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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKHA] human gut metagenome; human gut
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182839159
OKHA01003198
[OKHA] human gut metagenome; human gut
1
74
+
Glu
TTC
[ENA]
¢þ
>WENV182839114
OKHA01000039
[OKHA] human gut metagenome; human gut
1
77
+
Met
CAT
[ENA]
¢þ
>WENV182839146
OKHA01000283
[OKHA] human gut metagenome; human gut
43
129
+
Leu
GAG
[ENA]
¢þ
>WENV182839151
OKHA01000733
[OKHA] human gut metagenome; human gut
73
158
+
Leu
CAG
[ENA]
¢þ
>WENV182839124
OKHA01000092
[OKHA] human gut metagenome; human gut
79
4
-
Val
TAC
[ENA]
¢þ
>WENV182839160
OKHA01003198
[OKHA] human gut metagenome; human gut
86
175
+
Ser
TGA
[ENA]
¢þ
>WENV182839158
OKHA01002049
[OKHA] human gut metagenome; human gut
101
176
+
Trp
CCA
[ENA]
¢þ
>WENV182839115
OKHA01000039
[OKHA] human gut metagenome; human gut
125
199
+
Gln
CTG
[ENA]
¢þ
>WENV182839135
OKHA01000192
[OKHA] human gut metagenome; human gut
131
59
-
Thr
CGT
[ENA]
¢þ
>WENV182839150
OKHA01000476
[OKHA] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182839161
OKHA01003198
[OKHA] human gut metagenome; human gut
208
283
+
fMet
CAT
[ENA]
¢þ
>WENV182839156
OKHA01001945
[OKHA] human gut metagenome; human gut
242
329
+
Ser
TGA
[ENA]
¢þ
>WENV182839116
OKHA01000039
[OKHA] human gut metagenome; human gut
275
349
+
Gln
CTG
[ENA]
¢þ
>WENV182839118
OKHA01000047
[OKHA] human gut metagenome; human gut
283
359
+
Arg
ACG
[ENA]
¢þ
>WENV182839162
OKHA01003198
[OKHA] human gut metagenome; human gut
330
405
+
Asp
GTC
[ENA]
¢þ
>WENV182839149
OKHA01000476
[OKHA] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182839163
OKHA01003198
[OKHA] human gut metagenome; human gut
409
486
+
Phe
GAA
[ENA]
¢þ
>WENV182839148
OKHA01000476
[OKHA] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182839144
OKHA01000261
[OKHA] human gut metagenome; human gut
496
407
-
Ser
CGA
[ENA]
¢þ
>WENV182839164
OKHA01003198
[OKHA] human gut metagenome; human gut
497
567
+
Gly
TCC
[ENA]
¢þ
>WENV182839153
OKHA01001262
[OKHA] human gut metagenome; human gut
515
440
-
Arg
TCT
[ENA]
¢þ
>WENV182839165
OKHA01003198
[OKHA] human gut metagenome; human gut
581
654
+
Ile
GAT
[ENA]
¢þ
>WENV182839155
OKHA01001546
[OKHA] human gut metagenome; human gut
707
631
-
Asp
GTC
[ENA]
¢þ
>WENV182839152
OKHA01001137
[OKHA] human gut metagenome; human gut
1015
1086
+
Trp
CCA
[ENA]
¢þ
>WENV182839157
OKHA01002045
[OKHA] human gut metagenome; human gut
1101
1026
-
Trp
CCA
[ENA]
¢þ
>WENV182839154
OKHA01001285
[OKHA] human gut metagenome; human gut
1218
1143
-
Gly
GCC
[ENA]
¢þ
>WENV182839142
OKHA01000212
[OKHA] human gut metagenome; human gut
1621
1535
-
Leu
GAG
[ENA]
¢þ
>WENV182839134
OKHA01000182
[OKHA] human gut metagenome; human gut
1897
1972
+
Arg
CCT
[ENA]
¢þ
>WENV182839133
OKHA01000115
[OKHA] human gut metagenome; human gut
2191
2267
+
Arg
TCT
[ENA]
¢þ
>WENV182839122
OKHA01000092
[OKHA] human gut metagenome; human gut
2778
2853
+
Ala
GGC
[ENA]
¢þ
>WENV182839104
OKHA01000025
[OKHA] human gut metagenome; human gut
2832
2919
+
Ser
GGA
[ENA]
¢þ
>WENV182839123
OKHA01000092
[OKHA] human gut metagenome; human gut
2895
2970
+
Ala
GGC
[ENA]
¢þ
>WENV182839110
OKHA01000034
[OKHA] human gut metagenome; human gut
3221
3296
+
Gly
GCC
[ENA]
¢þ
>WENV182839111
OKHA01000034
[OKHA] human gut metagenome; human gut
3337
3410
+
Cys
GCA
[ENA]
¢þ
>WENV182839112
OKHA01000034
[OKHA] human gut metagenome; human gut
3424
3510
+
Leu
TAA
[ENA]
¢þ
>WENV182839145
OKHA01000271
[OKHA] human gut metagenome; human gut
3667
3740
+
Arg
CCG
[ENA]
¢þ
>WENV182839147
OKHA01000283
[OKHA] human gut metagenome; human gut
4060
4136
+
fMet
CAT
[ENA]
¢þ
>WENV182839099
OKHA01000010
[OKHA] human gut metagenome; human gut
4422
4495
+
Gly
CCC
[ENA]
¢þ
>WENV182839143
OKHA01000240
[OKHA] human gut metagenome; human gut
6639
6711
+
Thr
GGT
[ENA]
¢þ
>WENV182839136
OKHA01000198
[OKHA] human gut metagenome; human gut
8624
8706
+
Tyr
GTA
[ENA]
¢þ
>WENV182839137
OKHA01000198
[OKHA] human gut metagenome; human gut
8710
8783
+
Trp
CCA
[ENA]
¢þ
>WENV182839138
OKHA01000198
[OKHA] human gut metagenome; human gut
8820
8893
+
His
GTG
[ENA]
¢þ
>WENV182839139
OKHA01000198
[OKHA] human gut metagenome; human gut
8906
8979
+
Gln
TTG
[ENA]
¢þ
>WENV182839140
OKHA01000198
[OKHA] human gut metagenome; human gut
9004
9074
+
Cys
GCA
[ENA]
¢þ
>WENV182839141
OKHA01000198
[OKHA] human gut metagenome; human gut
9087
9172
+
Leu
CAA
[ENA]
¢þ
>WENV182839132
OKHA01000093
[OKHA] human gut metagenome; human gut
12279
12206
-
Pro
TGG
[ENA]
¢þ
>WENV182839131
OKHA01000093
[OKHA] human gut metagenome; human gut
12442
12369
-
Arg
ACG
[ENA]
¢þ
>WENV182839130
OKHA01000093
[OKHA] human gut metagenome; human gut
12542
12457
-
Leu
TAA
[ENA]
¢þ
>WENV182839129
OKHA01000093
[OKHA] human gut metagenome; human gut
12629
12558
-
Gly
GCC
[ENA]
¢þ
>WENV182839128
OKHA01000093
[OKHA] human gut metagenome; human gut
12709
12634
-
Thr
TGT
[ENA]
¢þ
>WENV182839127
OKHA01000093
[OKHA] human gut metagenome; human gut
12798
12715
-
Leu
TAG
[ENA]
¢þ
>WENV182839126
OKHA01000093
[OKHA] human gut metagenome; human gut
12887
12813
-
Lys
TTT
[ENA]
¢þ
>WENV182839125
OKHA01000093
[OKHA] human gut metagenome; human gut
12966
12892
-
Val
TAC
[ENA]
¢þ
>WENV182839106
OKHA01000029
[OKHA] human gut metagenome; human gut
23031
23107
+
Arg
CCG
[ENA]
¢þ
>WENV182839107
OKHA01000029
[OKHA] human gut metagenome; human gut
23163
23238
+
His
GTG
[ENA]
¢þ
>WENV182839121
OKHA01000083
[OKHA] human gut metagenome; human gut
23181
23105
-
Asp
GTC
[ENA]
¢þ
>WENV182839108
OKHA01000029
[OKHA] human gut metagenome; human gut
23262
23348
+
Leu
CAG
[ENA]
¢þ
>WENV182839109
OKHA01000029
[OKHA] human gut metagenome; human gut
23391
23467
+
Pro
TGG
[ENA]
¢þ
>WENV182839119
OKHA01000051
[OKHA] human gut metagenome; human gut
28608
28533
-
Thr
CGT
[ENA]
¢þ
>WENV182839103
OKHA01000021
[OKHA] human gut metagenome; human gut
29140
29065
-
Phe
GAA
[ENA]
¢þ
>WENV182839120
OKHA01000063
[OKHA] human gut metagenome; human gut
30453
30545
+
Ser
GCT
[ENA]
¢þ
>WENV182839101
OKHA01000016
[OKHA] human gut metagenome; human gut
35192
35108
-
Tyr
GTA
[ENA]
¢þ
>WENV182839100
OKHA01000016
[OKHA] human gut metagenome; human gut
35492
35408
-
Tyr
GTA
[ENA]
¢þ
>WENV182839117
OKHA01000045
[OKHA] human gut metagenome; human gut
37886
37792
-
SeC
TCA
[ENA]
¢þ
>WENV182839113
OKHA01000038
[OKHA] human gut metagenome; human gut
39245
39319
+
Arg
CCT
[ENA]
¢þ
>WENV182839105
OKHA01000025
[OKHA] human gut metagenome; human gut
50608
50521
-
Ser
TGA
[ENA]
¢þ
>WENV182839093
OKHA01000003
[OKHA] human gut metagenome; human gut
51841
51766
-
Asn
GTT
[ENA]
¢þ
>WENV182839088
OKHA01000003
[OKHA] human gut metagenome; human gut
53599
53674
+
Asn
GTT
[ENA]
¢þ
>WENV182839096
OKHA01000008
[OKHA] human gut metagenome; human gut
53811
53735
-
Pro
GGG
[ENA]
¢þ
>WENV182839102
OKHA01000018
[OKHA] human gut metagenome; human gut
59423
59348
-
Ile2
CAT
[ENA]
¢þ
>WENV182839092
OKHA01000003
[OKHA] human gut metagenome; human gut
62596
62521
-
Asn
GTT
[ENA]
¢þ
>WENV182839091
OKHA01000003
[OKHA] human gut metagenome; human gut
67837
67762
-
Asn
GTT
[ENA]
¢þ
>WENV182839089
OKHA01000003
[OKHA] human gut metagenome; human gut
68829
68918
+
Ser
CGA
[ENA]
¢þ
>WENV182839090
OKHA01000003
[OKHA] human gut metagenome; human gut
80856
80931
+
Thr
TGT
[ENA]
¢þ
>WENV182839098
OKHA01000009
[OKHA] human gut metagenome; human gut
90946
90870
-
Val
GAC
[ENA]
¢þ
>WENV182839097
OKHA01000009
[OKHA] human gut metagenome; human gut
91027
90951
-
Val
GAC
[ENA]
¢þ
>WENV182839095
OKHA01000006
[OKHA] human gut metagenome; human gut
95098
95012
-
Leu
CAG
[ENA]
¢þ
>WENV182839094
OKHA01000006
[OKHA] human gut metagenome; human gut
95216
95130
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK