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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKFQ] human gut metagenome; human gut
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182835754
OKFQ01001171
[OKFQ] human gut metagenome; human gut
42
118
+
fMet
CAT
[ENA]
¢þ
>WENV182835762
OKFQ01001580
[OKFQ] human gut metagenome; human gut
55
131
+
Arg
CCG
[ENA]
¢þ
>WENV182835740
OKFQ01000536
[OKFQ] human gut metagenome; human gut
59
141
+
Tyr
GTA
[ENA]
¢þ
>WENV182835741
OKFQ01000536
[OKFQ] human gut metagenome; human gut
156
229
+
Trp
CCA
[ENA]
¢þ
>WENV182835763
OKFQ01001580
[OKFQ] human gut metagenome; human gut
162
237
+
His
GTG
[ENA]
¢þ
>WENV182835761
OKFQ01001325
[OKFQ] human gut metagenome; human gut
190
115
-
Ala
TGC
[ENA]
¢þ
>WENV182835742
OKFQ01000536
[OKFQ] human gut metagenome; human gut
232
307
+
His
GTG
[ENA]
¢þ
>WENV182835746
OKFQ01000604
[OKFQ] human gut metagenome; human gut
246
321
+
Phe
GAA
[ENA]
¢þ
>WENV182835764
OKFQ01001580
[OKFQ] human gut metagenome; human gut
262
338
+
Pro
TGG
[ENA]
¢þ
>WENV182835760
OKFQ01001325
[OKFQ] human gut metagenome; human gut
281
208
-
Pro
TGG
[ENA]
¢þ
>WENV182835751
OKFQ01000842
[OKFQ] human gut metagenome; human gut
295
220
-
Lys
TTT
[ENA]
¢þ
>WENV182835743
OKFQ01000536
[OKFQ] human gut metagenome; human gut
323
396
+
Gly
TCC
[ENA]
¢þ
>WENV182835747
OKFQ01000604
[OKFQ] human gut metagenome; human gut
324
399
+
Asn
GTT
[ENA]
¢þ
>WENV182835759
OKFQ01001325
[OKFQ] human gut metagenome; human gut
365
290
-
Arg
ACG
[ENA]
¢þ
>WENV182835748
OKFQ01000821
[OKFQ] human gut metagenome; human gut
389
314
-
Arg
TCT
[ENA]
¢þ
>WENV182835765
OKFQ01001580
[OKFQ] human gut metagenome; human gut
391
467
+
Arg
TCT
[ENA]
¢þ
>WENV182835750
OKFQ01000842
[OKFQ] human gut metagenome; human gut
400
314
-
Leu
TAA
[ENA]
¢þ
>WENV182835744
OKFQ01000536
[OKFQ] human gut metagenome; human gut
411
485
+
Asn
GTT
[ENA]
¢þ
>WENV182835758
OKFQ01001325
[OKFQ] human gut metagenome; human gut
471
383
-
Leu
TAA
[ENA]
¢þ
>WENV182835749
OKFQ01000842
[OKFQ] human gut metagenome; human gut
480
405
-
Gly
GCC
[ENA]
¢þ
>WENV182835745
OKFQ01000536
[OKFQ] human gut metagenome; human gut
487
577
+
Ser
GCT
[ENA]
¢þ
>WENV182835757
OKFQ01001325
[OKFQ] human gut metagenome; human gut
556
482
-
Gly
GCC
[ENA]
¢þ
>WENV182835756
OKFQ01001325
[OKFQ] human gut metagenome; human gut
642
559
-
Leu
TAG
[ENA]
¢þ
>WENV182835755
OKFQ01001325
[OKFQ] human gut metagenome; human gut
720
645
-
Lys
TTT
[ENA]
¢þ
>WENV182835752
OKFQ01001039
[OKFQ] human gut metagenome; human gut
1026
1102
+
Met
CAT
[ENA]
¢þ
>WENV182835753
OKFQ01001039
[OKFQ] human gut metagenome; human gut
1108
1192
+
Leu
TAG
[ENA]
¢þ
>WENV182835735
OKFQ01000282
[OKFQ] human gut metagenome; human gut
1549
1474
-
Val
TAC
[ENA]
¢þ
>WENV182835738
OKFQ01000319
[OKFQ] human gut metagenome; human gut
1660
1585
-
Ala
TGC
[ENA]
¢þ
>WENV182835737
OKFQ01000319
[OKFQ] human gut metagenome; human gut
1790
1714
-
Ile
GAT
[ENA]
¢þ
>WENV182835739
OKFQ01000358
[OKFQ] human gut metagenome; human gut
2148
2072
-
Asp
GTC
[ENA]
¢þ
>WENV182835733
OKFQ01000228
[OKFQ] human gut metagenome; human gut
2516
2610
+
SeC
TCA
[ENA]
¢þ
>WENV182835734
OKFQ01000282
[OKFQ] human gut metagenome; human gut
3245
3320
+
Ala
GGC
[ENA]
¢þ
>WENV182835736
OKFQ01000304
[OKFQ] human gut metagenome; human gut
3627
3555
-
Arg
CCG
[ENA]
¢þ
>WENV182835726
OKFQ01000135
[OKFQ] human gut metagenome; human gut
4064
4157
+
Ser
GCT
[ENA]
¢þ
>WENV182835727
OKFQ01000135
[OKFQ] human gut metagenome; human gut
4182
4258
+
Arg
ACG
[ENA]
¢þ
>WENV182835728
OKFQ01000135
[OKFQ] human gut metagenome; human gut
4312
4388
+
Arg
ACG
[ENA]
¢þ
>WENV182835729
OKFQ01000171
[OKFQ] human gut metagenome; human gut
4743
4818
+
Thr
TGT
[ENA]
¢þ
>WENV182835723
OKFQ01000014
[OKFQ] human gut metagenome; human gut
4826
4899
+
fMet
CAT
[ENA]
¢þ
>WENV182835730
OKFQ01000171
[OKFQ] human gut metagenome; human gut
4849
4933
+
Tyr
GTA
[ENA]
¢þ
>WENV182835724
OKFQ01000014
[OKFQ] human gut metagenome; human gut
4909
4981
+
Asp
GTC
[ENA]
¢þ
>WENV182835731
OKFQ01000171
[OKFQ] human gut metagenome; human gut
4975
5049
+
Gly
TCC
[ENA]
¢þ
>WENV182835732
OKFQ01000171
[OKFQ] human gut metagenome; human gut
5053
5128
+
Thr
GGT
[ENA]
¢þ
>WENV182835725
OKFQ01000121
[OKFQ] human gut metagenome; human gut
5165
5254
+
Ser
GGA
[ENA]
¢þ
>WENV182835722
OKFQ01000012
[OKFQ] human gut metagenome; human gut
6225
6317
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK