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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKGZ] human gut metagenome; human gut
HIT:
146 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182839080
OKGZ01003389
[OKGZ] human gut metagenome; human gut
7
81
+
Lys
CTT
[ENA]
¢þ
>WENV182839064
OKGZ01001295
[OKGZ] human gut metagenome; human gut
67
141
+
Asn
GTT
[ENA]
¢þ
>WENV182839029
OKGZ01000066
[OKGZ] human gut metagenome; human gut
77
147
+
Cys
GCA
[ENA]
¢þ
>WENV182839081
OKGZ01003759
[OKGZ] human gut metagenome; human gut
83
159
+
Ile
GAT
[ENA]
¢þ
>WENV182839087
OKGZ01004030
[OKGZ] human gut metagenome; human gut
102
29
-
Ala
GGC
[ENA]
¢þ
>WENV182838989
OKGZ01000028
[OKGZ] human gut metagenome; human gut
117
193
+
Arg
ACG
[ENA]
¢þ
>WENV182839038
OKGZ01000101
[OKGZ] human gut metagenome; human gut
133
59
-
Gly
TCC
[ENA]
¢þ
>WENV182839060
OKGZ01000723
[OKGZ] human gut metagenome; human gut
137
64
-
Gly
TCC
[ENA]
¢þ
>WENV182839065
OKGZ01001295
[OKGZ] human gut metagenome; human gut
144
234
+
Ser
GCT
[ENA]
¢þ
>WENV182839084
OKGZ01003903
[OKGZ] human gut metagenome; human gut
151
78
-
Thr
GGT
[ENA]
¢þ
>WENV182839030
OKGZ01000066
[OKGZ] human gut metagenome; human gut
160
245
+
Leu
CAA
[ENA]
¢þ
>WENV182839078
OKGZ01003318
[OKGZ] human gut metagenome; human gut
187
274
+
Leu
GAG
[ENA]
¢þ
>WENV182839059
OKGZ01000723
[OKGZ] human gut metagenome; human gut
230
155
-
His
GTG
[ENA]
¢þ
>WENV182839086
OKGZ01003910
[OKGZ] human gut metagenome; human gut
252
178
-
Pro
TGG
[ENA]
¢þ
>WENV182839013
OKGZ01000043
[OKGZ] human gut metagenome; human gut
269
194
-
Lys
TTT
[ENA]
¢þ
>WENV182839082
OKGZ01003759
[OKGZ] human gut metagenome; human gut
274
349
+
Ala
TGC
[ENA]
¢þ
>WENV182838952
OKGZ01000004
[OKGZ] human gut metagenome; human gut
288
363
+
Thr
GGT
[ENA]
¢þ
>WENV182839079
OKGZ01003339
[OKGZ] human gut metagenome; human gut
293
206
-
Ser
CGA
[ENA]
¢þ
>WENV182839058
OKGZ01000723
[OKGZ] human gut metagenome; human gut
317
243
-
Phe
GAA
[ENA]
¢þ
>WENV182839075
OKGZ01002350
[OKGZ] human gut metagenome; human gut
320
244
-
Pro
CGG
[ENA]
¢þ
>WENV182839083
OKGZ01003903
[OKGZ] human gut metagenome; human gut
328
246
-
Tyr
GTA
[ENA]
¢þ
>WENV182839037
OKGZ01000101
[OKGZ] human gut metagenome; human gut
331
247
-
Tyr
GTA
[ENA]
¢þ
>WENV182839071
OKGZ01001624
[OKGZ] human gut metagenome; human gut
340
265
-
Thr
CGT
[ENA]
¢þ
>WENV182839012
OKGZ01000043
[OKGZ] human gut metagenome; human gut
349
274
-
Val
TAC
[ENA]
¢þ
>WENV182839063
OKGZ01001172
[OKGZ] human gut metagenome; human gut
351
424
+
Gly
CCC
[ENA]
¢þ
>WENV182839074
OKGZ01001870
[OKGZ] human gut metagenome; human gut
366
438
+
Gln
TTG
[ENA]
¢þ
>WENV182839057
OKGZ01000723
[OKGZ] human gut metagenome; human gut
402
327
-
Asp
GTC
[ENA]
¢þ
>WENV182839036
OKGZ01000101
[OKGZ] human gut metagenome; human gut
415
340
-
Thr
TGT
[ENA]
¢þ
>WENV182839062
OKGZ01001052
[OKGZ] human gut metagenome; human gut
436
361
-
Thr
TGT
[ENA]
¢þ
>WENV182839085
OKGZ01003910
[OKGZ] human gut metagenome; human gut
451
522
+
Gly
TCC
[ENA]
¢þ
>WENV182839066
OKGZ01001480
[OKGZ] human gut metagenome; human gut
466
541
+
Arg
ACG
[ENA]
¢þ
>WENV182839011
OKGZ01000043
[OKGZ] human gut metagenome; human gut
471
396
-
Val
TAC
[ENA]
¢þ
>WENV182839056
OKGZ01000723
[OKGZ] human gut metagenome; human gut
500
409
-
Ser
TGA
[ENA]
¢þ
>WENV182839015
OKGZ01000044
[OKGZ] human gut metagenome; human gut
562
487
-
Thr
CGT
[ENA]
¢þ
>WENV182839055
OKGZ01000723
[OKGZ] human gut metagenome; human gut
582
509
-
Ile2
CAT
[ENA]
¢þ
>WENV182839010
OKGZ01000043
[OKGZ] human gut metagenome; human gut
593
518
-
Val
TAC
[ENA]
¢þ
>WENV182839076
OKGZ01002591
[OKGZ] human gut metagenome; human gut
602
678
+
Val
TAC
[ENA]
¢þ
>WENV182839016
OKGZ01000045
[OKGZ] human gut metagenome; human gut
603
678
+
Asn
GTT
[ENA]
¢þ
>WENV182839069
OKGZ01001556
[OKGZ] human gut metagenome; human gut
613
687
+
Ile
GAT
[ENA]
¢þ
>WENV182839054
OKGZ01000723
[OKGZ] human gut metagenome; human gut
683
609
-
Met
CAT
[ENA]
¢þ
>WENV182839077
OKGZ01003013
[OKGZ] human gut metagenome; human gut
684
602
-
Leu
TAG
[ENA]
¢þ
>WENV182839053
OKGZ01000723
[OKGZ] human gut metagenome; human gut
783
708
-
Ala
TGC
[ENA]
¢þ
>WENV182839070
OKGZ01001556
[OKGZ] human gut metagenome; human gut
842
915
+
Ala
TGC
[ENA]
¢þ
>WENV182839072
OKGZ01001778
[OKGZ] human gut metagenome; human gut
848
773
-
Arg
CCG
[ENA]
¢þ
>WENV182839052
OKGZ01000723
[OKGZ] human gut metagenome; human gut
873
800
-
Pro
TGG
[ENA]
¢þ
>WENV182839051
OKGZ01000723
[OKGZ] human gut metagenome; human gut
956
882
-
Arg
ACG
[ENA]
¢þ
>WENV182839073
OKGZ01001784
[OKGZ] human gut metagenome; human gut
1040
1113
+
Trp
CCA
[ENA]
¢þ
>WENV182839050
OKGZ01000723
[OKGZ] human gut metagenome; human gut
1057
969
-
Leu
TAA
[ENA]
¢þ
>WENV182839042
OKGZ01000316
[OKGZ] human gut metagenome; human gut
1060
990
-
Gly
CCC
[ENA]
¢þ
>WENV182839044
OKGZ01000547
[OKGZ] human gut metagenome; human gut
1120
1203
+
Leu
GAG
[ENA]
¢þ
>WENV182839049
OKGZ01000723
[OKGZ] human gut metagenome; human gut
1143
1069
-
Gly
GCC
[ENA]
¢þ
>WENV182839068
OKGZ01001489
[OKGZ] human gut metagenome; human gut
1172
1245
+
Arg
TCT
[ENA]
¢þ
>WENV182839048
OKGZ01000723
[OKGZ] human gut metagenome; human gut
1229
1147
-
Leu
TAG
[ENA]
¢þ
>WENV182839067
OKGZ01001483
[OKGZ] human gut metagenome; human gut
1266
1192
-
His
GTG
[ENA]
¢þ
>WENV182839047
OKGZ01000723
[OKGZ] human gut metagenome; human gut
1313
1238
-
Lys
TTT
[ENA]
¢þ
>WENV182839046
OKGZ01000723
[OKGZ] human gut metagenome; human gut
1395
1320
-
Thr
TGT
[ENA]
¢þ
>WENV182839043
OKGZ01000532
[OKGZ] human gut metagenome; human gut
1413
1485
+
Gln
CTG
[ENA]
¢þ
>WENV182839045
OKGZ01000723
[OKGZ] human gut metagenome; human gut
1477
1402
-
Val
TAC
[ENA]
¢þ
>WENV182839061
OKGZ01000930
[OKGZ] human gut metagenome; human gut
1676
1603
-
Gln
TTG
[ENA]
¢þ
