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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKGW] human gut metagenome; human gut
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182838768
OKGW01002370
[OKGW] human gut metagenome; human gut
297
213
-
Tyr
GTA
[ENA]
¢þ
>WENV182838745
OKGW01000144
[OKGW] human gut metagenome; human gut
357
283
-
Arg
CCT
[ENA]
¢þ
>WENV182838772
OKGW01002645
[OKGW] human gut metagenome; human gut
357
433
+
Arg
TCT
[ENA]
¢þ
>WENV182838769
OKGW01002518
[OKGW] human gut metagenome; human gut
382
297
-
Ser
TGA
[ENA]
¢þ
>WENV182838760
OKGW01001672
[OKGW] human gut metagenome; human gut
391
316
-
Thr
CGT
[ENA]
¢þ
>WENV182838758
OKGW01001600
[OKGW] human gut metagenome; human gut
400
476
+
Val
GAC
[ENA]
¢þ
>WENV182838771
OKGW01002639
[OKGW] human gut metagenome; human gut
409
496
+
Ser
GGA
[ENA]
¢þ
>WENV182838763
OKGW01001741
[OKGW] human gut metagenome; human gut
446
360
-
Leu
TAA
[ENA]
¢þ
>WENV182838773
OKGW01003528
[OKGW] human gut metagenome; human gut
454
379
-
Val
TAC
[ENA]
¢þ
>WENV182838762
OKGW01001741
[OKGW] human gut metagenome; human gut
533
460
-
Cys
GCA
[ENA]
¢þ
>WENV182838770
OKGW01002636
[OKGW] human gut metagenome; human gut
617
541
-
Pro
TGG
[ENA]
¢þ
>WENV182838766
OKGW01002277
[OKGW] human gut metagenome; human gut
618
543
-
Lys
TTT
[ENA]
¢þ
>WENV182838761
OKGW01001741
[OKGW] human gut metagenome; human gut
649
574
-
Gly
GCC
[ENA]
¢þ
>WENV182838767
OKGW01002313
[OKGW] human gut metagenome; human gut
684
758
+
Asn
GTT
[ENA]
¢þ
>WENV182838765
OKGW01002150
[OKGW] human gut metagenome; human gut
773
697
-
Pro
GGG
[ENA]
¢þ
>WENV182838764
OKGW01001984
[OKGW] human gut metagenome; human gut
824
738
-
Leu
GAG
[ENA]
¢þ
>WENV182838755
OKGW01000721
[OKGW] human gut metagenome; human gut
1028
955
-
Gly
CCC
[ENA]
¢þ
>WENV182838759
OKGW01001605
[OKGW] human gut metagenome; human gut
1138
1063
-
Lys
TTT
[ENA]
¢þ
>WENV182838753
OKGW01000540
[OKGW] human gut metagenome; human gut
1264
1189
-
Trp
CCA
[ENA]
¢þ
>WENV182838751
OKGW01000362
[OKGW] human gut metagenome; human gut
1265
1191
-
Gly
TCC
[ENA]
¢þ
>WENV182838752
OKGW01000540
[OKGW] human gut metagenome; human gut
1394
1318
-
Asp
GTC
[ENA]
¢þ
>WENV182838757
OKGW01001053
[OKGW] human gut metagenome; human gut
1412
1504
+
Ser
GCT
[ENA]
¢þ
>WENV182838756
OKGW01000872
[OKGW] human gut metagenome; human gut
1613
1707
+
SeC
TCA
[ENA]
¢þ
>WENV182838754
OKGW01000696
[OKGW] human gut metagenome; human gut
1767
1843
+
Pro
CGG
[ENA]
¢þ
>WENV182838737
OKGW01000056
[OKGW] human gut metagenome; human gut
2245
2319
+
Ile
GAT
[ENA]
¢þ
>WENV182838738
OKGW01000056
[OKGW] human gut metagenome; human gut
2329
2403
+
Ala
TGC
[ENA]
¢þ
>WENV182838750
OKGW01000347
[OKGW] human gut metagenome; human gut
2399
2325
-
Gln
CTG
[ENA]
¢þ
>WENV182838749
OKGW01000347
[OKGW] human gut metagenome; human gut
2549
2475
-
Gln
CTG
[ENA]
¢þ
>WENV182838748
OKGW01000347
[OKGW] human gut metagenome; human gut
2673
2597
-
Met
CAT
[ENA]
¢þ
>WENV182838747
OKGW01000347
[OKGW] human gut metagenome; human gut
2771
2697
-
Gln
TTG
[ENA]
¢þ
>WENV182838746
OKGW01000347
[OKGW] human gut metagenome; human gut
2879
2795
-
Leu
TAG
[ENA]
¢þ
>WENV182838740
OKGW01000095
[OKGW] human gut metagenome; human gut
3703
3628
-
Asn
GTT
[ENA]
¢þ
>WENV182838744
OKGW01000128
[OKGW] human gut metagenome; human gut
3828
3753
-
Thr
GGT
[ENA]
¢þ
>WENV182838743
OKGW01000128
[OKGW] human gut metagenome; human gut
3908
3834
-
Gly
TCC
[ENA]
¢þ
>WENV182838742
OKGW01000128
[OKGW] human gut metagenome; human gut
4108
4024
-
Tyr
GTA
[ENA]
¢þ
>WENV182838741
OKGW01000128
[OKGW] human gut metagenome; human gut
4194
4119
-
Thr
TGT
[ENA]
¢þ
>WENV182838739
OKGW01000095
[OKGW] human gut metagenome; human gut
4695
4784
+
Ser
CGA
[ENA]
¢þ
>WENV182838736
OKGW01000039
[OKGW] human gut metagenome; human gut
5938
6013
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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