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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKIL] human gut metagenome; human gut
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182843271
OKIL01000021
[OKIL] human gut metagenome; human gut
57
132
+
Lys
TTT
[ENA]
¢þ
>WENV182843313
OKIL01001355
[OKIL] human gut metagenome; human gut
69
143
+
fMet
CAT
[ENA]
¢þ
>WENV182843276
OKIL01000026
[OKIL] human gut metagenome; human gut
77
1
-
Met
CAT
[ENA]
¢þ
>WENV182843282
OKIL01000052
[OKIL] human gut metagenome; human gut
79
4
-
Val
TAC
[ENA]
¢þ
>WENV182843283
OKIL01000059
[OKIL] human gut metagenome; human gut
97
173
+
Asp
GTC
[ENA]
¢þ
>WENV182843318
OKIL01003278
[OKIL] human gut metagenome; human gut
134
223
+
Ser
GGA
[ENA]
¢þ
>WENV182843305
OKIL01000245
[OKIL] human gut metagenome; human gut
139
65
-
Val
TAC
[ENA]
¢þ
>WENV182843307
OKIL01000461
[OKIL] human gut metagenome; human gut
165
91
-
Arg
CCG
[ENA]
¢þ
>WENV182843309
OKIL01000541
[OKIL] human gut metagenome; human gut
176
90
-
Leu
TAA
[ENA]
¢þ
>WENV182843284
OKIL01000059
[OKIL] human gut metagenome; human gut
182
257
+
Trp
CCA
[ENA]
¢þ
>WENV182843314
OKIL01001411
[OKIL] human gut metagenome; human gut
183
256
+
Gln
CTG
[ENA]
¢þ
>WENV182843316
OKIL01002438
[OKIL] human gut metagenome; human gut
188
262
+
Pro
CGG
[ENA]
¢þ
>WENV182843304
OKIL01000245
[OKIL] human gut metagenome; human gut
246
170
-
Asp
GTC
[ENA]
¢þ
>WENV182843308
OKIL01000541
[OKIL] human gut metagenome; human gut
261
180
-
Tyr
GTA
[ENA]
¢þ
>WENV182843315
OKIL01001411
[OKIL] human gut metagenome; human gut
284
357
+
Lys
TTT
[ENA]
¢þ
>WENV182843303
OKIL01000245
[OKIL] human gut metagenome; human gut
338
265
-
Ile2
CAT
[ENA]
¢þ
>WENV182843317
OKIL01003076
[OKIL] human gut metagenome; human gut
428
501
+
Gly
GCC
[ENA]
¢þ
>WENV182843302
OKIL01000245
[OKIL] human gut metagenome; human gut
445
373
-
Thr
TGT
[ENA]
¢þ
>WENV182843301
OKIL01000245
[OKIL] human gut metagenome; human gut
533
462
-
Glu
TTC
[ENA]
¢þ
>WENV182843300
OKIL01000245
[OKIL] human gut metagenome; human gut
639
567
-
Asn
GTT
[ENA]
¢þ
>WENV182843312
OKIL01000882
[OKIL] human gut metagenome; human gut
743
671
-
Arg
CCT
[ENA]
¢þ
>WENV182843306
OKIL01000287
[OKIL] human gut metagenome; human gut
824
909
+
Leu
CAG
[ENA]
¢þ
>WENV182843310
OKIL01000599
[OKIL] human gut metagenome; human gut
845
921
+
Ile
GAT
[ENA]
¢þ
>WENV182843311
OKIL01000599
[OKIL] human gut metagenome; human gut
964
1039
+
Ala
TGC
[ENA]
¢þ
>WENV182843298
OKIL01000161
[OKIL] human gut metagenome; human gut
1474
1385
-
Ser
CGA
[ENA]
¢þ
>WENV182843262
OKIL01000007
[OKIL] human gut metagenome; human gut
1590
1503
-
Ser
GGA
[ENA]
¢þ
>WENV182843299
OKIL01000170
[OKIL] human gut metagenome; human gut
2238
2163
-
Thr
GGT
[ENA]
¢þ
>WENV182843297
OKIL01000136
[OKIL] human gut metagenome; human gut
2310
2234
-
Ile
GAT
[ENA]
¢þ
>WENV182843280
OKIL01000050
[OKIL] human gut metagenome; human gut
2318
2243
-
Thr
CGT
[ENA]
¢þ
>WENV182843296
OKIL01000136
[OKIL] human gut metagenome; human gut
2445
2371
-
Ala
TGC
[ENA]
¢þ
>WENV182843291
OKIL01000116
[OKIL] human gut metagenome; human gut
2458
2383
-
Asn
GTT
[ENA]
¢þ
>WENV182843281
OKIL01000052
[OKIL] human gut metagenome; human gut
2778
2853
+
Ala
GGC
[ENA]
¢þ
>WENV182843292
OKIL01000125
[OKIL] human gut metagenome; human gut
3501
3576
+
Thr
TGT
[ENA]
¢þ
>WENV182843293
OKIL01000125
[OKIL] human gut metagenome; human gut
3585
3669
+
Tyr
GTA
[ENA]
¢þ
>WENV182843294
OKIL01000125
[OKIL] human gut metagenome; human gut
3786
3860
+
Gly
TCC
[ENA]
¢þ
>WENV182843295
OKIL01000125
[OKIL] human gut metagenome; human gut
3867
3942
+
Thr
GGT
[ENA]
¢þ
>WENV182843278
OKIL01000036
[OKIL] human gut metagenome; human gut
4083
4007
-
Arg
TCT
[ENA]
¢þ
>WENV182843290
OKIL01000086
[OKIL] human gut metagenome; human gut
6653
6737
+
Leu
CAA
[ENA]
¢þ
>WENV182843289
OKIL01000081
[OKIL] human gut metagenome; human gut
8203
8279
+
Asp
GTC
[ENA]
¢þ
>WENV182843288
OKIL01000069
[OKIL] human gut metagenome; human gut
8241
8165
-
Arg
TCT
[ENA]
¢þ
>WENV182843287
OKIL01000069
[OKIL] human gut metagenome; human gut
8331
8255
-
Arg
TCG
[ENA]
¢þ
>WENV182843286
OKIL01000069
[OKIL] human gut metagenome; human gut
8414
8339
-
Ile2
CAT
[ENA]
¢þ
>WENV182843285
OKIL01000060
[OKIL] human gut metagenome; human gut
8606
8680
+
Arg
CCT
[ENA]
¢þ
>WENV182843264
OKIL01000016
[OKIL] human gut metagenome; human gut
9598
9674
+
Arg
CCG
[ENA]
¢þ
>WENV182843265
OKIL01000016
[OKIL] human gut metagenome; human gut
9733
9808
+
His
GTG
[ENA]
¢þ
>WENV182843266
OKIL01000016
[OKIL] human gut metagenome; human gut
9829
9915
+
Leu
CAG
[ENA]
¢þ
>WENV182843267
OKIL01000016
[OKIL] human gut metagenome; human gut
9958
10034
+
Pro
TGG
[ENA]
¢þ
>WENV182843251
OKIL01000003
[OKIL] human gut metagenome; human gut
18888
18963
+
Gly
GCC
[ENA]
¢þ
>WENV182843252
OKIL01000003
[OKIL] human gut metagenome; human gut
19017
19090
+
Cys
GCA
[ENA]
¢þ
>WENV182843253
OKIL01000003
[OKIL] human gut metagenome; human gut
19103
19189
+
Leu
TAA
[ENA]
¢þ
>WENV182843279
OKIL01000039
[OKIL] human gut metagenome; human gut
28903
28978
+
Gly
GCC
[ENA]
¢þ
>WENV182843273
OKIL01000023
[OKIL] human gut metagenome; human gut
29220
29144
-
fMet
CAT
[ENA]
¢þ
>WENV182843270
OKIL01000018
[OKIL] human gut metagenome; human gut
32225
32131
-
SeC
TCA
[ENA]
¢þ
>WENV182843272
OKIL01000023
[OKIL] human gut metagenome; human gut
33087
33001
-
Leu
GAG
[ENA]
¢þ
>WENV182843277
OKIL01000029
[OKIL] human gut metagenome; human gut
37490
37565
+
Ile2
CAT
[ENA]
¢þ
>WENV182843260
OKIL01000005
[OKIL] human gut metagenome; human gut
50539
50626
+
Ser
TGA
[ENA]
¢þ
>WENV182843259
OKIL01000004
[OKIL] human gut metagenome; human gut
52481
52405
-
Arg
ACG
[ENA]
¢þ
>WENV182843258
OKIL01000004
[OKIL] human gut metagenome; human gut
52620
52544
-
Arg
ACG
[ENA]
¢þ
>WENV182843257
OKIL01000004
[OKIL] human gut metagenome; human gut
52716
52624
-
Ser
GCT
[ENA]
¢þ
>WENV182843263
OKIL01000009
[OKIL] human gut metagenome; human gut
56550
56477
-
Gly
CCC
[ENA]
¢þ
>WENV182843275
OKIL01000026
[OKIL] human gut metagenome; human gut
72550
72625
+
Lys
TTT
[ENA]
¢þ
>WENV182843274
OKIL01000024
[OKIL] human gut metagenome; human gut
73554
73470
-
Tyr
GTA
[ENA]
¢þ
>WENV182843269
OKIL01000017
[OKIL] human gut metagenome; human gut
86438
86364
-
Gln
CTG
[ENA]
¢þ
>WENV182843268
OKIL01000017
[OKIL] human gut metagenome; human gut
86563
86487
-
Met
CAT
[ENA]
¢þ
>WENV182843261
OKIL01000005
[OKIL] human gut metagenome; human gut
145845
145932
+
Ser
GGA
[ENA]
¢þ
>WENV182843249
OKIL01000001
[OKIL] human gut metagenome; human gut
165209
165285
+
Pro
GGG
[ENA]
¢þ
>WENV182843256
OKIL01000004
[OKIL] human gut metagenome; human gut
173544
173620
+
fMet
CAT
[ENA]
¢þ
>WENV182843250
OKIL01000002
[OKIL] human gut metagenome; human gut
245202
245126
-
Pro
CGG
[ENA]
¢þ
>WENV182843255
OKIL01000003
[OKIL] human gut metagenome; human gut
257021
256945
-
Val
GAC
[ENA]
¢þ
>WENV182843254
OKIL01000003
[OKIL] human gut metagenome; human gut
257102
257026
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK