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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKIE] human gut metagenome; human gut
HIT:
157 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182842455
OKIE01000684
[OKIE] human gut metagenome; human gut
4
79
+
Ile2
CAT
[ENA]
¢þ
>WENV182842460
OKIE01000897
[OKIE] human gut metagenome; human gut
39
114
+
Thr
GGT
[ENA]
¢þ
>WENV182842404
OKIE01000086
[OKIE] human gut metagenome; human gut
60
132
+
Val
TAC
[ENA]
¢þ
>WENV182842437
OKIE01000617
[OKIE] human gut metagenome; human gut
62
134
+
Asp
GTC
[ENA]
¢þ
>WENV182842429
OKIE01000491
[OKIE] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV182842493
OKIE01002340
[OKIE] human gut metagenome; human gut
77
160
+
Leu
TAG
[ENA]
¢þ
>WENV182842427
OKIE01000408
[OKIE] human gut metagenome; human gut
85
13
-
Thr
CGT
[ENA]
¢þ
>WENV182842456
OKIE01000684
[OKIE] human gut metagenome; human gut
87
163
+
Arg
TCG
[ENA]
¢þ
>WENV182842502
OKIE01002861
[OKIE] human gut metagenome; human gut
103
28
-
His
GTG
[ENA]
¢þ
>WENV182842468
OKIE01001153
[OKIE] human gut metagenome; human gut
127
203
+
Arg
ACG
[ENA]
¢þ
>WENV182842438
OKIE01000617
[OKIE] human gut metagenome; human gut
138
210
+
Lys
TTT
[ENA]
¢þ
>WENV182842480
OKIE01001480
[OKIE] human gut metagenome; human gut
146
72
-
Asn
GTT
[ENA]
¢þ
>WENV182842405
OKIE01000086
[OKIE] human gut metagenome; human gut
149
219
+
Gly
TCC
[ENA]
¢þ
>WENV182842501
OKIE01002684
[OKIE] human gut metagenome; human gut
156
245
+
Ser
GGA
[ENA]
¢þ
>WENV182842479
OKIE01001356
[OKIE] human gut metagenome; human gut
159
234
+
Gly
GCC
[ENA]
¢þ
>WENV182842464
OKIE01001060
[OKIE] human gut metagenome; human gut
162
80
-
Leu
TAG
[ENA]
¢þ
>WENV182842378
OKIE01000023
[OKIE] human gut metagenome; human gut
164
90
-
Gln
TTG
[ENA]
¢þ
>WENV182842492
OKIE01002226
[OKIE] human gut metagenome; human gut
164
90
-
Ile2
CAT
[ENA]
¢þ
>WENV182842494
OKIE01002340
[OKIE] human gut metagenome; human gut
164
238
+
Gly
GCC
[ENA]
¢þ
>WENV182842364
OKIE01000006
[OKIE] human gut metagenome; human gut
169
94
-
Ala
GGC
[ENA]
¢þ
>WENV182842457
OKIE01000684
[OKIE] human gut metagenome; human gut
177
253
+
Arg
TCT
[ENA]
¢þ
>WENV182842430
OKIE01000491
[OKIE] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV182842439
OKIE01000617
[OKIE] human gut metagenome; human gut
219
302
+
Leu
TAG
[ENA]
¢þ
>WENV182842495
OKIE01002340
[OKIE] human gut metagenome; human gut
245
318
+
Gly
TCC
[ENA]
¢þ
>WENV182842406
OKIE01000086
[OKIE] human gut metagenome; human gut
249
324
+
Ile
GAT
[ENA]
¢þ
>WENV182842431
OKIE01000491
[OKIE] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV182842377
OKIE01000023
[OKIE] human gut metagenome; human gut
272
188
-
Leu
TAG
[ENA]
¢þ
>WENV182842487
OKIE01001835
[OKIE] human gut metagenome; human gut
306
381
+
Arg
TCT
[ENA]
¢þ
>WENV182842440
OKIE01000617
[OKIE] human gut metagenome; human gut
317
389
+
Thr
TGT
[ENA]
¢þ
>WENV182842463
OKIE01001060
[OKIE] human gut metagenome; human gut
322
249
-
Thr
CGT
[ENA]
¢þ
>WENV182842496
OKIE01002340
[OKIE] human gut metagenome; human gut
331
407
+
Arg
TCT
[ENA]
¢þ
>WENV182842477
