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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKHZ] human gut metagenome; human gut
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182841905
OKHZ01001756
[OKHZ] human gut metagenome; human gut
49
125
+
Pro
TGG
[ENA]
¢þ
>WENV182841915
OKHZ01002100
[OKHZ] human gut metagenome; human gut
106
31
-
Asn
GTT
[ENA]
¢þ
>WENV182841896
OKHZ01000483
[OKHZ] human gut metagenome; human gut
139
64
-
Thr
TGT
[ENA]
¢þ
>WENV182841914
OKHZ01002100
[OKHZ] human gut metagenome; human gut
188
114
-
Gly
GCC
[ENA]
¢þ
>WENV182841904
OKHZ01001621
[OKHZ] human gut metagenome; human gut
190
115
-
Ala
TGC
[ENA]
¢þ
>WENV182841891
OKHZ01000377
[OKHZ] human gut metagenome; human gut
216
140
-
Pro
CGG
[ENA]
¢þ
>WENV182841913
OKHZ01002100
[OKHZ] human gut metagenome; human gut
267
192
-
Val
TAC
[ENA]
¢þ
>WENV182841912
OKHZ01002100
[OKHZ] human gut metagenome; human gut
345
271
-
Glu
TTC
[ENA]
¢þ
>WENV182841903
OKHZ01001621
[OKHZ] human gut metagenome; human gut
376
300
-
Ile
GAT
[ENA]
¢þ
>WENV182841911
OKHZ01002100
[OKHZ] human gut metagenome; human gut
426
351
-
Lys
TTT
[ENA]
¢þ
>WENV182841908
OKHZ01002003
[OKHZ] human gut metagenome; human gut
461
385
-
Pro
GGG
[ENA]
¢þ
>WENV182841910
OKHZ01002100
[OKHZ] human gut metagenome; human gut
505
431
-
Gln
TTG
[ENA]
¢þ
>WENV182841916
OKHZ01003131
[OKHZ] human gut metagenome; human gut
512
436
-
Val
GAC
[ENA]
¢þ
>WENV182841898
OKHZ01000563
[OKHZ] human gut metagenome; human gut
589
516
-
Arg
CCT
[ENA]
¢þ
>WENV182841909
OKHZ01002100
[OKHZ] human gut metagenome; human gut
605
530
-
His
GTG
[ENA]
¢þ
>WENV182841906
OKHZ01001938
[OKHZ] human gut metagenome; human gut
612
688
+
Ile
GAT
[ENA]
¢þ
>WENV182841907
OKHZ01001938
[OKHZ] human gut metagenome; human gut
699
774
+
Ala
TGC
[ENA]
¢þ
>WENV182841899
OKHZ01000699
[OKHZ] human gut metagenome; human gut
987
912
-
Asn
GTT
[ENA]
¢þ
>WENV182841902
OKHZ01001469
[OKHZ] human gut metagenome; human gut
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV182841893
OKHZ01000417
[OKHZ] human gut metagenome; human gut
1048
974
-
Gln
CTG
[ENA]
¢þ
>WENV182841892
OKHZ01000417
[OKHZ] human gut metagenome; human gut
1169
1093
-
Met
CAT
[ENA]
¢þ
>WENV182841900
OKHZ01000725
[OKHZ] human gut metagenome; human gut
1548
1464
-
Tyr
GTA
[ENA]
¢þ
>WENV182841881
OKHZ01000058
[OKHZ] human gut metagenome; human gut
1591
1516
-
Thr
CGT
[ENA]
¢þ
>WENV182841889
OKHZ01000215
[OKHZ] human gut metagenome; human gut
1746
1662
-
Leu
CAA
[ENA]
¢þ
>WENV182841901
OKHZ01000929
[OKHZ] human gut metagenome; human gut
2081
2157
+
Val
GAC
[ENA]
¢þ
>WENV182841888
OKHZ01000173
[OKHZ] human gut metagenome; human gut
2287
2214
-
Gly
CCC
[ENA]
¢þ
>WENV182841894
OKHZ01000424
[OKHZ] human gut metagenome; human gut
2357
2281
-
Ser
GCT
[ENA]
¢þ
>WENV182841886
OKHZ01000101
[OKHZ] human gut metagenome; human gut
2377
2301
-
fMet
CAT
[ENA]
¢þ
>WENV182841895
OKHZ01000430
[OKHZ] human gut metagenome; human gut
2811
2887
+
Asp
GTC
[ENA]
¢þ
>WENV182841897
OKHZ01000506
[OKHZ] human gut metagenome; human gut
2910
2997
+
Ser
GGA
[ENA]
¢þ
>WENV182841884
OKHZ01000091
[OKHZ] human gut metagenome; human gut
3690
3614
-
Arg
ACG
[ENA]
¢þ
>WENV182841883
OKHZ01000091
[OKHZ] human gut metagenome; human gut
3959
3883
-
Arg
ACG
[ENA]
¢þ
>WENV182841882
OKHZ01000091
[OKHZ] human gut metagenome; human gut
4056
3964
-
Ser
GCT
[ENA]
¢þ
>WENV182841885
OKHZ01000101
[OKHZ] human gut metagenome; human gut
4269
4183
-
Leu
GAG
[ENA]
¢þ
>WENV182841890
OKHZ01000276
[OKHZ] human gut metagenome; human gut
5004
4929
-
Lys
TTT
[ENA]
¢þ
>WENV182841887
OKHZ01000170
[OKHZ] human gut metagenome; human gut
5785
5871
+
Leu
CAG
[ENA]
¢þ
>WENV182841878
OKHZ01000050
[OKHZ] human gut metagenome; human gut
6141
6216
+
Gly
GCC
[ENA]
¢þ
>WENV182841879
OKHZ01000050
[OKHZ] human gut metagenome; human gut
6271
6344
+
Cys
GCA
[ENA]
¢þ
>WENV182841880
OKHZ01000050
[OKHZ] human gut metagenome; human gut
6357
6443
+
Leu
TAA
[ENA]
¢þ
>WENV182841875
OKHZ01000023
[OKHZ] human gut metagenome; human gut
7992
7898
-
SeC
TCA
[ENA]
¢þ
>WENV182841877
OKHZ01000034
[OKHZ] human gut metagenome; human gut
8460
8535
+
Phe
GAA
[ENA]
¢þ
>WENV182841876
OKHZ01000029
[OKHZ] human gut metagenome; human gut
11241
11166
-
Ile2
CAT
[ENA]
¢þ
>WENV182841874
OKHZ01000007
[OKHZ] human gut metagenome; human gut
14665
14590
-
Thr
GGT
[ENA]
¢þ
>WENV182841873
OKHZ01000007
[OKHZ] human gut metagenome; human gut
14745
14671
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK