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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFF] human gut metagenome; human gut
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182834707
OKFF01000806
[OKFF] human gut metagenome; human gut
2
78
+
Arg
ACG
[ENA]
¢þ
>WENV182834728
OKFF01003313
[OKFF] human gut metagenome; human gut
103
177
+
Gln
CTG
[ENA]
¢þ
>WENV182834710
OKFF01000850
[OKFF] human gut metagenome; human gut
103
178
+
Trp
CCA
[ENA]
¢þ
>WENV182834716
OKFF01001156
[OKFF] human gut metagenome; human gut
115
190
+
Ala
GGC
[ENA]
¢þ
>WENV182834723
OKFF01001669
[OKFF] human gut metagenome; human gut
134
59
-
Val
TAC
[ENA]
¢þ
>WENV182834706
OKFF01000699
[OKFF] human gut metagenome; human gut
139
52
-
Ser
TGA
[ENA]
¢þ
>WENV182834708
OKFF01000806
[OKFF] human gut metagenome; human gut
140
216
+
Arg
ACG
[ENA]
¢þ
>WENV182834684
OKFF01000245
[OKFF] human gut metagenome; human gut
143
67
-
Val
GAC
[ENA]
¢þ
>WENV182834731
OKFF01004097
[OKFF] human gut metagenome; human gut
148
220
+
Gly
CCC
[ENA]
¢þ
>WENV182834729
OKFF01004045
[OKFF] human gut metagenome; human gut
171
245
+
Gly
TCC
[ENA]
¢þ
>WENV182834727
OKFF01002850
[OKFF] human gut metagenome; human gut
194
268
+
Arg
CCT
[ENA]
¢þ
>WENV182834730
OKFF01004045
[OKFF] human gut metagenome; human gut
251
326
+
Thr
GGT
[ENA]
¢þ
>WENV182834694
OKFF01000318
[OKFF] human gut metagenome; human gut
287
211
-
Arg
TCT
[ENA]
¢þ
>WENV182834693
OKFF01000318
[OKFF] human gut metagenome; human gut
370
293
-
Ile2
CAT
[ENA]
¢þ
>WENV182834718
OKFF01001311
[OKFF] human gut metagenome; human gut
426
351
-
Glu
TTC
[ENA]
¢þ
>WENV182834715
OKFF01001011
[OKFF] human gut metagenome; human gut
448
359
-
Ser
GGA
[ENA]
¢þ
>WENV182834722
OKFF01001590
[OKFF] human gut metagenome; human gut
537
613
+
Arg
TCT
[ENA]
¢þ
>WENV182834717
OKFF01001211
[OKFF] human gut metagenome; human gut
646
722
+
Asp
GTC
[ENA]
¢þ
>WENV182834677
OKFF01000059
[OKFF] human gut metagenome; human gut
954
878
-
Pro
CGG
[ENA]
¢þ
>WENV182834711
OKFF01000861
[OKFF] human gut metagenome; human gut
1029
1104
+
Ile2
CAT
[ENA]
¢þ
>WENV182834725
OKFF01001848
[OKFF] human gut metagenome; human gut
1033
1108
+
Val
TAC
[ENA]
¢þ
>WENV182834700
OKFF01000445
[OKFF] human gut metagenome; human gut
1074
1149
+
Asn
GTT
[ENA]
¢þ
>WENV182834726
OKFF01001848
[OKFF] human gut metagenome; human gut
1116
1191
+
Lys
TTT
[ENA]
¢þ
>WENV182834698
OKFF01000422
[OKFF] human gut metagenome; human gut
1186
1270
+
Tyr
GTA
[ENA]
¢þ
>WENV182834712
OKFF01000889
[OKFF] human gut metagenome; human gut
1301
1376
+
Ala
GGC
[ENA]
¢þ
>WENV182834719
OKFF01001324
[OKFF] human gut metagenome; human gut
1333
1246
-
Ser
TGA
[ENA]
¢þ
>WENV182834724
OKFF01001747
[OKFF] human gut metagenome; human gut
1351
1267
-
Leu
CAA
[ENA]
¢þ
>WENV182834714
OKFF01000986
[OKFF] human gut metagenome; human gut
1363
1279
-
Tyr
GTA
[ENA]
¢þ
>WENV182834720
OKFF01001378
[OKFF] human gut metagenome; human gut
1565
1489
-
Val
GAC
[ENA]
¢þ
>WENV182834721
OKFF01001552
[OKFF] human gut metagenome; human gut
1641
1547
-
SeC
TCA
[ENA]
¢þ
>WENV182834701
OKFF01000449
[OKFF] human gut metagenome; human gut
1979
2055
+
fMet
CAT
[ENA]
¢þ
>WENV182834683
OKFF01000209
[OKFF] human gut metagenome; human gut
2152
2228
+
Pro
TGG
[ENA]
¢þ
>WENV182834713
OKFF01000923
[OKFF] human gut metagenome; human gut
2355
2280
-
Lys
CTT
[ENA]
¢þ
>WENV182834704
OKFF01000596
[OKFF] human gut metagenome; human gut
2455
2380
-
Thr
CGT
[ENA]
¢þ
>WENV182834695
OKFF01000375
[OKFF] human gut metagenome; human gut
2463
2539
+
fMet
CAT
[ENA]
¢þ
>WENV182834709
OKFF01000812
[OKFF] human gut metagenome; human gut
2727
2633
-
SeC
TCA
[ENA]
¢þ
>WENV182834696
OKFF01000397
[OKFF] human gut metagenome; human gut
2890
2815
-
Asn
GTT
[ENA]
¢þ
>WENV182834702
OKFF01000472
[OKFF] human gut metagenome; human gut
3274
3359
+
Leu
GAG
[ENA]
¢þ
>WENV182834705
OKFF01000622
[OKFF] human gut metagenome; human gut
3609
3533
-
Val
GAC
[ENA]
¢þ
>WENV182834675
OKFF01000011
[OKFF] human gut metagenome; human gut
4233
4157
-
Pro
GGG
[ENA]
¢þ
>WENV182834699
OKFF01000423
[OKFF] human gut metagenome; human gut
4679
4752
+
Gly
CCC
[ENA]
¢þ
>WENV182834703
OKFF01000475
[OKFF] human gut metagenome; human gut
4739
4663
-
Arg
TCT
[ENA]
¢þ
>WENV182834697
OKFF01000413
[OKFF] human gut metagenome; human gut
4981
5068
+
Ser
TGA
[ENA]
¢þ
>WENV182834687
OKFF01000246
[OKFF] human gut metagenome; human gut
5338
5252
-
Leu
TAA
[ENA]
¢þ
>WENV182834679
OKFF01000064
[OKFF] human gut metagenome; human gut
5378
5453
+
Gly
GCC
[ENA]
¢þ
>WENV182834686
OKFF01000246
[OKFF] human gut metagenome; human gut
5425
5352
-
Cys
GCA
[ENA]
¢þ
>WENV182834685
OKFF01000246
[OKFF] human gut metagenome; human gut
5541
5466
-
Gly
GCC
[ENA]
¢þ
>WENV182834681
OKFF01000193
[OKFF] human gut metagenome; human gut
6063
5988
-
Thr
TGT
[ENA]
¢þ
>WENV182834692
OKFF01000315
[OKFF] human gut metagenome; human gut
6680
6604
-
Asp
GTC
[ENA]
¢þ
>WENV182834688
OKFF01000269
[OKFF] human gut metagenome; human gut
6740
6816
+
Arg
CCG
[ENA]
¢þ
>WENV182834689
OKFF01000269
[OKFF] human gut metagenome; human gut
6872
6947
+
His
GTG
[ENA]
¢þ
>WENV182834690
OKFF01000269
[OKFF] human gut metagenome; human gut
6971
7057
+
Leu
CAG
[ENA]
¢þ
>WENV182834691
OKFF01000277
[OKFF] human gut metagenome; human gut
7409
7334
-
Phe
GAA
[ENA]
¢þ
>WENV182834680
OKFF01000164
[OKFF] human gut metagenome; human gut
7928
7841
-
Ser
GGA
[ENA]
¢þ
>WENV182834682
OKFF01000201
[OKFF] human gut metagenome; human gut
9375
9451
+
Met
CAT
[ENA]
¢þ
>WENV182834678
OKFF01000060
[OKFF] human gut metagenome; human gut
13406
13492
+
Leu
CAG
[ENA]
¢þ
>WENV182834676
OKFF01000036
[OKFF] human gut metagenome; human gut
16029
15957
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK