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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFY] human gut metagenome; human gut
HIT:
108 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182836601
OKFY01000035
[OKFY] human gut metagenome; human gut
70
146
+
Val
GAC
[ENA]
¢þ
>WENV182836625
OKFY01000073
[OKFY] human gut metagenome; human gut
71
147
+
Met
CAT
[ENA]
¢þ
>WENV182836600
OKFY01000024
[OKFY] human gut metagenome; human gut
98
172
+
Gln
CTG
[ENA]
¢þ
>WENV182836606
OKFY01000043
[OKFY] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182836682
OKFY01000850
[OKFY] human gut metagenome; human gut
125
196
+
Asp
GTC
[ENA]
¢þ
>WENV182836596
OKFY01000018
[OKFY] human gut metagenome; human gut
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV182836626
OKFY01000073
[OKFY] human gut metagenome; human gut
195
269
+
Gln
CTG
[ENA]
¢þ
>WENV182836684
OKFY01000909
[OKFY] human gut metagenome; human gut
205
294
+
Ser
CGA
[ENA]
¢þ
>WENV182836627
OKFY01000073
[OKFY] human gut metagenome; human gut
345
419
+
Gln
CTG
[ENA]
¢þ
>WENV182836671
OKFY01000265
[OKFY] human gut metagenome; human gut
371
286
-
Leu
CAA
[ENA]
¢þ
>WENV182836670
OKFY01000265
[OKFY] human gut metagenome; human gut
454
384
-
Cys
GCA
[ENA]
¢þ
>WENV182836681
OKFY01000818
[OKFY] human gut metagenome; human gut
477
402
-
Ala
TGC
[ENA]
¢þ
>WENV182836683
OKFY01000850
[OKFY] human gut metagenome; human gut
480
560
+
Ser
TGA
[ENA]
¢þ
>WENV182836686
OKFY01000937
[OKFY] human gut metagenome; human gut
526
601
+
Val
TAC
[ENA]
¢þ
>WENV182836669
OKFY01000265
[OKFY] human gut metagenome; human gut
552
479
-
Gln
TTG
[ENA]
¢þ
>WENV182836680
OKFY01000818
[OKFY] human gut metagenome; human gut
590
514
-
Ile
GAT
[ENA]
¢þ
>WENV182836668
OKFY01000265
[OKFY] human gut metagenome; human gut
638
565
-
His
GTG
[ENA]
¢þ
>WENV182836685
OKFY01000934
[OKFY] human gut metagenome; human gut
639
566
-
Gly
TCC
[ENA]
¢þ
>WENV182836667
OKFY01000265
[OKFY] human gut metagenome; human gut
748
675
-
Trp
CCA
[ENA]
¢þ
>WENV182836666
OKFY01000265
[OKFY] human gut metagenome; human gut
834
752
-
Tyr
GTA
[ENA]
¢þ
>WENV182836664
OKFY01000205
[OKFY] human gut metagenome; human gut
861
788
-
Arg
CCG
[ENA]
¢þ
>WENV182836655
OKFY01000178
[OKFY] human gut metagenome; human gut
1304
1232
-
Thr
GGT
[ENA]
¢þ
>WENV182836678
OKFY01000439
[OKFY] human gut metagenome; human gut
1639
1564
-
Arg
TCT
[ENA]
¢þ
>WENV182836679
OKFY01000464
[OKFY] human gut metagenome; human gut
2194
2270
+
Ile
GAT
[ENA]
¢þ
>WENV182836673
OKFY01000352
[OKFY] human gut metagenome; human gut
2231
2145
-
Leu
GAG
[ENA]
¢þ
>WENV182836665
OKFY01000224
[OKFY] human gut metagenome; human gut
2760
2684
-
Asp
GTC
[ENA]
¢þ
>WENV182836677
OKFY01000410
[OKFY] human gut metagenome; human gut
3130
3203
+
Lys
CTT
[ENA]
¢þ
>WENV182836674
OKFY01000403
[OKFY] human gut metagenome; human gut
3463
3538
+
Thr
TGT
[ENA]
¢þ
>WENV182836675
OKFY01000403
[OKFY] human gut metagenome; human gut
3547
3631
+
Tyr
GTA
[ENA]
¢þ
>WENV182836676
OKFY01000403
[OKFY] human gut metagenome; human gut
3746
3820
+
Gly
TCC
[ENA]
¢þ
>WENV182836623
OKFY01000065
[OKFY] human gut metagenome; human gut
4342
4267
-
Phe
GAA
[ENA]
¢þ
>WENV182836672
OKFY01000274
[OKFY] human gut metagenome; human gut
4493
4568
+
Thr
CGT
[ENA]
¢þ
>WENV182836619
OKFY01000062
[OKFY] human gut metagenome; human gut
4668
4744
+
Val
GAC
[ENA]
¢þ
>WENV182836628
OKFY01000075
[OKFY] human gut metagenome; human gut
4744
4670
-
Arg
CCT
[ENA]
¢þ
>WENV182836620
OKFY01000062
[OKFY] human gut metagenome; human gut
4749
4825
+
Val
GAC
[ENA]
¢þ
>WENV182836653
OKFY01000172
[OKFY] human gut metagenome; human gut
4751
4837
+
Leu
GAG
[ENA]
¢þ
>WENV182836595
OKFY01000013
[OKFY] human gut metagenome; human gut
6670
6595
-
Phe
GAA
[ENA]
¢þ
>WENV182836649
OKFY01000158
[OKFY] human gut metagenome; human gut
8394
8480
+
Leu
GAG
[ENA]
¢þ
>WENV182836654
OKFY01000172
[OKFY] human gut metagenome; human gut
8768
8844
+
fMet
CAT
[ENA]
¢þ
>WENV182836650
OKFY01000158
[OKFY] human gut metagenome; human gut
10344
10420
+
fMet
CAT
[ENA]
¢þ
>WENV182836637
OKFY01000115
[OKFY] human gut metagenome; human gut
14771
14696
-
Arg
CCT
[ENA]
¢þ
>WENV182836663
OKFY01000179
[OKFY] human gut metagenome; human gut
16475
16402
-
Pro
TGG
[ENA]
¢þ
>WENV182836662
OKFY01000179
[OKFY] human gut metagenome; human gut
16638
16565
-
Arg
ACG
[ENA]
¢þ
>WENV182836661
OKFY01000179
[OKFY] human gut metagenome; human gut
16738
16653
-
Leu
TAA
[ENA]
¢þ
>WENV182836660
OKFY01000179
[OKFY] human gut metagenome; human gut
16825
16754
-
Gly
GCC
[ENA]
¢þ
>WENV182836652
OKFY01000160
[OKFY] human gut metagenome; human gut
16902
16827
-
Ala
GGC
[ENA]
¢þ
>WENV182836659
OKFY01000179
[OKFY] human gut metagenome; human gut
16905
16830
-
Thr
TGT
[ENA]
¢þ
>WENV182836658
OKFY01000179
[OKFY] human gut metagenome; human gut
16994
16911
-
Leu
TAG
[ENA]
¢þ
>WENV182836651
OKFY01000160
[OKFY] human gut metagenome; human gut
17020
16945
-
Ala
GGC
[ENA]
¢þ
>WENV182836657
OKFY01000179
[OKFY] human gut metagenome; human gut
17083
17009
-
Lys
TTT
[ENA]
¢þ
>WENV182836656
OKFY01000179
[OKFY] human gut metagenome; human gut
17162
17088
-
Val
TAC
[ENA]
¢þ
>WENV182836648
OKFY01000154
[OKFY] human gut metagenome; human gut
17690
17617
-
Glu
TTC
[ENA]
¢þ
>WENV182836647
OKFY01000154
[OKFY] human gut metagenome; human gut
17778
17703
-
Ile
GAT
[ENA]
¢þ
>WENV182836646
OKFY01000154
[OKFY] human gut metagenome; human gut
17857
17787
-
Gly
TCC
[ENA]
¢þ
>WENV182836645
OKFY01000154
[OKFY] human gut metagenome; human gut
17945
17868
-
Phe
GAA
[ENA]
¢þ
>WENV182836644
OKFY01000154
[OKFY] human gut metagenome; human gut
18024
17949
-
Asp
GTC
[ENA]
¢þ
>WENV182836643
OKFY01000154
[OKFY] human gut metagenome; human gut
18136
18061
-
fMet
CAT
[ENA]
¢þ
>WENV182836642
OKFY01000154
[OKFY] human gut metagenome; human gut
18258
18169
-
Ser
TGA
[ENA]
¢þ
>WENV182836641
OKFY01000154
[OKFY] human gut metagenome; human gut
18343
18270
-
Glu
TTC
[ENA]
¢þ
>WENV182836640
OKFY01000154
[OKFY] human gut metagenome; human gut
18449
18359
-
Ser
GGA
[ENA]
¢þ
>WENV182836639
OKFY01000154
[OKFY] human gut metagenome; human gut
18566
18491
-
Asn
GTT
[ENA]
¢þ
>WENV182836604
OKFY01000039
[OKFY] human gut metagenome; human gut
22486
22411
-
Asn
GTT
[ENA]
¢þ
>WENV182836638
OKFY01000137
[OKFY] human gut metagenome; human gut
24853
24778
-
Trp
CCA
[ENA]
¢þ
>WENV182836603
OKFY01000039
[OKFY] human gut metagenome; human gut
24998
24923
-
Asn
GTT
[ENA]
¢þ
>WENV182836602
OKFY01000039
[OKFY] human gut metagenome; human gut
26746
26821
+
Asn
GTT
[ENA]
¢þ
>WENV182836633
OKFY01000090
[OKFY] human gut metagenome; human gut
27426
27502
+
Pro
GGG
[ENA]
¢þ
>WENV182836624
OKFY01000071
[OKFY] human gut metagenome; human gut
31122
31197
+
Thr
TGT
[ENA]
¢þ
>WENV182836613
OKFY01000059
[OKFY] human gut metagenome; human gut
34348
34424
+
Arg
TCT
[ENA]
¢þ
>WENV182836621
OKFY01000065
[OKFY] human gut metagenome; human gut
35056
35131
+
Gly
GCC
[ENA]
¢þ
>WENV182836622
OKFY01000065
[OKFY] human gut metagenome; human gut
35287
35362
+
Gly
GCC
[ENA]
¢þ
>WENV182836605
OKFY01000042
[OKFY] human gut metagenome; human gut
36478
36553
+
Ile2
CAT
[ENA]
¢þ
>WENV182836611
OKFY01000046
[OKFY] human gut metagenome; human gut
37882
37788
-
SeC
TCA
[ENA]
¢þ
>WENV182836636
OKFY01000097
[OKFY] human gut metagenome; human gut
38053
38127
+
Arg
CCT
[ENA]
¢þ
>WENV182836607
OKFY01000043
[OKFY] human gut metagenome; human gut
38213
38289
+
Arg
CCG
[ENA]
¢þ
>WENV182836608
OKFY01000043
[OKFY] human gut metagenome; human gut
38346
38421
+
His
GTG
[ENA]
¢þ
>WENV182836609
OKFY01000043
[OKFY] human gut metagenome; human gut
38445
38531
+
Leu
CAG
[ENA]
¢þ
>WENV182836610
OKFY01000043
[OKFY] human gut metagenome; human gut
38574
38650
+
Pro
TGG
[ENA]
¢þ
>WENV182836635
OKFY01000095
[OKFY] human gut metagenome; human gut
39327
39402
+
Thr
CGT
[ENA]
¢þ
>WENV182836634
OKFY01000094
[OKFY] human gut metagenome; human gut
39371
39444
+
Gly
CCC
[ENA]
¢þ
>WENV182836597
OKFY01000019
[OKFY] human gut metagenome; human gut
39482
39395
-
Ser
TGA
[ENA]
¢þ
>WENV182836632
OKFY01000088
[OKFY] human gut metagenome; human gut
39590
39662
+
Thr
CGT
[ENA]
¢þ
>WENV182836629
OKFY01000081
[OKFY] human gut metagenome; human gut
40944
40868
-
Asp
GTC
[ENA]
¢þ
>WENV182836631
OKFY01000087
[OKFY] human gut metagenome; human gut
41802
41727
-
Ala
GGC
[ENA]
¢þ
>WENV182836630
OKFY01000087
[OKFY] human gut metagenome; human gut
41920
41845
-
Ala
GGC
[ENA]
¢þ
>WENV182836618
OKFY01000061
[OKFY] human gut metagenome; human gut
51564
51489
-
Asn
GTT
[ENA]
¢þ
>WENV182836614
OKFY01000061
[OKFY] human gut metagenome; human gut
53322
53397
+
Asn
GTT
[ENA]
¢þ
>WENV182836591
OKFY01000006
[OKFY] human gut metagenome; human gut
60402
60327
-
Ile2
CAT
[ENA]
¢þ
>WENV182836617
OKFY01000061
[OKFY] human gut metagenome; human gut
62320
62245
-
Asn
GTT
[ENA]
¢þ
>WENV182836585
OKFY01000004
[OKFY] human gut metagenome; human gut
66630
66555
-
Asn
GTT
[ENA]
¢þ
>WENV182836616
OKFY01000061
[OKFY] human gut metagenome; human gut
67203
67128
-
Asn
GTT
[ENA]
¢þ
>WENV182836581
OKFY01000004
[OKFY] human gut metagenome; human gut
67621
67710
+
Ser
CGA
[ENA]
¢þ
>WENV182836615
OKFY01000061
[OKFY] human gut metagenome; human gut
68195
68284
+
Ser
CGA
[ENA]
¢þ
>WENV182836592
OKFY01000010
[OKFY] human gut metagenome; human gut
69820
69907
+
Ser
TGA
[ENA]
¢þ
>WENV182836612
OKFY01000055
[OKFY] human gut metagenome; human gut
70109
70193
+
Leu
CAA
[ENA]
¢þ
>WENV182836594
OKFY01000013
[OKFY] human gut metagenome; human gut
81486
81559
+
Gly
CCC
[ENA]
¢þ
>WENV182836580
OKFY01000003
[OKFY] human gut metagenome; human gut
86238
86314
+
Pro
GGG
[ENA]
¢þ
>WENV182836598
OKFY01000021
[OKFY] human gut metagenome; human gut
97078
96994
-
Leu
CAA
[ENA]
¢þ
>WENV182836582
OKFY01000004
[OKFY] human gut metagenome; human gut
105553
105628
+
Gly
GCC
[ENA]
¢þ
>WENV182836583
OKFY01000004
[OKFY] human gut metagenome; human gut
105680
105753
+
Cys
GCA
[ENA]
¢þ
>WENV182836584
OKFY01000004
[OKFY] human gut metagenome; human gut
105766
105852
+
Leu
TAA
[ENA]
¢þ
>WENV182836593
OKFY01000010
[OKFY] human gut metagenome; human gut
113648
113561
-
Ser
GGA
[ENA]
¢þ
>WENV182836589
OKFY01000005
[OKFY] human gut metagenome; human gut
116640
116558
-
Tyr
GTA
[ENA]
¢þ
>WENV182836588
OKFY01000005
[OKFY] human gut metagenome; human gut
116937
116853
-
Tyr
GTA
[ENA]
¢þ
>WENV182836599
OKFY01000022
[OKFY] human gut metagenome; human gut
118268
118344
+
Pro
CGG
[ENA]
¢þ
>WENV182836590
OKFY01000006
[OKFY] human gut metagenome; human gut
133181
133106
-
Phe
GAA
[ENA]
¢þ
>WENV182836586
OKFY01000005
[OKFY] human gut metagenome; human gut
155455
155530
+
Thr
TGT
[ENA]
¢þ
>WENV182836587
OKFY01000005
[OKFY] human gut metagenome; human gut
155608
155682
+
Gly
TCC
[ENA]
¢þ
>WENV182836579
OKFY01000002
[OKFY] human gut metagenome; human gut
260986
261062
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK