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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKHG] human gut metagenome; human gut
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182839853
OKHG01001555
[OKHG] human gut metagenome; human gut
37
124
+
Ser
TGA
[ENA]
¢þ
>WENV182839851
OKHG01001453
[OKHG] human gut metagenome; human gut
85
171
+
Leu
CAG
[ENA]
¢þ
>WENV182839831
OKHG01000178
[OKHG] human gut metagenome; human gut
121
35
-
Leu
GAG
[ENA]
¢þ
>WENV182839848
OKHG01000952
[OKHG] human gut metagenome; human gut
152
77
-
Phe
GAA
[ENA]
¢þ
>WENV182839846
OKHG01000773
[OKHG] human gut metagenome; human gut
152
78
-
Gln
TTG
[ENA]
¢þ
>WENV182839855
OKHG01001824
[OKHG] human gut metagenome; human gut
191
277
+
Leu
GAG
[ENA]
¢þ
>WENV182839854
OKHG01001774
[OKHG] human gut metagenome; human gut
258
333
+
Thr
CGT
[ENA]
¢þ
>WENV182839845
OKHG01000773
[OKHG] human gut metagenome; human gut
260
176
-
Leu
TAG
[ENA]
¢þ
>WENV182839850
OKHG01001226
[OKHG] human gut metagenome; human gut
270
346
+
Arg
TCT
[ENA]
¢þ
>WENV182839844
OKHG01000773
[OKHG] human gut metagenome; human gut
346
270
-
Met
CAT
[ENA]
¢þ
>WENV182839852
OKHG01001485
[OKHG] human gut metagenome; human gut
749
665
-
Leu
CAA
[ENA]
¢þ
>WENV182839842
OKHG01000600
[OKHG] human gut metagenome; human gut
941
854
-
Ser
GGA
[ENA]
¢þ
>WENV182839849
OKHG01001110
[OKHG] human gut metagenome; human gut
1406
1481
+
Thr
TGT
[ENA]
¢þ
>WENV182839834
OKHG01000204
[OKHG] human gut metagenome; human gut
1688
1613
-
Ala
GGC
[ENA]
¢þ
>WENV182839847
OKHG01000825
[OKHG] human gut metagenome; human gut
1915
1991
+
Pro
CGG
[ENA]
¢þ
>WENV182839841
OKHG01000594
[OKHG] human gut metagenome; human gut
1924
1848
-
Asp
GTC
[ENA]
¢þ
>WENV182839837
OKHG01000263
[OKHG] human gut metagenome; human gut
2259
2335
+
fMet
CAT
[ENA]
¢þ
>WENV182839840
OKHG01000520
[OKHG] human gut metagenome; human gut
2376
2301
-
Thr
GGT
[ENA]
¢þ
>WENV182839843
OKHG01000685
[OKHG] human gut metagenome; human gut
2378
2305
-
Gly
CCC
[ENA]
¢þ
>WENV182839839
OKHG01000520
[OKHG] human gut metagenome; human gut
2456
2382
-
Gly
TCC
[ENA]
¢þ
>WENV182839838
OKHG01000520
[OKHG] human gut metagenome; human gut
2656
2572
-
Tyr
GTA
[ENA]
¢þ
>WENV182839835
OKHG01000243
[OKHG] human gut metagenome; human gut
3385
3310
-
Glu
TTC
[ENA]
¢þ
>WENV182839830
OKHG01000122
[OKHG] human gut metagenome; human gut
3692
3616
-
Pro
GGG
[ENA]
¢þ
>WENV182839836
OKHG01000250
[OKHG] human gut metagenome; human gut
3698
3623
-
Asn
GTT
[ENA]
¢þ
>WENV182839832
OKHG01000204
[OKHG] human gut metagenome; human gut
4390
4465
+
Val
TAC
[ENA]
¢þ
>WENV182839833
OKHG01000204
[OKHG] human gut metagenome; human gut
4469
4544
+
Lys
TTT
[ENA]
¢þ
>WENV182839826
OKHG01000008
[OKHG] human gut metagenome; human gut
4660
4585
-
Gly
GCC
[ENA]
¢þ
>WENV182839827
OKHG01000054
[OKHG] human gut metagenome; human gut
5122
5216
+
SeC
TCA
[ENA]
¢þ
>WENV182839829
OKHG01000092
[OKHG] human gut metagenome; human gut
5937
5861
-
Arg
ACG
[ENA]
¢þ
>WENV182839828
OKHG01000092
[OKHG] human gut metagenome; human gut
6034
5942
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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