE] human gut metagenome; human gut
362
288
-
Ile2
CAT
[ENA]
¢þ
>WENV182834665
OKFE01002553
[OKFE] human gut metagenome; human gut
416
499
+
Leu
CAA
[ENA]
¢þ
>WENV182834667
OKFE01002630
[OKFE] human gut metagenome; human gut
419
345
-
Glu
TTC
[ENA]
¢þ
>WENV182834656
OKFE01001168
[OKFE] human gut metagenome; human gut
467
392
-
Lys
TTT
[ENA]
¢þ
>WENV182834666
OKFE01002630
[OKFE] human gut metagenome; human gut
499
424
-
Asn
GTT
[ENA]
¢þ
>WENV182834655
OKFE01001168
[OKFE] human gut metagenome; human gut
548
474
-
Gln
TTG
[ENA]
¢þ
>WENV182834674
OKFE01003602
[OKFE] human gut metagenome; human gut
575
649
+
Asn
GTT
[ENA]
¢þ
>WENV182834654
OKFE01001168
[OKFE] human gut metagenome; human gut
627
552
-
His
GTG
[ENA]
¢þ
>WENV182834663
OKFE01002293
[OKFE] human gut metagenome; human gut
769
695
-
Arg
CCT
[ENA]
¢þ
>WENV182834621
OKFE01000358
[OKFE] human gut metagenome; human gut
885
960
+
Thr
TGT
[ENA]
¢þ
>WENV182834570
OKFE01000030
[OKFE] human gut metagenome; human gut
921
848
-
Arg
CCG
[ENA]
¢þ
>WENV182834628
OKFE01000412
[OKFE] human gut metagenome; human gut
969
893
-
Arg
TCT
[ENA]
¢þ
>WENV182834622
OKFE01000358
[OKFE] human gut metagenome; human gut
969
1053
+
Tyr
GTA
[ENA]
¢þ
>WENV182834616
OKFE01000325
[OKFE] human gut metagenome; human gut
1020
1095
+
Asn
GTT
[ENA]
¢þ
>WENV182834664
OKFE01002422
[OKFE] human gut metagenome; human gut
1038
963
-
Lys
CTT
[ENA]
¢þ
>WENV182834623
OKFE01000358
[OKFE] human gut metagenome; human gut
1059
1134
+
fMet
CAT
[ENA]
¢þ
>WENV182834660
OKFE01001537
[OKFE] human gut metagenome; human gut
1085
1173
+
Ser
TGA
[ENA]
¢þ
>WENV182834624
OKFE01000358
[OKFE] human gut metagenome; human gut
1147
1222
+
Thr
GGT
[ENA]
¢þ
>WENV182834620
OKFE01000334
[OKFE] human gut metagenome; human gut
1212
1136
-
Arg
ACG
[ENA]
¢þ
>WENV182834662
OKFE01001737
[OKFE] human gut metagenome; human gut
1223
1136
-
Ser
TGA
[ENA]
¢þ
>WENV182834625
OKFE01000358
[OKFE] human gut metagenome; human gut
1232
1308
+
Met
CAT
[ENA]
¢þ
>WENV182834627
OKFE01000412
[OKFE] human gut metagenome; human gut
1282
1209
-
Gly
TCC
[ENA]
¢þ
>WENV182834633
OKFE01000540
[OKFE] human gut metagenome; human gut
1308
1235
-
Gly
CCC
[ENA]
¢þ
>WENV182834626
OKFE01000412
[OKFE] human gut metagenome; human gut
1368
1292
-
Pro
TGG
[ENA]
¢þ
>WENV182834661
OKFE01001693
[OKFE] human gut metagenome; human gut
1391
1474
+
Leu
CAG
[ENA]
¢þ
>WENV182834619
OKFE01000334
[OKFE] human gut metagenome; human gut
1411
1336
-
Trp
CCA
[ENA]
¢þ
>WENV182834602
OKFE01000137
[OKFE] human gut metagenome; human gut
1447
1537
+
Ser
GGA
[ENA]
¢þ
>WENV182834603
OKFE01000137
[OKFE] human gut metagenome; human gut
1553
1626
+
Glu
TTC
[ENA]
¢þ
>WENV182834645
