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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OKII] human gut metagenome; human gut
HIT:
28 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182842961
OKII01000861
[OKII] human gut metagenome; human gut
119
195
+
Arg
ACG
[ENA]
¢þ
>WENV182842967
OKII01001587
[OKII] human gut metagenome; human gut
150
64
-
Leu
GAG
[ENA]
¢þ
>WENV182842974
OKII01003111
[OKII] human gut metagenome; human gut
254
182
-
Arg
CCT
[ENA]
¢þ
>WENV182842970
OKII01002130
[OKII] human gut metagenome; human gut
302
215
-
Ser
GGA
[ENA]
¢þ
>WENV182842969
OKII01001903
[OKII] human gut metagenome; human gut
370
456
+
Leu
CAG
[ENA]
¢þ
>WENV182842953
OKII01000270
[OKII] human gut metagenome; human gut
396
471
+
Thr
TGT
[ENA]
¢þ
>WENV182842972
OKII01002727
[OKII] human gut metagenome; human gut
408
483
+
Ala
GGC
[ENA]
¢þ
>WENV182842975
OKII01003238
[OKII] human gut metagenome; human gut
433
357
-
Arg
TCT
[ENA]
¢þ
>WENV182842963
OKII01001005
[OKII] human gut metagenome; human gut
465
552
+
Ser
TGA
[ENA]
¢þ
>WENV182842954
OKII01000270
[OKII] human gut metagenome; human gut
480
564
+
Tyr
GTA
[ENA]
¢þ
>WENV182842971
OKII01002717
[OKII] human gut metagenome; human gut
489
564
+
Arg
TCT
[ENA]
¢þ
>WENV182842973
OKII01002727
[OKII] human gut metagenome; human gut
525
600
+
Ala
GGC
[ENA]
¢þ
>WENV182842968
OKII01001765
[OKII] human gut metagenome; human gut
526
443
-
Leu
CAA
[ENA]
¢þ
>WENV182842955
OKII01000270
[OKII] human gut metagenome; human gut
681
755
+
Gly
TCC
[ENA]
¢þ
>WENV182842956
OKII01000270
[OKII] human gut metagenome; human gut
762
837
+
Thr
GGT
[ENA]
¢þ
>WENV182842966
OKII01001032
[OKII] human gut metagenome; human gut
869
783
-
Leu
TAA
[ENA]
¢þ
>WENV182842958
OKII01000544
[OKII] human gut metagenome; human gut
871
796
-
Phe
GAA
[ENA]
¢þ
>WENV182842965
OKII01001032
[OKII] human gut metagenome; human gut
954
881
-
Cys
GCA
[ENA]
¢þ
>WENV182842964
OKII01001032
[OKII] human gut metagenome; human gut
1081
1006
-
Gly
GCC
[ENA]
¢þ
>WENV182842960
OKII01000588
[OKII] human gut metagenome; human gut
1081
1157
+
Asp
GTC
[ENA]
¢þ
>WENV182842959
OKII01000585
[OKII] human gut metagenome; human gut
1108
1183
+
Thr
CGT
[ENA]
¢þ
>WENV182842962
OKII01000932
[OKII] human gut metagenome; human gut
1158
1084
-
Gln
CTG
[ENA]
¢þ
>WENV182842957
OKII01000366
[OKII] human gut metagenome; human gut
1319
1392
+
Gly
CCC
[ENA]
¢þ
>WENV182842952
OKII01000209
[OKII] human gut metagenome; human gut
1660
1585
-
Asn
GTT
[ENA]
¢þ
>WENV182842950
OKII01000145
[OKII] human gut metagenome; human gut
2296
2371
+
Val
TAC
[ENA]
¢þ
>WENV182842951
OKII01000145
[OKII] human gut metagenome; human gut
2376
2451
+
Lys
TTT
[ENA]
¢þ
>WENV182842949
OKII01000088
[OKII] human gut metagenome; human gut
2698
2774
+
fMet
CAT
[ENA]
¢þ
>WENV182842948
OKII01000004
[OKII] human gut metagenome; human gut
3436
3511
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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