OKIE01001321
[OKIE] human gut metagenome; human gut
332
404
+
Gly
CCC
[ENA]
¢þ
>WENV182842407
OKIE01000086
[OKIE] human gut metagenome; human gut
333
406
+
Glu
TTC
[ENA]
¢þ
>WENV182842499
OKIE01002381
[OKIE] human gut metagenome; human gut
339
412
+
Lys
TTT
[ENA]
¢þ
>WENV182842432
OKIE01000491
[OKIE] human gut metagenome; human gut
352
425
+
Gln
TTG
[ENA]
¢þ
>WENV182842376
OKIE01000023
[OKIE] human gut metagenome; human gut
359
283
-
Met
CAT
[ENA]
¢þ
>WENV182842399
OKIE01000066
[OKIE] human gut metagenome; human gut
368
441
+
Asn
GTT
[ENA]
¢þ
>WENV182842425
OKIE01000361
[OKIE] human gut metagenome; human gut
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182842470
OKIE01001286
[OKIE] human gut metagenome; human gut
390
464
+
Val
TAC
[ENA]
¢þ
>WENV182842486
OKIE01001812
[OKIE] human gut metagenome; human gut
398
312
-
Ser
TGA
[ENA]
¢þ
>WENV182842441
OKIE01000617
[OKIE] human gut metagenome; human gut
405
476
+
Gly
GCC
[ENA]
¢þ
>WENV182842497
OKIE01002340
[OKIE] human gut metagenome; human gut
412
487
+
His
GTG
[ENA]
¢þ
>WENV182842503
OKIE01002935
[OKIE] human gut metagenome; human gut
430
504
+
Ala
TGC
[ENA]
¢þ
>WENV182842500
OKIE01002433
[OKIE] human gut metagenome; human gut
436
361
-
Arg
CCG
[ENA]
¢þ
>WENV182842433
OKIE01000491
[OKIE] human gut metagenome; human gut
450
520
+
Cys
GCA
[ENA]
¢þ
>WENV182842484
OKIE01001744
[OKIE] human gut metagenome; human gut
459
385
-
Met
CAT
[ENA]
¢þ
>WENV182842424
OKIE01000361
[OKIE] human gut metagenome; human gut
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182842471
OKIE01001286
[OKIE] human gut metagenome; human gut
469
543
+
Lys
TTT
[ENA]
¢þ
>WENV182842442
OKIE01000617
[OKIE] human gut metagenome; human gut
484
569
+
Leu
TAA
[ENA]
¢þ
>WENV182842481
OKIE01001497
[OKIE] human gut metagenome; human gut
489
402
-
Ser
GCT
[ENA]
¢þ
>WENV182842498
OKIE01002340
[OKIE] human gut metagenome; human gut
493
567
+
Gln
TTG
[ENA]
¢þ
>WENV182842490
OKIE01001865
[OKIE] human gut metagenome; human gut
527
453
-
Val
CAC
[ENA]
¢þ
>WENV182842434
OKIE01000491
[OKIE] human gut metagenome; human gut
533
618
+
Leu
CAA
[ENA]
¢þ
>WENV182842458
OKIE01000703
[OKIE] human gut metagenome; human gut
547
636
+
Ser
CGA
[ENA]
¢þ
>WENV182842472
OKIE01001286
[OKIE] human gut metagenome; human gut
558
641
+
Leu
TAG
[ENA]
¢þ
>WENV182842443
OKIE01000617
[OKIE] human gut metagenome; human gut
586
661
+
Arg
ACG
[ENA]
¢þ
>WENV182842491
OKIE01001985
[OKIE] human gut metagenome; human gut
614
541
-
Ala
GGC
[ENA]
¢þ
>WENV182842489
OKIE01001865
[OKIE] human gut metagenome; human gut
647
575
-
Val
GAC
[ENA]
¢þ
>WENV182842473
OKIE01001286
[OKIE] human gut metagenome; human gut
647
722
+
Thr
TGT
[ENA]
¢þ
>WENV182842423
OKIE01000361
[OKIE] human gut metagenome; human gut
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182842483
OKIE01001744
[OKIE] human gut metagenome; human gut
665
591
-
Ile2
CAT
[ENA]
¢þ
>WENV182842444
OKIE01000617
[OKIE] human gut metagenome; human gut
665
740
+
Pro
TGG
[ENA]
¢þ
>WENV182842465
OKIE01001068
[OKIE] human gut metagenome; human gut
689
602
-
Ser
GGA
[ENA]
¢þ
>WENV182842474
