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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKIH] human gut metagenome; human gut
HIT:
136 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182842940
OKIH01001530
[OKIH] human gut metagenome; human gut
2
77
+
Asn
GTT
[ENA]
¢þ
>WENV182842936
OKIH01001211
[OKIH] human gut metagenome; human gut
8
84
+
Pro
TGG
[ENA]
¢þ
>WENV182842904
OKIH01000112
[OKIH] human gut metagenome; human gut
68
143
+
Trp
CCA
[ENA]
¢þ
>WENV182842943
OKIH01001865
[OKIH] human gut metagenome; human gut
74
148
+
Gly
GCC
[ENA]
¢þ
>WENV182842931
OKIH01000652
[OKIH] human gut metagenome; human gut
83
158
+
Lys
CTT
[ENA]
¢þ
>WENV182842884
OKIH01000033
[OKIH] human gut metagenome; human gut
84
160
+
Arg
ACG
[ENA]
¢þ
>WENV182842897
OKIH01000089
[OKIH] human gut metagenome; human gut
87
162
+
Lys
TTT
[ENA]
¢þ
>WENV182842942
OKIH01001813
[OKIH] human gut metagenome; human gut
89
168
+
Gln
TTG
[ENA]
¢þ
>WENV182842889
OKIH01000044
[OKIH] human gut metagenome; human gut
106
181
+
Trp
CCA
[ENA]
¢þ
>WENV182842926
OKIH01000408
[OKIH] human gut metagenome; human gut
132
57
-
Phe
GAA
[ENA]
¢þ
>WENV182842856
OKIH01000006
[OKIH] human gut metagenome; human gut
133
59
-
Gly
TCC
[ENA]
¢þ
>WENV182842937
OKIH01001211
[OKIH] human gut metagenome; human gut
137
213
+
Arg
TCT
[ENA]
¢þ
>WENV182842932
OKIH01000669
[OKIH] human gut metagenome; human gut
158
82
-
Arg
CCG
[ENA]
¢þ
>WENV182842944
OKIH01001865
[OKIH] human gut metagenome; human gut
160
248
+
Leu
TAA
[ENA]
¢þ
>WENV182842899
OKIH01000100
[OKIH] human gut metagenome; human gut
163
79
-
Leu
TAG
[ENA]
¢þ
>WENV182842933
OKIH01000705
[OKIH] human gut metagenome; human gut
166
241
+
Glu
TTC
[ENA]
¢þ
>WENV182842898
OKIH01000100
[OKIH] human gut metagenome; human gut
248
172
-
Met
CAT
[ENA]
¢þ
>WENV182842945
OKIH01001865
[OKIH] human gut metagenome; human gut
261
337
+
Arg
ACG
[ENA]
¢þ
>WENV182842894
OKIH01000056
[OKIH] human gut metagenome; human gut
271
184
-
Leu
CAG
[ENA]
¢þ
>WENV182842863
OKIH01000015
[OKIH] human gut metagenome; human gut
330
246
-
Leu
CAA
[ENA]
¢þ
>WENV182842855
OKIH01000006
[OKIH] human gut metagenome; human gut
334
250
-
Tyr
GTA
[ENA]
¢þ
>WENV182842946
OKIH01001865
[OKIH] human gut metagenome; human gut
364
438
+
Pro
TGG
[ENA]
¢þ
>WENV182842854
OKIH01000006
[OKIH] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182842947
OKIH01001865
[OKIH] human gut metagenome; human gut
452
527
+
Ala
TGC
[ENA]
¢þ
>WENV182842938
OKIH01001211
[OKIH] human gut metagenome; human gut
460
371
-
Ser
GGA
[ENA]
¢þ
>WENV182842941
OKIH01001656
[OKIH] human gut metagenome; human gut
512
587
+
Ala
CGC
[ENA]
¢þ
>WENV182842929
OKIH01000504
[OKIH] human gut metagenome; human gut
617
542
-
Ala
GGC
[ENA]
¢þ
>WENV182842858
OKIH01000009
[OKIH] human gut metagenome; human gut
689
616
-
Gly
CCC
[ENA]
¢þ
>WENV182842925
OKIH01000389
[OKIH] human gut metagenome; human gut
725
640
-
Leu
GAG
[ENA]
¢þ
>WENV182842928
OKIH01000504
[OKIH] human gut metagenome; human gut
734
659
-
Ala
GGC
[ENA]
¢þ
>WENV182842939
OKIH01001355
[OKIH] human gut metagenome; human gut
781
855
+
Asn
GTT
[ENA]
¢þ
>WENV182842924
OKIH01000350
[OKIH] human gut metagenome; human gut
867
938
+
Arg
CCG
[ENA]
¢þ
>WENV182842927
OKIH01000482
[OKIH] human gut metagenome; human gut
960
1049
+
Ser
TGA
[ENA]
¢þ
>WENV182842880
OKIH01000022
[OKIH] human gut metagenome; human gut
966
893
-
Arg
CCG
[ENA]
¢þ
>WENV182842923
OKIH01000232
[OKIH] human gut metagenome; human gut
1003
911
-
Ser
TGA
[ENA]
¢þ
>WENV182842913
OKIH01000144
[OKIH] human gut metagenome; human gut
1548
1473
-
Gly
GCC
[ENA]
¢þ
>WENV182842906
OKIH01000124
[OKIH] human gut metagenome; human gut
1552
1628
+
Val
GAC
[ENA]
¢þ
>WENV182842907
OKIH01000127
[OKIH] human gut metagenome; human gut
1664
1589
-
Thr
CGT
[ENA]
¢þ
>WENV182842935
OKIH01000773
[OKIH] human gut metagenome; human gut
1994
1908
-
Leu
TAA
[ENA]
¢þ
>WENV182842934
OKIH01000762
[OKIH] human gut metagenome; human gut
2034
2109
+
Lys
TTT
[ENA]
¢þ
>WENV182842887
OKIH01000037
[OKIH] human gut metagenome; human gut
2050
1975
-
Ile2
CAT
[ENA]
¢þ
>WENV182842930
OKIH01000542
[OKIH] human gut metagenome; human gut
2282
2356
+
Arg
TCT
[ENA]
¢þ
>WENV182842921
OKIH01000215
[OKIH] human gut metagenome; human gut
3127
3051
-
Arg
ACG
[ENA]
¢þ
>WENV182842920
OKIH01000215
[OKIH] human gut metagenome; human gut
3257
3181
-
Arg
ACG
[ENA]
¢þ
>WENV182842919
OKIH01000215
[OKIH] human gut metagenome; human gut
3374
3281
-
Ser
GCT
[ENA]
¢þ
>WENV182842836
OKIH01000002
[OKIH] human gut metagenome; human gut
7386
7313
-
Arg
CCT
[ENA]
¢þ
>WENV182842905
OKIH01000114
[OKIH] human gut metagenome; human gut
7645
7569
-
Asp
GTC
[ENA]
¢þ
>WENV182842915
OKIH01000155
[OKIH] human gut metagenome; human gut
7839
7764
-
Val
TAC
[ENA]
¢þ
>WENV182842853
OKIH01000006
[OKIH] human gut metagenome; human gut
8131
8055
-
Pro
TGG
[ENA]
¢þ
>WENV182842922
OKIH01000225
[OKIH] human gut metagenome; human gut
8243
8319
+
Asp
GTC
[ENA]
¢þ
>WENV182842918
OKIH01000213
[OKIH] human gut metagenome; human gut
8466
8560
+
SeC
TCA
[ENA]
¢þ
>WENV182842914
OKIH01000155
[OKIH] human gut metagenome; human gut
9535
9610
+
Ala
GGC
[ENA]
¢þ
>WENV182842916
OKIH01000182
[OKIH] human gut metagenome; human gut
9607
9678
+
Glu
TTC
[ENA]
¢þ
>WENV182842917
OKIH01000182
[OKIH] human gut metagenome; human gut
9731
9821
+
Ser
GGA
[ENA]
¢þ
>WENV182842903
OKIH01000106
[OKIH] human gut metagenome; human gut
13039
13115
+
fMet
CAT
[ENA]
¢þ
>WENV182842908
