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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFI] human gut metagenome; human gut
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182834901
OKFI01000324
[OKFI] human gut metagenome; human gut
29
105
+
Pro
GGG
[ENA]
¢þ
>WENV182834916
OKFI01002468
[OKFI] human gut metagenome; human gut
75
1
-
Ala
TGC
[ENA]
¢þ
>WENV182834920
OKFI01003016
[OKFI] human gut metagenome; human gut
84
12
-
Thr
GGT
[ENA]
¢þ
>WENV182834897
OKFI01000229
[OKFI] human gut metagenome; human gut
89
163
+
Gln
TTG
[ENA]
¢þ
>WENV182834912
OKFI01001774
[OKFI] human gut metagenome; human gut
118
46
-
Arg
CCT
[ENA]
¢þ
>WENV182834921
OKFI01003703
[OKFI] human gut metagenome; human gut
128
201
+
Lys
TTT
[ENA]
¢þ
>WENV182834915
OKFI01002468
[OKFI] human gut metagenome; human gut
159
85
-
Ile
GAT
[ENA]
¢þ
>WENV182834898
OKFI01000229
[OKFI] human gut metagenome; human gut
179
255
+
Met
CAT
[ENA]
¢þ
>WENV182834919
OKFI01003016
[OKFI] human gut metagenome; human gut
294
211
-
Tyr
GTA
[ENA]
¢þ
>WENV182834899
OKFI01000229
[OKFI] human gut metagenome; human gut
304
378
+
Gln
CTG
[ENA]
¢þ
>WENV182834918
OKFI01003016
[OKFI] human gut metagenome; human gut
387
313
-
Thr
TGT
[ENA]
¢þ
>WENV182834900
OKFI01000234
[OKFI] human gut metagenome; human gut
433
508
+
Phe
GAA
[ENA]
¢þ
>WENV182834886
OKFI01000072
[OKFI] human gut metagenome; human gut
470
376
-
SeC
TCA
[ENA]
¢þ
>WENV182834909
OKFI01001189
[OKFI] human gut metagenome; human gut
471
396
-
Thr
CGT
[ENA]
¢þ
>WENV182834917
OKFI01002987
[OKFI] human gut metagenome; human gut
500
426
-
Glu
TTC
[ENA]
¢þ
>WENV182834913
OKFI01001940
[OKFI] human gut metagenome; human gut
627
541
-
Leu
GAG
[ENA]
¢þ
>WENV182834914
OKFI01002205
[OKFI] human gut metagenome; human gut
636
563
-
Phe
GAA
[ENA]
¢þ
>WENV182834892
OKFI01000137
[OKFI] human gut metagenome; human gut
815
740
-
Ile2
CAT
[ENA]
¢þ
>WENV182834910
OKFI01001635
[OKFI] human gut metagenome; human gut
855
947
+
Ser
GCT
[ENA]
¢þ
>WENV182834908
OKFI01000938
[OKFI] human gut metagenome; human gut
892
979
+
Ser
GGA
[ENA]
¢þ
>WENV182834895
OKFI01000178
[OKFI] human gut metagenome; human gut
946
857
-
Ser
CGA
[ENA]
¢þ
>WENV182834911
OKFI01001635
[OKFI] human gut metagenome; human gut
951
1027
+
Arg
ACG
[ENA]
¢þ
>WENV182834907
OKFI01000797
[OKFI] human gut metagenome; human gut
1010
924
-
Leu
TAA
[ENA]
¢þ
>WENV182834906
OKFI01000797
[OKFI] human gut metagenome; human gut
1096
1023
-
Cys
GCA
[ENA]
¢þ
>WENV182834887
OKFI01000073
[OKFI] human gut metagenome; human gut
1135
1211
+
Pro
CGG
[ENA]
¢þ
>WENV182834903
OKFI01000689
[OKFI] human gut metagenome; human gut
1201
1276
+
Ala
GGC
[ENA]
¢þ
>WENV182834905
OKFI01000797
[OKFI] human gut metagenome; human gut
1225
1150
-
Gly
GCC
[ENA]
¢þ
>WENV182834904
OKFI01000713
[OKFI] human gut metagenome; human gut
1451
1538
+
Ser
TGA
[ENA]
¢þ
>WENV182834894
OKFI01000178
[OKFI] human gut metagenome; human gut
1938
2013
+
Asn
GTT
[ENA]
¢þ
>WENV182834888
OKFI01000076
[OKFI] human gut metagenome; human gut
1966
2041
+
Thr
TGT
[ENA]
¢þ
>WENV182834890
OKFI01000085
[OKFI] human gut metagenome; human gut
2005
2081
+
fMet
CAT
[ENA]
¢þ
>WENV182834889
OKFI01000076
[OKFI] human gut metagenome; human gut
2045
2119
+
Gly
TCC
[ENA]
¢þ
>WENV182834902
OKFI01000534
[OKFI] human gut metagenome; human gut
2177
2103
-
Arg
CCT
[ENA]
¢þ
>WENV182834891
OKFI01000108
[OKFI] human gut metagenome; human gut
2220
2145
-
Glu
TTC
[ENA]
¢þ
>WENV182834884
OKFI01000063
[OKFI] human gut metagenome; human gut
2343
2419
+
Asp
GTC
[ENA]
¢þ
>WENV182834893
OKFI01000176
[OKFI] human gut metagenome; human gut
2421
2497
+
Arg
TCT
[ENA]
¢þ
>WENV182834885
OKFI01000063
[OKFI] human gut metagenome; human gut
2428
2503
+
Trp
CCA
[ENA]
¢þ
>WENV182834896
OKFI01000199
[OKFI] human gut metagenome; human gut
2550
2634
+
Leu
CAA
[ENA]
¢þ
>WENV182834883
OKFI01000023
[OKFI] human gut metagenome; human gut
4943
4867
-
Pro
TGG
[ENA]
¢þ
>WENV182834882
OKFI01000023
[OKFI] human gut metagenome; human gut
5072
4986
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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