OKIE01001286
[OKIE] human gut metagenome; human gut
727
798
+
Gly
GCC
[ENA]
¢þ
>WENV182842485
OKIE01001778
[OKIE] human gut metagenome; human gut
733
661
-
Glu
TTC
[ENA]
¢þ
>WENV182842445
OKIE01000617
[OKIE] human gut metagenome; human gut
744
819
+
Met
CAT
[ENA]
¢þ
>WENV182842422
OKIE01000361
[OKIE] human gut metagenome; human gut
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182842488
OKIE01001865
[OKIE] human gut metagenome; human gut
759
688
-
Cys
GCA
[ENA]
¢þ
>WENV182842478
OKIE01001321
[OKIE] human gut metagenome; human gut
779
851
+
Phe
GAA
[ENA]
¢þ
>WENV182842469
OKIE01001153
[OKIE] human gut metagenome; human gut
814
888
+
Arg
TCT
[ENA]
¢þ
>WENV182842475
OKIE01001286
[OKIE] human gut metagenome; human gut
814
899
+
Leu
TAA
[ENA]
¢þ
>WENV182842369
OKIE01000010
[OKIE] human gut metagenome; human gut
829
753
-
Arg
TCT
[ENA]
¢þ
>WENV182842446
OKIE01000617
[OKIE] human gut metagenome; human gut
839
914
+
Ile2
CAT
[ENA]
¢þ
>WENV182842467
OKIE01001151
[OKIE] human gut metagenome; human gut
862
937
+
Glu
TTC
[ENA]
¢þ
>WENV182842482
OKIE01001530
[OKIE] human gut metagenome; human gut
878
803
-
Phe
GAA
[ENA]
¢þ
>WENV182842476
OKIE01001286
[OKIE] human gut metagenome; human gut
914
987
+
Arg
ACG
[ENA]
¢þ
>WENV182842459
OKIE01000852
[OKIE] human gut metagenome; human gut
923
999
+
Asp
GTC
[ENA]
¢þ
>WENV182842447
OKIE01000617
[OKIE] human gut metagenome; human gut
937
1026
+
Ser
TGA
[ENA]
¢þ
>WENV182842466
OKIE01001106
[OKIE] human gut metagenome; human gut
985
897
-
Leu
GAG
[ENA]
¢þ
>WENV182842419
OKIE01000235
[OKIE] human gut metagenome; human gut
1015
940
-
Ala
TGC
[ENA]
¢þ
>WENV182842448
OKIE01000617
[OKIE] human gut metagenome; human gut
1040
1113
+
fMet
CAT
[ENA]
¢þ
>WENV182842436
OKIE01000584
[OKIE] human gut metagenome; human gut
1042
969
-
Ala
TGC
[ENA]
¢þ
>WENV182842449
OKIE01000617
[OKIE] human gut metagenome; human gut
1119
1191
+
Phe
GAA
[ENA]
¢þ
>WENV182842435
OKIE01000584
[OKIE] human gut metagenome; human gut
1158
1084
-
Ile
GAT
[ENA]
¢þ
>WENV182842461
OKIE01000951
[OKIE] human gut metagenome; human gut
1206
1132
-
Leu
CAA
[ENA]
¢þ
>WENV182842450
OKIE01000617
[OKIE] human gut metagenome; human gut
1209
1289
+
Tyr
GTA
[ENA]
¢þ
>WENV182842462
OKIE01001026
[OKIE] human gut metagenome; human gut
1225
1136
-
Ser
GCT
[ENA]
¢þ
>WENV182842451
OKIE01000617
[OKIE] human gut metagenome; human gut
1293
1365
+
Trp
CCA
[ENA]
¢þ
>WENV182842452
OKIE01000617
[OKIE] human gut metagenome; human gut
1375
1449
+
His
GTG
[ENA]
¢þ
>WENV182842453
OKIE01000617
[OKIE] human gut metagenome; human gut
1458
1531
+
Gln
TTG
[ENA]
¢þ
>WENV182842454
OKIE01000617
[OKIE] human gut metagenome; human gut
1537
1622
+
Leu
CAA
[ENA]
¢þ
>WENV182842428
OKIE01000461
[OKIE] human gut metagenome; human gut
1765
1693
-
Thr
GGT
[ENA]
¢þ
>WENV182842418
OKIE01000221
[OKIE] human gut metagenome; human gut
2077
2005
-
Asn
GTT
[ENA]
¢þ
>WENV182842415
OKIE01000107
[OKIE] human gut metagenome; human gut
2341
2267
-
Arg
CCT
[ENA]
¢þ
>WENV182842361
OKIE01000006
[OKIE] human gut metagenome; human gut
2868
2943
+
Val
TAC
[ENA]
¢þ
>WENV182842362
OKIE01000006
[OKIE] human gut metagenome; human gut
2990
3065
+
Val
TAC
[ENA]
¢þ
>WENV182842363
OKIE01000006
[OKIE] human gut metagenome; human gut
3070
3145
+
Lys
TTT
[ENA]
¢þ
>WENV182842426
OKIE01000375
[OKIE] human gut metagenome; human gut
3632
3705
+
Arg
CCG
[ENA]
¢þ
>WENV182842416
OKIE01000164
[OKIE] human gut metagenome; human gut
4156
4081
-
Arg
CCT
[ENA]
¢þ
>WENV182842409
OKIE01000087
[OKIE] human gut metagenome; human gut
4437
4521
+
Ser
GGA
[ENA]
¢þ
>WENV182842421
OKIE01000276
[OKIE] human gut metagenome; human gut
5527
5454
-
Glu
TTC
[ENA]
¢þ
>WENV182842420
OKIE01000276
[OKIE] human gut metagenome; human gut
5633
5543
-
Ser
GGA
[ENA]
¢þ
>WENV182842408
OKIE01000086
[OKIE] human gut metagenome; human gut
5744
5814
+
Thr
GGT
[ENA]
¢þ
>WENV182842417
OKIE01000214
[OKIE] human gut metagenome; human gut
7101
7187
+
Leu
GAG
[ENA]
¢þ
>WENV182842398
OKIE01000065
[OKIE] human gut metagenome; human gut
8201
8277
+
Asp
GTC
[ENA]
¢þ
>WENV182842384
OKIE01000026
[OKIE] human gut metagenome; human gut
12457
12382
-
Thr
TGT
[ENA]
¢þ
>WENV182842383
OKIE01000026
[OKIE] human gut metagenome; human gut
12537
12463
-
Asn
GTT
[ENA]
¢þ
>WENV182842410
OKIE01000088
[OKIE] human gut metagenome; human gut
14293
14373
+
Tyr
GTA
[ENA]
¢þ
>WENV182842411
OKIE01000088
[OKIE] human gut metagenome; human gut
14377
14449
+
Trp
CCA
[ENA]
¢þ
>WENV182842412
OKIE01000088
[OKIE] human gut metagenome; human gut
14459
14533
+
His
GTG
[ENA]
¢þ
>WENV182842413
OKIE01000088
[OKIE] human gut metagenome; human gut
14542
14616
+
Gln
TTG
[ENA]
¢þ
>WENV182842414
OKIE01000088
[OKIE] human gut metagenome; human gut
16010
16081
+
Arg
CCG
[ENA]
¢þ
>WENV182842401
OKIE01000077
[OKIE] human gut metagenome; human gut
18058
18143
+
Leu
AAG
[ENA]
¢þ
>WENV182842400
OKIE01000074
[OKIE] human gut metagenome; human gut
19111
19025
-
Leu
CAG
[ENA]
¢þ
>WENV182842402
OKIE01000077
[OKIE] human gut metagenome; human gut
19342
19414
+
Thr
CGT
[ENA]
¢þ
>WENV182842403
OKIE01000082
[OKIE] human gut metagenome; human gut
20410
20335
-
Arg
TCT
[ENA]
¢þ
>WENV182842392
OKIE01000036
[OKIE] human gut metagenome; human gut
21888
21812
-
Pro
TGG
[ENA]
¢þ
>WENV182842391
OKIE01000036
[OKIE] human gut metagenome; human gut
22017
21931
-
Leu
CAG
[ENA]
¢þ
>WENV182842390
OKIE01000036
[OKIE] human gut metagenome; human gut
22113
22038
-
His
GTG
[ENA]
¢þ
>WENV182842389
OKIE01000036
[OKIE] human gut metagenome; human gut
22248
22172
-
Arg
CCG
[ENA]
¢þ
>WENV182842368
OKIE01000009
[OKIE] human gut metagenome; human gut
24022
24109
+
Ser
GGA
[ENA]
¢þ
>WENV182842372
OKIE01000016
[OKIE] human gut metagenome; human gut
25931
26015
+
Tyr
GTA
[ENA]
¢þ
>WENV182842386
OKIE01000035
[OKIE] human gut metagenome; human gut
28859
28788
-
Arg
CCT
[ENA]
¢þ
>WENV182842375
OKIE01000022
[OKIE] human gut metagenome; human gut
29354
29429
+
Thr
CGT
[ENA]
¢þ
>WENV182842397
OKIE01000056
[OKIE] human gut metagenome; human gut
30788
30713
-
Asn
GTT
[ENA]
¢þ
>WENV182842396
OKIE01000056
[OKIE] human gut metagenome; human gut
31780
31869
+
Ser
CGA
[ENA]
¢þ
>WENV182842393
OKIE01000044
[OKIE] human gut metagenome; human gut
33879
33952
+
Lys
CTT
[ENA]
¢þ
>WENV182842394
OKIE01000049
[OKIE] human gut metagenome; human gut
35952
36036
+
Leu
CAA
[ENA]
¢þ
>WENV182842395
OKIE01000051
[OKIE] human gut metagenome; human gut
36889
36977
+
Ser
CGA
[ENA]
¢þ
>WENV182842385
OKIE01000029
[OKIE] human gut metagenome; human gut
48598
48668
+
Cys
GCA
[ENA]
¢þ
>WENV182842388
OKIE01000036
[OKIE] human gut metagenome; human gut
56792
56717
-
Trp
CCA
[ENA]
¢þ
>WENV182842387
OKIE01000036
[OKIE] human gut metagenome; human gut
56877
56801
-
Asp
GTC
[ENA]
¢þ
>WENV182842381
OKIE01000025
[OKIE] human gut metagenome; human gut
58601
58526
-
Asn
GTT
[ENA]
¢þ
>WENV182842379
OKIE01000025
[OKIE] human gut metagenome; human gut
60350
60425
+
Asn
GTT
[ENA]
¢þ
>WENV182842380
OKIE01000025
[OKIE] human gut metagenome; human gut
62759
62834
+
Asn
GTT
[ENA]
¢þ
>WENV182842365
OKIE01000007
[OKIE] human gut metagenome; human gut
62912
62987
+
Gly
GCC
[ENA]
¢þ
>WENV182842366
OKIE01000007
[OKIE] human gut metagenome; human gut
63042
63115
+
Cys
GCA
[ENA]
¢þ
>WENV182842367
OKIE01000007
[OKIE] human gut metagenome; human gut
63128
63214
+
Leu
TAA
[ENA]
¢þ
>WENV182842382
OKIE01000026
[OKIE] human gut metagenome; human gut
67971
67896
-
Ala
GGC
[ENA]
¢þ
>WENV182842374
OKIE01000017
[OKIE] human gut metagenome; human gut
100529
100455
-
Gln
CTG
[ENA]
¢þ
>WENV182842373
OKIE01000017
[OKIE] human gut metagenome; human gut
100641
100567
-
Gln
CTG
[ENA]
¢þ
>WENV182842357
OKIE01000003
[OKIE] human gut metagenome; human gut
100732
100638
-
SeC
TCA
[ENA]
¢þ
>WENV182842371
OKIE01000014
[OKIE] human gut metagenome; human gut
108043
107967
-
Val
GAC
[ENA]
¢þ
>WENV182842370
OKIE01000014
[OKIE] human gut metagenome; human gut
108124
108048
-
Val
GAC
[ENA]
¢þ
>WENV182842351
OKIE01000002
[OKIE] human gut metagenome; human gut
110055
110128
+
Gly
CCC
[ENA]
¢þ
>WENV182842359
OKIE01000005
[OKIE] human gut metagenome; human gut
118705
118792
+
Ser
GGA
[ENA]
¢þ
>WENV182842347
OKIE01000001
[OKIE] human gut metagenome; human gut
139807
139882
+
Ile2
CAT
[ENA]
¢þ
>WENV182842358
OKIE01000004
[OKIE] human gut metagenome; human gut
157241
157165
-
Pro
GGG
[ENA]
¢þ
>WENV182842360
OKIE01000005
[OKIE] human gut metagenome; human gut
170610
170697
+
Ser
TGA
[ENA]
¢þ
>WENV182842355
OKIE01000002
[OKIE] human gut metagenome; human gut
185922
185846
-
fMet
CAT
[ENA]
¢þ
>WENV182842350
OKIE01000001
[OKIE] human gut metagenome; human gut
234537
234461
-
fMet
CAT
[ENA]
¢þ
>WENV182842349
OKIE01000001
[OKIE] human gut metagenome; human gut
238401
238315
-
Leu
GAG
[ENA]
¢þ
>WENV182842356
OKIE01000003
[OKIE] human gut metagenome; human gut
244598
244674
+
Pro
CGG
[ENA]
¢þ
>WENV182842352
OKIE01000002
[OKIE] human gut metagenome; human gut
310020
310112
+
Ser
GCT
[ENA]
¢þ
>WENV182842353
OKIE01000002
[OKIE] human gut metagenome; human gut
310116
310192
+
Arg
ACG
[ENA]
¢þ
>WENV182842354
OKIE01000002
[OKIE] human gut metagenome; human gut
310256
310332
+
Arg
ACG
[ENA]
¢þ
>WENV182842348
OKIE01000001
[OKIE] human gut metagenome; human gut
337871
337796
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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