OKIH01000128
[OKIH] human gut metagenome; human gut
14088
14003
-
Leu
CAA
[ENA]
¢þ
>WENV182842909
OKIH01000131
[OKIH] human gut metagenome; human gut
14404
14480
+
Met
CAT
[ENA]
¢þ
>WENV182842910
OKIH01000131
[OKIH] human gut metagenome; human gut
14486
14570
+
Leu
TAG
[ENA]
¢þ
>WENV182842911
OKIH01000131
[OKIH] human gut metagenome; human gut
14598
14672
+
Gln
TTG
[ENA]
¢þ
>WENV182842912
OKIH01000131
[OKIH] human gut metagenome; human gut
14720
14794
+
Gln
TTG
[ENA]
¢þ
>WENV182842873
OKIH01000018
[OKIH] human gut metagenome; human gut
16825
16751
-
Trp
CCA
[ENA]
¢þ
>WENV182842902
OKIH01000104
[OKIH] human gut metagenome; human gut
18667
18581
-
Leu
CAG
[ENA]
¢þ
>WENV182842901
OKIH01000104
[OKIH] human gut metagenome; human gut
18785
18700
-
Leu
CAG
[ENA]
¢þ
>WENV182842900
OKIH01000104
[OKIH] human gut metagenome; human gut
18900
18814
-
Leu
CAG
[ENA]
¢þ
>WENV182842892
OKIH01000055
[OKIH] human gut metagenome; human gut
19638
19564
-
Leu
TAA
[ENA]
¢þ
>WENV182842896
OKIH01000064
[OKIH] human gut metagenome; human gut
20489
20565
+
Ile2
CAT
[ENA]
¢þ
>WENV182842888
OKIH01000042
[OKIH] human gut metagenome; human gut
21764
21837
+
Thr
CGT
[ENA]
¢þ
>WENV182842872
OKIH01000018
[OKIH] human gut metagenome; human gut
24284
24209
-
Met
CAT
[ENA]
¢þ
>WENV182842871
OKIH01000018
[OKIH] human gut metagenome; human gut
24390
24317
-
Thr
GGT
[ENA]
¢þ
>WENV182842870
OKIH01000018
[OKIH] human gut metagenome; human gut
24588
24506
-
Tyr
GTA
[ENA]
¢þ
>WENV182842860
OKIH01000014
[OKIH] human gut metagenome; human gut
25994
26067
+
Arg
TCT
[ENA]
¢þ
>WENV182842893
OKIH01000056
[OKIH] human gut metagenome; human gut
33214
33302
+
Ser
CGA
[ENA]
¢þ
>WENV182842895
OKIH01000057
[OKIH] human gut metagenome; human gut
33237
33312
+
Phe
GAA
[ENA]
¢þ
>WENV182842861
OKIH01000014
[OKIH] human gut metagenome; human gut
45193
45266
+
Lys
CTT
[ENA]
¢þ
>WENV182842890
OKIH01000047
[OKIH] human gut metagenome; human gut
49082
49174
+
Ser
GCT
[ENA]
¢þ
>WENV182842891
OKIH01000047
[OKIH] human gut metagenome; human gut
49179
49255
+
Arg
ACG
[ENA]
¢þ
>WENV182842886
OKIH01000036
[OKIH] human gut metagenome; human gut
51169
51093
-
Val
GAC
[ENA]
¢þ
>WENV182842883
OKIH01000024
[OKIH] human gut metagenome; human gut
51216
51292
+
fMet
CAT
[ENA]
¢þ
>WENV182842885
OKIH01000036
[OKIH] human gut metagenome; human gut
51250
51174
-
Val
GAC
[ENA]
¢þ
>WENV182842835
OKIH01000002
[OKIH] human gut metagenome; human gut
54049
53974
-
Thr
TGT
[ENA]
¢þ
>WENV182842862
OKIH01000014
[OKIH] human gut metagenome; human gut
54749
54668
-
Leu
TAG
[ENA]
¢þ
>WENV182842879
OKIH01000020
[OKIH] human gut metagenome; human gut
54780
54851
+
Gln
TTG
[ENA]
¢þ
>WENV182842869
OKIH01000017
[OKIH] human gut metagenome; human gut
71165
71092
-
Arg
ACG
[ENA]
¢þ
>WENV182842852
OKIH01000006
[OKIH] human gut metagenome; human gut
71755
71679
-
Pro
TGG
[ENA]
¢þ
>WENV182842851
OKIH01000006
[OKIH] human gut metagenome; human gut
71886
71800
-
Leu
CAG
[ENA]
¢þ
>WENV182842850
OKIH01000006
[OKIH] human gut metagenome; human gut
71983
71908
-
His
GTG
[ENA]
¢þ
>WENV182842849
OKIH01000006
[OKIH] human gut metagenome; human gut
72127
72051
-
Arg
CCG
[ENA]
¢þ
>WENV182842864
OKIH01000016
[OKIH] human gut metagenome; human gut
77613
77700
+
Ser
TGA
[ENA]
¢þ
>WENV182842837
OKIH01000003
[OKIH] human gut metagenome; human gut
82209
82285
+
Pro
GGG
[ENA]
¢þ
>WENV182842865
OKIH01000016
[OKIH] human gut metagenome; human gut
83155
83242
+
Ser
TGA
[ENA]
¢þ
>WENV182842845
OKIH01000004
[OKIH] human gut metagenome; human gut
91042
90967
-
Asn
GTT
[ENA]
¢þ
>WENV182842839
OKIH01000004
[OKIH] human gut metagenome; human gut
92791
92866
+
Asn
GTT
[ENA]
¢þ
>WENV182842882
OKIH01000023
[OKIH] human gut metagenome; human gut
93711
93635
-
fMet
CAT
[ENA]
¢þ
>WENV182842881
OKIH01000023
[OKIH] human gut metagenome; human gut
95584
95498
-
Leu
GAG
[ENA]
¢þ
>WENV182842857
OKIH01000009
[OKIH] human gut metagenome; human gut
97228
97303
+
Phe
GAA
[ENA]
¢þ
>WENV182842844
OKIH01000004
[OKIH] human gut metagenome; human gut
106571
106496
-
Asn
GTT
[ENA]
¢þ
>WENV182842812
OKIH01000001
[OKIH] human gut metagenome; human gut
107268
107340
+
Gln
CTG
[ENA]
¢þ
>WENV182842813
OKIH01000001
[OKIH] human gut metagenome; human gut
107374
107447
+
Glu
CTC
[ENA]
¢þ
>WENV182842867
OKIH01000017
[OKIH] human gut metagenome; human gut
109049
109136
+
Ser
TGA
[ENA]
¢þ
>WENV182842868
OKIH01000017
[OKIH] human gut metagenome; human gut
109286
109375
+
Ser
GCT
[ENA]
¢þ
>WENV182842843
OKIH01000004
[OKIH] human gut metagenome; human gut
109828
109753
-
Asn
GTT
[ENA]
¢þ
>WENV182842866
OKIH01000016
[OKIH] human gut metagenome; human gut
110950
110863
-
Ser
GGA
[ENA]
¢þ
>WENV182842878
OKIH01000019
[OKIH] human gut metagenome; human gut
111392
111318
-
Gln
CTG
[ENA]
¢þ
>WENV182842877
OKIH01000019
[OKIH] human gut metagenome; human gut
111501
111427
-
Gln
CTG
[ENA]
¢þ
>WENV182842876
OKIH01000019
[OKIH] human gut metagenome; human gut
111619
111543
-
Met
CAT
[ENA]
¢þ
>WENV182842875
OKIH01000019
[OKIH] human gut metagenome; human gut
111711
111637
-
Gln
TTG
[ENA]
¢þ
>WENV182842874
OKIH01000019
[OKIH] human gut metagenome; human gut
111818
111744
-
Gln
TTG
[ENA]
¢þ
>WENV182842859
OKIH01000011
[OKIH] human gut metagenome; human gut
120080
120156
+
Arg
TCT
[ENA]
¢þ
>WENV182842814
OKIH01000001
[OKIH] human gut metagenome; human gut
124231
124308
+
His
GTG
[ENA]
¢þ
>WENV182842826
OKIH01000001
[OKIH] human gut metagenome; human gut
138331
138258
-
Gly