OKFE01000796
[OKFE] human gut metagenome; human gut
1626
1710
+
Leu
TAG
[ENA]
¢þ
>WENV182834593
OKFE01000105
[OKFE] human gut metagenome; human gut
1632
1545
-
Ser
GGA
[ENA]
¢þ
>WENV182834604
OKFE01000137
[OKFE] human gut metagenome; human gut
1638
1727
+
Ser
TGA
[ENA]
¢þ
>WENV182834659
OKFE01001459
[OKFE] human gut metagenome; human gut
1679
1591
-
Ser
CGA
[ENA]
¢þ
>WENV182834605
OKFE01000137
[OKFE] human gut metagenome; human gut
1760
1835
+
fMet
CAT
[ENA]
¢þ
>WENV182834653
OKFE01001078
[OKFE] human gut metagenome; human gut
1787
1701
-
Leu
GAG
[ENA]
¢þ
>WENV182834606
OKFE01000137
[OKFE] human gut metagenome; human gut
1873
1949
+
Asp
GTC
[ENA]
¢þ
>WENV182834607
OKFE01000137
[OKFE] human gut metagenome; human gut
1951
2021
+
Gly
TCC
[ENA]
¢þ
>WENV182834608
OKFE01000137
[OKFE] human gut metagenome; human gut
2035
2108
+
Ile
GAT
[ENA]
¢þ
>WENV182834614
OKFE01000270
[OKFE] human gut metagenome; human gut
2101
2176
+
Ile2
CAT
[ENA]
¢þ
>WENV182834609
OKFE01000137
[OKFE] human gut metagenome; human gut
2118
2207
+
Ser
GCT
[ENA]
¢þ
>WENV182834658
OKFE01001411
[OKFE] human gut metagenome; human gut
2220
2145
-
Glu
TTC
[ENA]
¢þ
>WENV182834646
OKFE01000849
[OKFE] human gut metagenome; human gut
2220
2145
-
Ala
GGC
[ENA]
¢þ
>WENV182834610
OKFE01000137
[OKFE] human gut metagenome; human gut
2221
2294
+
Glu
TTC
[ENA]
¢þ
>WENV182834632
OKFE01000535
[OKFE] human gut metagenome; human gut
2370
2295
-
Phe
GAA
[ENA]
¢þ
>WENV182834640
OKFE01000671
[OKFE] human gut metagenome; human gut
2415
2491
+
Pro
CGG
[ENA]
¢þ
>WENV182834615
OKFE01000310
[OKFE] human gut metagenome; human gut
2696
2623
-
Gly
CCC
[ENA]
¢þ
>WENV182834635
OKFE01000561
[OKFE] human gut metagenome; human gut
2859
2765
-
SeC
TCA
[ENA]
¢þ
>WENV182834649
OKFE01001028
[OKFE] human gut metagenome; human gut
2900
2975
+
Ala
GGC
[ENA]
¢þ
>WENV182834650
OKFE01001028
[OKFE] human gut metagenome; human gut
3015
3090
+
Ala
GGC
[ENA]
¢þ
>WENV182834641
OKFE01000672
[OKFE] human gut metagenome; human gut
3510
3585
+
Thr
TGT
[ENA]
¢þ
>WENV182834642
OKFE01000672
[OKFE] human gut metagenome; human gut
3594
3678
+
Tyr
GTA
[ENA]
¢þ
>WENV182834643
OKFE01000672
[OKFE] human gut metagenome; human gut
3795
3869
+
Gly
TCC
[ENA]
¢þ
>WENV182834644
OKFE01000672
[OKFE] human gut metagenome; human gut
3876
3951
+
Thr
GGT
[ENA]
¢þ
>WENV182834631
OKFE01000503
[OKFE] human gut metagenome; human gut
4007
3931
-
Arg
TCT
[ENA]
¢þ
>WENV182834561
OKFE01000019
[OKFE] human gut metagenome; human gut
4484
4409
-
Arg
TCT
[ENA]
¢þ
>WENV182834613
OKFE01000228
[OKFE] human gut metagenome; human gut
4593
4677
+
Leu
CAA
[ENA]
¢þ
>WENV182834630
OKFE01000458
[OKFE] human gut metagenome; human gut
4848
4773
-
Asn
GTT
[ENA]
¢þ
>WENV182834629
OKFE01000457
[OKFE] human gut metagenome; human gut
5418
5343
-
Trp
CCA
[ENA]
¢þ
>WENV182834582
OKFE01000066
[OKFE] human gut metagenome; human gut
5685
5611
-
Arg
CCT
[ENA]
¢þ
>WENV182834596
OKFE01000132
[OKFE] human gut metagenome; human gut
5727
5643
-
Leu
CAA
[ENA]
¢þ
>WENV182834618
OKFE01000334
[OKFE] human gut metagenome; human gut
6568
6493
-
Ala
TGC
[ENA]
¢þ
>WENV182834617
OKFE01000334
[OKFE] human gut metagenome; human gut
6808
6732
-
Ile
GAT
[ENA]
¢þ
>WENV182834595
OKFE01000129
[OKFE] human gut metagenome; human gut
7948
8042
+
SeC
TCA
[ENA]
¢þ
>WENV182834566
OKFE01000026
[OKFE] human gut metagenome; human gut
8342
8417
+
Phe
GAA
[ENA]
¢þ
>WENV182834587
OKFE01000083
[OKFE] human gut metagenome; human gut
9325
9250
-
Asn
GTT
[ENA]
¢þ
>WENV182834586
OKFE01000083
[OKFE] human gut metagenome; human gut
10317
10406
+
Ser
CGA
[ENA]
¢þ
>WENV182834584
OKFE01000082
[OKFE] human gut metagenome; human gut
11170
11252
+
Tyr
GTA
[ENA]
¢þ
>WENV182834585
OKFE01000082
[OKFE] human gut metagenome; human gut
11260
11333
+
Gln
TTG
[ENA]
¢þ
>WENV182834574
OKFE01000049
[OKFE] human gut metagenome; human gut
11422
11346
-
fMet
CAT
[ENA]
¢þ
>WENV182834573
OKFE01000049
[OKFE] human gut metagenome; human gut
11532
11456
-
fMet
CAT
[ENA]
¢þ
>WENV182834572
OKFE01000049
[OKFE] human gut metagenome; human gut
11642
11566
-
fMet
CAT
[ENA]
¢þ
>WENV182834594
OKFE01000110
[OKFE] human gut metagenome; human gut
15617
15690
+
Thr
CGT
[ENA]
¢þ
>WENV182834590
OKFE01000101
[OKFE] human gut metagenome; human gut
16198
16122
-
fMet
CAT
[ENA]
¢þ
>WENV182834564
OKFE01000021
[OKFE] human gut metagenome; human gut
16866
16791
-
Asn
GTT
[ENA]
¢þ
>WENV182834567
OKFE01000027
[OKFE] human gut metagenome; human gut
19035
19121
+
Leu
GAG
[ENA]
¢þ
>WENV182834563
OKFE01000021
[OKFE] human gut metagenome; human gut
19275
19200
-
Asn
GTT
[ENA]
¢þ
>WENV182834589
OKFE01000101
[OKFE] human gut metagenome; human gut
20064
19978
-
Leu
GAG
[ENA]
¢þ
>WENV182834562
OKFE01000021
[OKFE] human gut metagenome; human gut
21024
21099
+
Asn
GTT
[ENA]
¢þ
>WENV182834588
OKFE01000088
[OKFE] human gut metagenome; human gut
22636
22560
-
Asp
GTC
[ENA]
¢þ
>WENV182834583
OKFE01000077
[OKFE] human gut metagenome; human gut
29701
29626
-
Ile2
CAT
[ENA]
¢þ
>WENV182834541
OKFE01000003
[OKFE] human gut metagenome; human gut
30213
30285
+
Thr
GGT
[ENA]
¢þ
>WENV182834576
OKFE01000053
[OKFE] human gut metagenome; human gut
34294
34383
+
Ser
CGA
[ENA]
¢þ
>WENV182834578
OKFE01000058
[OKFE] human gut metagenome; human gut
34608
34684
+
Arg
CCG
[ENA]
¢þ
>WENV182834579
OKFE01000058
[OKFE] human gut metagenome; human gut
34743
34818
+
His
GTG
[ENA]
¢þ
>WENV182834580
OKFE01000058
[OKFE] human gut metagenome; human gut
34839
34925
+
Leu
CAG
[ENA]
¢þ
>WENV182834581
OKFE01000058
[OKFE] human gut metagenome; human gut
34968
35044
+
Pro
TGG
[ENA]
¢þ
>WENV182834558
OKFE01000014
[OKFE] human gut metagenome; human gut
39652
39738
+
Leu
CAG
[ENA]
¢þ
>WENV182834559
OKFE01000014
[OKFE] human gut metagenome; human gut
39773
39859
+
Leu
CAG
[ENA]
¢þ
>WENV182834569
OKFE01000028
[OKFE] human gut metagenome; human gut
41107
41031
-
Pro
CGG
[ENA]
¢þ
>WENV182834568
OKFE01000027
[OKFE] human gut metagenome; human gut
42924
42995
+
Trp
CCA
[ENA]
¢þ
>WENV182834556
OKFE01000013
[OKFE] human gut metagenome; human gut
47006
47093
+
Ser
GGA
[ENA]
¢þ
>WENV182834544
OKFE01000006
[OKFE] human gut metagenome; human gut
53771
53846
+
Gly
GCC
[ENA]
¢þ
>WENV182834560
OKFE01000019
[OKFE] human gut metagenome; human gut
53823
53898
+
Arg
CCT
[ENA]
¢þ
>WENV182834545
OKFE01000006
[OKFE] human gut metagenome; human gut
53900
53973
+
Cys
GCA
[ENA]
¢þ
>WENV182834546
OKFE01000006
[OKFE] human gut metagenome; human gut
53986
54072
+
Leu
TAA
[ENA]
¢þ
>WENV182834543
OKFE01000005
[OKFE] human gut metagenome; human gut
61270
61197
-
Gly
CCC
[ENA]
¢þ
>WENV182834547
OKFE01000009
[OKFE] human gut metagenome; human gut
63480
63556
+
Arg
TCT
[ENA]
¢þ
>WENV182834540
OKFE01000002
[OKFE] human gut metagenome; human gut
64091
64019
-
Thr
CGT
[ENA]
¢þ
>WENV182834571
OKFE01000036
[OKFE] human gut metagenome; human gut
65262
65336
+
Lys
CTT
[ENA]
¢þ
>WENV182834565
OKFE01000022
[OKFE] human gut metagenome; human gut
85691
85615
-
Pro
GGG
[ENA]
¢þ
>WENV182834557
OKFE01000013
[OKFE] human gut metagenome; human gut
99017
99104
+
Ser
TGA
[ENA]
¢þ
>WENV182834555
OKFE01000012
[OKFE] human gut metagenome; human gut
121441
121368
-
Pro
TGG
[ENA]
¢þ
>WENV182834554
OKFE01000012
[OKFE] human gut metagenome; human gut
121526
121453
-
Arg
ACG
[ENA]
¢þ
>WENV182834553
OKFE01000012
[OKFE] human gut metagenome; human gut
121626
121541
-
Leu
TAA
[ENA]
¢þ
>WENV182834552
OKFE01000012
[OKFE] human gut metagenome; human gut
121713
121642
-
Gly
GCC
[ENA]
¢þ
>WENV182834551
OKFE01000012
[OKFE] human gut metagenome; human gut
121793
121718
-
Thr
TGT
[ENA]
¢þ
>WENV182834550
OKFE01000012
[OKFE] human gut metagenome; human gut
121882
121799
-
Leu
TAG
[ENA]
¢þ
>WENV182834549
OKFE01000012
[OKFE] human gut metagenome; human gut
121971
121897
-
Lys
TTT
[ENA]
¢þ
>WENV182834548
OKFE01000012
[OKFE] human gut metagenome; human gut
122050
121976
-
Val
TAC
[ENA]
¢þ
>WENV182834542
OKFE01000005
[OKFE] human gut metagenome; human gut
171218
171293
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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