>WENV182839041
OKGZ01000315
[OKGZ] human gut metagenome; human gut
2230
2304
+
Arg
TCT
[ENA]
¢þ
>WENV182838951
OKGZ01000003
[OKGZ] human gut metagenome; human gut
2593
2522
-
Trp
CCA
[ENA]
¢þ
>WENV182839035
OKGZ01000101
[OKGZ] human gut metagenome; human gut
2656
2580
-
Pro
CGG
[ENA]
¢þ
>WENV182839039
OKGZ01000220
[OKGZ] human gut metagenome; human gut
2775
2694
-
Leu
CAG
[ENA]
¢þ
>WENV182839040
OKGZ01000259
[OKGZ] human gut metagenome; human gut
2927
2998
+
Arg
CCG
[ENA]
¢þ
>WENV182839008
OKGZ01000043
[OKGZ] human gut metagenome; human gut
3291
3366
+
Ala
GGC
[ENA]
¢þ
>WENV182839034
OKGZ01000099
[OKGZ] human gut metagenome; human gut
6009
6101
+
Ser
TGA
[ENA]
¢þ
>WENV182838987
OKGZ01000025
[OKGZ] human gut metagenome; human gut
6177
6104
-
Lys
CTT
[ENA]
¢þ
>WENV182839033
OKGZ01000081
[OKGZ] human gut metagenome; human gut
10233
10144
-
Ser
CGA
[ENA]
¢þ
>WENV182839019
OKGZ01000053
[OKGZ] human gut metagenome; human gut
10601
10687
+
Leu
CAG
[ENA]
¢þ
>WENV182838979
OKGZ01000020
[OKGZ] human gut metagenome; human gut
11529
11604
+
Ile2
CAT
[ENA]
¢þ
>WENV182838967
OKGZ01000013
[OKGZ] human gut metagenome; human gut
14189
14114
-
Phe
GAA
[ENA]
¢þ
>WENV182839032
OKGZ01000070
[OKGZ] human gut metagenome; human gut
15645
15574
-
Trp
CCA
[ENA]
¢þ
>WENV182839020
OKGZ01000054
[OKGZ] human gut metagenome; human gut
17055
17131
+
Arg
TCT
[ENA]
¢þ
>WENV182839031
OKGZ01000067
[OKGZ] human gut metagenome; human gut
17699
17628
-
Trp
CCA
[ENA]
¢þ
>WENV182839009
OKGZ01000043
[OKGZ] human gut metagenome; human gut
24136
24062
-
Arg
CCT
[ENA]
¢þ
>WENV182838980
OKGZ01000022
[OKGZ] human gut metagenome; human gut
26856
26931
+
Gly
GCC
[ENA]
¢þ
>WENV182838981
OKGZ01000022
[OKGZ] human gut metagenome; human gut
26972
27045
+
Cys
GCA
[ENA]
¢þ
>WENV182839028
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27049
26976
-
Pro
TGG
[ENA]
¢þ
>WENV182838982
OKGZ01000022
[OKGZ] human gut metagenome; human gut
27059
27145
+
Leu
TAA
[ENA]
¢þ
>WENV182839027
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27134
27061
-
Arg
ACG
[ENA]
¢þ
>WENV182839026
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27234
27149
-
Leu
TAA
[ENA]
¢þ
>WENV182839025
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27321
27250
-
Gly
GCC
[ENA]
¢þ
>WENV182839024
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27401
27326
-
Thr
TGT
[ENA]
¢þ
>WENV182839023
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27490
27407
-
Leu
TAG
[ENA]
¢þ
>WENV182839022
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27579
27505
-
Lys
TTT
[ENA]
¢þ
>WENV182839021
OKGZ01000056
[OKGZ] human gut metagenome; human gut
27658
27584
-
Val
TAC
[ENA]
¢þ
>WENV182839014
OKGZ01000044
[OKGZ] human gut metagenome; human gut
35410
35334
-
Asp
GTC
[ENA]
¢þ
>WENV182839018
OKGZ01000049
[OKGZ] human gut metagenome; human gut
38309
38236
-
Ile2
CAT
[ENA]
¢þ
>WENV182838964
OKGZ01000013
[OKGZ] human gut metagenome; human gut
39659
39734
+
Gly
GCC
[ENA]
¢þ
>WENV182838965
OKGZ01000013
[OKGZ] human gut metagenome; human gut
39758
39833
+
Gly
GCC
[ENA]
¢þ
>WENV182838966
OKGZ01000013
[OKGZ] human gut metagenome; human gut
39857
39932
+
Gly
GCC
[ENA]
¢þ
>WENV182839017
OKGZ01000047
[OKGZ] human gut metagenome; human gut
43653
43737
+
Tyr
GTA
[ENA]
¢þ
>WENV182838991
OKGZ01000030
[OKGZ] human gut metagenome; human gut
47574
47498
-
Val
GAC
[ENA]
¢þ
>WENV182838990
OKGZ01000030
[OKGZ] human gut metagenome; human gut
47656
47580
-
Val
GAC
[ENA]
¢þ
>WENV182838985
OKGZ01000023
[OKGZ] human gut metagenome; human gut
50960
50885
-
Asn
GTT
[ENA]
¢þ
>WENV182839007
OKGZ01000039
[OKGZ] human gut metagenome; human gut
51863
51790
-
Glu
TTC
[ENA]
¢þ
>WENV182839006
OKGZ01000039
[OKGZ] human gut metagenome; human gut
51950
51877
-
Ile
GAT
[ENA]
¢þ
>WENV182839005
OKGZ01000039
[OKGZ] human gut metagenome; human gut
52034
51964
-
Gly
TCC
[ENA]
¢þ
>WENV182839004
OKGZ01000039
[OKGZ] human gut metagenome; human gut
52122
52045
-
Phe
GAA
[ENA]
¢þ
>WENV182839003
OKGZ01000039
[OKGZ] human gut metagenome; human gut
52201
52126
-
Asp
GTC
[ENA]
¢þ
>WENV182839002
OKGZ01000039
[OKGZ] human gut metagenome; human gut
52313
52238
-
fMet
CAT
[ENA]
¢þ
>WENV182839001
OKGZ01000039
[OKGZ] human gut metagenome; human gut
52435
52346
-
Ser
TGA
[ENA]
¢þ
>WENV182839000
OKGZ01000039
[OKGZ] human gut metagenome; human gut
52543
52468
-
Ile2
CAT
[ENA]
¢þ
>WENV182838999
OKGZ01000039
[OKGZ] human gut metagenome; human gut
52637
52562
-
Met
CAT
[ENA]
¢þ
>WENV182838997
OKGZ01000038
[OKGZ] human gut metagenome; human gut
53028
53120
+
Ser
GCT
[ENA]
¢þ
>WENV182838998
OKGZ01000038
[OKGZ] human gut metagenome; human gut
53125
53201
+
Arg
ACG
[ENA]
¢þ
>WENV182838949
OKGZ01000003
[OKGZ] human gut metagenome; human gut
56852
56924
+
Thr
GGT
[ENA]
¢þ
>WENV182838988
OKGZ01000026
[OKGZ] human gut metagenome; human gut
57796
57869
+
Arg
CCG
[ENA]
¢þ
>WENV182838996
OKGZ01000032
[OKGZ] human gut metagenome; human gut
58418
58342
-
Pro
TGG
[ENA]
¢þ
>WENV182838995
OKGZ01000032
[OKGZ] human gut metagenome; human gut
58548
58462
-
Leu
CAG
[ENA]
¢þ
>WENV182838994
OKGZ01000032
[OKGZ] human gut metagenome; human gut
58645
58570
-
His
GTG
[ENA]
¢þ
>WENV182838993
OKGZ01000032
[OKGZ] human gut metagenome; human gut
58790
58714
-
Arg
CCG
[ENA]
¢þ
>WENV182838968
OKGZ01000015
[OKGZ] human gut metagenome; human gut
59011
58924
-
Ser
TGA
[ENA]
¢þ
>WENV182838984
OKGZ01000023
[OKGZ] human gut metagenome; human gut
75238
75163
-
Asn
GTT
[ENA]
¢þ
>WENV182838983
OKGZ01000023
[OKGZ] human gut metagenome; human gut
76229
76318
+
Ser
CGA
[ENA]
¢þ
>WENV182838953
OKGZ01000004
[OKGZ] human gut metagenome; human gut
82997
83083
+
Leu
GAG
[ENA]
¢þ
>WENV182838969
OKGZ01000016
[OKGZ] human gut metagenome; human gut
85089
85165
+
Met
CAT
[ENA]
¢þ
>WENV182838970
OKGZ01000016
[OKGZ] human gut metagenome; human gut
85174
85258
+
Leu
TAG
[ENA]
¢þ
>WENV182838971
OKGZ01000016
[OKGZ] human gut metagenome; human gut
85282
85356
+
Gln
TTG
[ENA]
¢þ
>WENV182838972
OKGZ01000016
[OKGZ] human gut metagenome; human gut
85404
85480
+
Met
CAT
[ENA]
¢þ
>WENV182838973
OKGZ01000016
[OKGZ] human gut metagenome; human gut
85499
85573
+
Gln
CTG
[ENA]
¢þ
>WENV182838958
OKGZ01000006
[OKGZ] human gut metagenome; human gut
91310
91386
+
fMet
CAT
[ENA]
¢þ
>WENV182838959
OKGZ01000006
[OKGZ] human gut metagenome; human gut
91435
91511
+
fMet
CAT
[ENA]
¢þ
>WENV182838960
OKGZ01000006
[OKGZ] human gut metagenome; human gut
91560
91636
+
fMet
CAT
[ENA]
¢þ
>WENV182838992
OKGZ01000032
[OKGZ] human gut metagenome; human gut
93109
93034
-
Trp
CCA
[ENA]
¢þ
>WENV182838954
OKGZ01000004
[OKGZ] human gut metagenome; human gut
93138
93214
+
fMet
CAT
[ENA]
¢þ
>WENV182838978
OKGZ01000019
[OKGZ] human gut metagenome; human gut
94260
94173
-
Ser
GGA
[ENA]
¢þ
>WENV182838977
OKGZ01000019
[OKGZ] human gut metagenome; human gut
97155
97068
-
Ser
GGA
[ENA]
¢þ
>WENV182838986
OKGZ01000025
[OKGZ] human gut metagenome; human gut
113934
113861
-
Ile2
CAT
[ENA]
¢þ
>WENV182838957
OKGZ01000005
[OKGZ] human gut metagenome; human gut
122258
122163
-
SeC
TCA
[ENA]
¢þ
>WENV182838975
OKGZ01000017
[OKGZ] human gut metagenome; human gut
132451
132376
-
Arg
TCT
[ENA]
¢þ
>WENV182838976
OKGZ01000018
[OKGZ] human gut metagenome; human gut
142886
142961
+
Lys
CTT
[ENA]
¢þ
>WENV182838948
OKGZ01000002
[OKGZ] human gut metagenome; human gut
145441
145365
-
Pro
GGG
[ENA]
¢þ
>WENV182838955
OKGZ01000004
[OKGZ] human gut metagenome; human gut
175296
175380
+
Leu
CAA
[ENA]
¢þ
>WENV182838962
OKGZ01000006
[OKGZ] human gut metagenome; human gut
178901
178828
-
Gly
CCC
[ENA]
¢þ
>WENV182838974
OKGZ01000017
[OKGZ] human gut metagenome; human gut
181788
181863
+
Arg
CCT
[ENA]
¢þ
>WENV182838956
OKGZ01000004
[OKGZ] human gut metagenome; human gut
200670
200595
-
Ile2
CAT
[ENA]
¢þ
>WENV182838963
OKGZ01000009
[OKGZ] human gut metagenome; human gut
237268
237354
+
Leu
GAG
[ENA]
¢þ
>WENV182838961
OKGZ01000006
[OKGZ] human gut metagenome; human gut
254304
254379
+
Phe
GAA
[ENA]
¢þ
>WENV182838950
OKGZ01000003
[OKGZ] human gut metagenome; human gut
317129
317057
-
Thr
CGT
[ENA]
¢þ
>WENV182838947
OKGZ01000002
[OKGZ] human gut metagenome; human gut
371780
371705
-
Asn
GTT
[ENA]
¢þ
>WENV182838946
OKGZ01000002
[OKGZ] human gut metagenome; human gut
381067
381142
+
Asn
GTT
[ENA]
¢þ
>WENV182838945
OKGZ01000001
[OKGZ] human gut metagenome; human gut
469671
469598
-
Gln
TTG
[ENA]
¢þ
>WENV182838944
OKGZ01000001
[OKGZ] human gut metagenome; human gut
469757
469684
-
His
GTG
[ENA]
¢þ
>WENV182838943
OKGZ01000001
[OKGZ] human gut metagenome; human gut
469867
469794
-
Trp
CCA
[ENA]
¢þ
>WENV182838942
OKGZ01000001
[OKGZ] human gut metagenome; human gut
469953
469871
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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