TCC
[ENA]
¢þ
>WENV182842815
OKIH01000001
[OKIH] human gut metagenome; human gut
138502
138578
+
Pro
TGG
[ENA]
¢þ
>WENV182842848
OKIH01000006
[OKIH] human gut metagenome; human gut
151015
151109
+
SeC
TCA
[ENA]
¢þ
>WENV182842827
OKIH01000002
[OKIH] human gut metagenome; human gut
160347
160422
+
Lys
TTT
[ENA]
¢þ
>WENV182842828
OKIH01000002
[OKIH] human gut metagenome; human gut
165507
165580
+
Glu
TTC
[ENA]
¢þ
>WENV182842829
OKIH01000002
[OKIH] human gut metagenome; human gut
165653
165727
+
Asp
GTC
[ENA]
¢þ
>WENV182842847
OKIH01000005
[OKIH] human gut metagenome; human gut
171698
171614
-
Tyr
GTA
[ENA]
¢þ
>WENV182842846
OKIH01000005
[OKIH] human gut metagenome; human gut
171817
171733
-
Tyr
GTA
[ENA]
¢þ
>WENV182842840
OKIH01000004
[OKIH] human gut metagenome; human gut
174543
174618
+
Gly
GCC
[ENA]
¢þ
>WENV182842841
OKIH01000004
[OKIH] human gut metagenome; human gut
174670
174743
+
Cys
GCA
[ENA]
¢þ
>WENV182842842
OKIH01000004
[OKIH] human gut metagenome; human gut
174755
174841
+
Leu
TAA
[ENA]
¢þ
>WENV182842838
OKIH01000003
[OKIH] human gut metagenome; human gut
203713
203785
+
Arg
CCT
[ENA]
¢þ
>WENV182842816
OKIH01000001
[OKIH] human gut metagenome; human gut
226448
226520
+
Asn
GTT
[ENA]
¢þ
>WENV182842817
OKIH01000001
[OKIH] human gut metagenome; human gut
227165
227240
+
Ile2
CAT
[ENA]
¢þ
>WENV182842834
OKIH01000002
[OKIH] human gut metagenome; human gut
340399
340326
-
Gly
CCC
[ENA]
¢þ
>WENV182842818
OKIH01000001
[OKIH] human gut metagenome; human gut
363413
363488
+
Ala
GGC
[ENA]
¢þ
>WENV182842833
OKIH01000002
[OKIH] human gut metagenome; human gut
375425
375340
-
Ser
GGA
[ENA]
¢þ
>WENV182842830
OKIH01000002
[OKIH] human gut metagenome; human gut
441630
441706
+
Pro
CGG
[ENA]
¢þ
>WENV182842819
OKIH01000001
[OKIH] human gut metagenome; human gut
473192
473265
+
Gly
GCC
[ENA]
¢þ
>WENV182842820
OKIH01000001
[OKIH] human gut metagenome; human gut
473281
473352
+
Cys
GCA
[ENA]
¢þ
>WENV182842821
OKIH01000001
[OKIH] human gut metagenome; human gut
473353
473427
+
Val
CAC
[ENA]
¢þ
>WENV182842825
OKIH01000001
[OKIH] human gut metagenome; human gut
524358
524272
-
Leu
GAG
[ENA]
¢þ
>WENV182842824
OKIH01000001
[OKIH] human gut metagenome; human gut
546656
546582
-
Leu
CAA
[ENA]
¢þ
>WENV182842831
OKIH01000002
[OKIH] human gut metagenome; human gut
559761
559835
+
Ile
GAT
[ENA]
¢þ
>WENV182842832
OKIH01000002
[OKIH] human gut metagenome; human gut
560099
560174
+
Ala
TGC
[ENA]
¢þ
>WENV182842822
OKIH01000001
[OKIH] human gut metagenome; human gut
604638
604712
+
Pro
GGG
[ENA]
¢þ
>WENV182842823
OKIH01000001
[OKIH] human gut metagenome; human gut
689464
689539
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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