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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKIZ] human gut metagenome; human gut
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182845062
OKIZ01000203
[OKIZ] human gut metagenome; human gut
6
100
+
SeC
TCA
[ENA]
¢þ
>WENV182845099
OKIZ01000651
[OKIZ] human gut metagenome; human gut
17
91
+
Gln
CTG
[ENA]
¢þ
>WENV182845107
OKIZ01000829
[OKIZ] human gut metagenome; human gut
75
1
-
Ala
GGC
[ENA]
¢þ
>WENV182845109
OKIZ01001083
[OKIZ] human gut metagenome; human gut
98
173
+
Trp
CCA
[ENA]
¢þ
>WENV182845056
OKIZ01000156
[OKIZ] human gut metagenome; human gut
100
175
+
Trp
CCA
[ENA]
¢þ
>WENV182845092
OKIZ01000383
[OKIZ] human gut metagenome; human gut
131
205
+
Gln
CTG
[ENA]
¢þ
>WENV182845102
OKIZ01000708
[OKIZ] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182845112
OKIZ01001501
[OKIZ] human gut metagenome; human gut
160
235
+
Ala
TGC
[ENA]
¢þ
>WENV182845075
OKIZ01000253
[OKIZ] human gut metagenome; human gut
346
271
-
Lys
TTT
[ENA]
¢þ
>WENV182845111
OKIZ01001454
[OKIZ] human gut metagenome; human gut
415
340
-
Ala
TGC
[ENA]
¢þ
>WENV182845074
OKIZ01000253
[OKIZ] human gut metagenome; human gut
426
351
-
Val
TAC
[ENA]
¢þ
>WENV182845110
OKIZ01001454
[OKIZ] human gut metagenome; human gut
547
471
-
Ile
GAT
[ENA]
¢þ
>WENV182845073
OKIZ01000253
[OKIZ] human gut metagenome; human gut
548
473
-
Val
TAC
[ENA]
¢þ
>WENV182845072
OKIZ01000253
[OKIZ] human gut metagenome; human gut
670
595
-
Val
TAC
[ENA]
¢þ
>WENV182845096
OKIZ01000552
[OKIZ] human gut metagenome; human gut
1226
1150
-
Arg
TCT
[ENA]
¢þ
>WENV182845108
OKIZ01000858
[OKIZ] human gut metagenome; human gut
1525
1436
-
Ser
CGA
[ENA]
¢þ
>WENV182845093
OKIZ01000430
[OKIZ] human gut metagenome; human gut
1810
1886
+
Pro
GGG
[ENA]
¢þ
>WENV182845106
OKIZ01000775
[OKIZ] human gut metagenome; human gut
1844
1769
-
Asn
GTT
[ENA]
¢þ
>WENV182845101
OKIZ01000700
[OKIZ] human gut metagenome; human gut
1923
1837
-
Leu
GAG
[ENA]
¢þ
>WENV182845058
OKIZ01000177
[OKIZ] human gut metagenome; human gut
2023
1948
-
Ile2
CAT
[ENA]
¢þ
>WENV182845012
OKIZ01000016
[OKIZ] human gut metagenome; human gut
2116
2040
-
Pro
GGG
[ENA]
¢þ
>WENV182845100
OKIZ01000677
[OKIZ] human gut metagenome; human gut
2458
2371
-
Ser
GGA
[ENA]
¢þ
>WENV182845097
OKIZ01000623
[OKIZ] human gut metagenome; human gut
2472
2558
+
Leu
GAG
[ENA]
¢þ
>WENV182845103
OKIZ01000711
[OKIZ] human gut metagenome; human gut
2629
2704
+
Ile2
CAT
[ENA]
¢þ
>WENV182845104
OKIZ01000711
[OKIZ] human gut metagenome; human gut
2714
2790
+
Arg
TCG
[ENA]
¢þ
>WENV182845105
OKIZ01000711
[OKIZ] human gut metagenome; human gut
2805
2881
+
Arg
TCT
[ENA]
¢þ
>WENV182845066
OKIZ01000234
[OKIZ] human gut metagenome; human gut
2895
2811
-
Leu
CAA
[ENA]
¢þ
>WENV182845098
OKIZ01000629
[OKIZ] human gut metagenome; human gut
2999
3075
+
Asp
GTC
[ENA]
¢þ
>WENV182845034
OKIZ01000085
[OKIZ] human gut metagenome; human gut
3207
3135
-
Arg
CCT
[ENA]
¢þ
>WENV182845061
OKIZ01000202
[OKIZ] human gut metagenome; human gut
3365
3290
-
Phe
GAA
[ENA]
¢þ
>WENV182845069
OKIZ01000253
[OKIZ] human gut metagenome; human gut
3379
3454
+
Ala
GGC
[ENA]
¢þ
>WENV182845070
OKIZ01000253
[OKIZ] human gut metagenome; human gut
3496
3571
+
Ala
GGC
[ENA]
¢þ
>WENV182845095
OKIZ01000509
[OKIZ] human gut metagenome; human gut
3908
3822
-
Leu
GAG
[ENA]
¢þ
>WENV182845090
OKIZ01000342
[OKIZ] human gut metagenome; human gut
4361
4274
-
Ser
TGA
[ENA]
¢þ
>WENV182845059
OKIZ01000186
[OKIZ] human gut metagenome; human gut
5102
5015
-
Ser
GGA
[ENA]
¢þ
>WENV182845057
OKIZ01000173
[OKIZ] human gut metagenome; human gut
5685
5760
+
Ile2
CAT
[ENA]
¢þ
>WENV182845063
OKIZ01000210
[OKIZ] human gut metagenome; human gut
6382
6457
+
Thr
TGT
[ENA]
¢þ
>WENV182845060
OKIZ01000201
[OKIZ] human gut metagenome; human gut
6986
6892
-
SeC
TCA
[ENA]
¢þ
>WENV182845064
OKIZ01000216
[OKIZ] human gut metagenome; human gut
8200
8276
+
Asp
GTC
[ENA]
¢þ
>WENV182845094
OKIZ01000442
[OKIZ] human gut metagenome; human gut
9474
9549
+
Phe
GAA
[ENA]
¢þ
>WENV182845091
OKIZ01000361
[OKIZ] human gut metagenome; human gut
11621
11546
-
Asn
GTT
[ENA]
¢þ
>WENV182845084
OKIZ01000284
[OKIZ] human gut metagenome; human gut
12022
11947
-
Phe
GAA
[ENA]
¢þ
>WENV182845079
OKIZ01000276
[OKIZ] human gut metagenome; human gut
14846
14922
+
Pro
TGG
[ENA]
¢þ
>WENV182845076
OKIZ01000262
[OKIZ] human gut metagenome; human gut
15462
15546
+
Leu
CAA
[ENA]
¢þ
>WENV182845088
OKIZ01000315
[OKIZ] human gut metagenome; human gut
15520
15596
+
Arg
TCT
[ENA]
¢þ
>WENV182845068
OKIZ01000240
[OKIZ] human gut metagenome; human gut
15645
15570
-
Asn
GTT
[ENA]
¢þ
>WENV182845042
OKIZ01000100
[OKIZ] human gut metagenome; human gut
16464
16388
-
Val
GAC
[ENA]
¢þ
>WENV182845041
OKIZ01000100
[OKIZ] human gut metagenome; human gut
16545
16469
-
Val
GAC
[ENA]
¢þ
>WENV182845005
OKIZ01000006
[OKIZ] human gut metagenome; human gut
16557
16644
+
Ser
GGA
[ENA]
¢þ
>WENV182845043
OKIZ01000106
[OKIZ] human gut metagenome; human gut
17304
17391
+
Ser
GGA
[ENA]
¢þ
>WENV182845067
OKIZ01000240
[OKIZ] human gut metagenome; human gut
17404
17479
+
Asn
GTT
[ENA]
¢þ
>WENV182845087
OKIZ01000306
[OKIZ] human gut metagenome; human gut
18452
18376
-
Arg
TCT
[ENA]
¢þ
>WENV182845045
OKIZ01000110
[OKIZ] human gut metagenome; human gut
18506
18581
+
Thr
CGT
[ENA]
¢þ
>WENV182845086
OKIZ01000306
[OKIZ] human gut metagenome; human gut
18542
18466
-
Arg
TCG
[ENA]
¢þ
>WENV182845085
OKIZ01000306
[OKIZ] human gut metagenome; human gut
18625
18550
-
Ile2
CAT
[ENA]
¢þ
>WENV182845065
OKIZ01000231
[OKIZ] human gut metagenome; human gut
19008
19095
+
Ser
TGA
[ENA]
¢þ
>WENV182845015
OKIZ01000023
[OKIZ] human gut metagenome; human gut
19493
19569
+
Asp
GTC
[ENA]
¢þ
>WENV182845078
OKIZ01000271
[OKIZ] human gut metagenome; human gut
19547
19622
+
Asn
GTT
[ENA]
¢þ
>WENV182845089
OKIZ01000324
[OKIZ] human gut metagenome; human gut
19694
19619
-
Trp
CCA
[ENA]
¢þ
>WENV182845044
OKIZ01000106
[OKIZ] human gut metagenome; human gut
20277
20364
+
Ser
GGA
[ENA]
¢þ
>WENV182845071
OKIZ01000253
[OKIZ] human gut metagenome; human gut
21835
21763
-
Arg
CCT
[ENA]
¢þ
>WENV182845077
OKIZ01000266
[OKIZ] human gut metagenome; human gut
22413
22337
-
Pro
GGG
[ENA]
¢þ
>WENV182845080
OKIZ01000276
[OKIZ] human gut metagenome; human gut
22560
22635
+
Thr
TGT
[ENA]
¢þ
>WENV182845081
OKIZ01000276
[OKIZ] human gut metagenome; human gut
22644
22728
+
Tyr
GTA
[ENA]
¢þ
>WENV182845082
OKIZ01000276
[OKIZ] human gut metagenome; human gut
22845
22919
+
Gly
TCC
[ENA]
¢þ
>WENV182845083
OKIZ01000276
[OKIZ] human gut metagenome; human gut
22926
23001
+
Thr
GGT
[ENA]
¢þ
>WENV182845036
OKIZ01000091
[OKIZ] human gut metagenome; human gut
23293
23217
-
Arg
TCT
[ENA]
¢þ
>WENV182845048
OKIZ01000130
[OKIZ] human gut metagenome; human gut
23553
23478
-
Asn
GTT
[ENA]
¢þ
>WENV182845047
OKIZ01000130
[OKIZ] human gut metagenome; human gut
25329
25404
+
Asn
GTT
[ENA]
¢þ
>WENV182845033
OKIZ01000064
[OKIZ] human gut metagenome; human gut
26004
26088
+
Leu
CAA
[ENA]
¢þ
>WENV182845055
OKIZ01000154
[OKIZ] human gut metagenome; human gut
27964
27889
-
Phe
GAA
[ENA]
¢þ
>WENV182845027
OKIZ01000043
[OKIZ] human gut metagenome; human gut
28355
28279
-
Arg
TCT
[ENA]
¢þ
>WENV182845046
OKIZ01000121
[OKIZ] human gut metagenome; human gut
28803
28878
+
Phe
GAA
[ENA]
¢þ
>WENV182845054
OKIZ01000148
[OKIZ] human gut metagenome; human gut
31122
31047
-
Arg
TCT
[ENA]
¢þ
>WENV182845053
OKIZ01000148
[OKIZ] human gut metagenome; human gut
31199
31125
-
Thr
TGT
[ENA]
¢þ
>WENV182845052
OKIZ01000148
[OKIZ] human gut metagenome; human gut
31279
31205
-
Asn
GTT
[ENA]
¢þ
>WENV182845050
OKIZ01000142
[OKIZ] human gut metagenome; human gut
31803
31729
-
Thr
TGT
[ENA]
¢þ
>WENV182845049
OKIZ01000142
[OKIZ] human gut metagenome; human gut
31883
31809
-
Asn
GTT
[ENA]
¢þ
>WENV182845031
OKIZ01000051
[OKIZ] human gut metagenome; human gut
33672
33766
+
SeC
TCA
[ENA]
¢þ
>WENV182845051
OKIZ01000147
[OKIZ] human gut metagenome; human gut
38189
38100
-
Ser
CGA
[ENA]
¢þ
>WENV182845024
OKIZ01000036
[OKIZ] human gut metagenome; human gut
38643
38568
-
Asn
GTT
[ENA]
¢þ
>WENV182845023
OKIZ01000036
[OKIZ] human gut metagenome; human gut
41052
40977
-
Asn
GTT
[ENA]
¢þ
>WENV182845035
OKIZ01000086
[OKIZ] human gut metagenome; human gut
41107
41031
-
Pro
CGG
[ENA]
¢þ
>WENV182845022
OKIZ01000036
[OKIZ] human gut metagenome; human gut
42801
42876
+
Asn
GTT
[ENA]
¢þ
>WENV182845026
OKIZ01000040
[OKIZ] human gut metagenome; human gut
47617
47711
+
SeC
TCA
[ENA]
¢þ
>WENV182845004
OKIZ01000005
[OKIZ] human gut metagenome; human gut
49051
48975
-
Val
GAC
[ENA]
¢þ
>WENV182845003
OKIZ01000005
[OKIZ] human gut metagenome; human gut
49132
49056
-
Val
GAC
[ENA]
¢þ
>WENV182845037
OKIZ01000096
[OKIZ] human gut metagenome; human gut
52668
52744
+
Met
CAT
[ENA]
¢þ
>WENV182845038
OKIZ01000096
[OKIZ] human gut metagenome; human gut
52753
52837
+
Leu
TAG
[ENA]
¢þ
>WENV182845039
OKIZ01000096
[OKIZ] human gut metagenome; human gut
52861
52935
+
Gln
TTG
[ENA]
¢þ
>WENV182845040
OKIZ01000096
[OKIZ] human gut metagenome; human gut
52959
53035
+
Met
CAT
[ENA]
¢þ
>WENV182845013
OKIZ01000017
[OKIZ] human gut metagenome; human gut
53913
54000
+
Ser
GGA
[ENA]
¢þ
>WENV182845029
OKIZ01000047
[OKIZ] human gut metagenome; human gut
56357
56284
-
Thr
CGT
[ENA]
¢þ
>WENV182845028
OKIZ01000044
[OKIZ] human gut metagenome; human gut
58783
58858
+
Phe
GAA
[ENA]
¢þ
>WENV182845030
OKIZ01000049
[OKIZ] human gut metagenome; human gut
62238
62311
+
Arg
CCT
[ENA]
¢þ
>WENV182845017
OKIZ01000025
[OKIZ] human gut metagenome; human gut
62869
62943
+
Arg
CCT
[ENA]
¢þ
>WENV182845032
OKIZ01000054
[OKIZ] human gut metagenome; human gut
72339
72264
-
Ile2
CAT
[ENA]
¢þ
>WENV182845021
OKIZ01000029
[OKIZ] human gut metagenome; human gut
73542
73458
-
Tyr
GTA
[ENA]
¢þ
>WENV182845010
OKIZ01000010
[OKIZ] human gut metagenome; human gut
75713
75627
-
Leu
TAA
[ENA]
¢þ
>WENV182845009
OKIZ01000010
[OKIZ] human gut metagenome; human gut
75800
75727
-
Cys
GCA
[ENA]
¢þ
>WENV182845008
OKIZ01000010
[OKIZ] human gut metagenome; human gut
75916
75841
-
Gly
GCC
[ENA]
¢þ
>WENV182845011
OKIZ01000012
[OKIZ] human gut metagenome; human gut
77986
77913
-
Gly
CCC
[ENA]
¢þ
>WENV182845016
OKIZ01000023
[OKIZ] human gut metagenome; human gut
79282
79207
-
Thr
CGT
[ENA]
¢þ
>WENV182845025
OKIZ01000039
[OKIZ] human gut metagenome; human gut
83893
83820
-
Gly
CCC
[ENA]
¢þ
>WENV182845020
OKIZ01000026
[OKIZ] human gut metagenome; human gut
86547
86461
-
Leu
CAG
[ENA]
¢þ
>WENV182845019
OKIZ01000026
[OKIZ] human gut metagenome; human gut
86665
86579
-
Leu
CAG
[ENA]
¢þ
>WENV182845018
OKIZ01000026
[OKIZ] human gut metagenome; human gut
86783
86697
-
Leu
CAG
[ENA]
¢þ
>WENV182845007
OKIZ01000010
[OKIZ] human gut metagenome; human gut
97117
97028
-
Ser
CGA
[ENA]
¢þ
>WENV182845006
OKIZ01000010
[OKIZ] human gut metagenome; human gut
98109
98184
+
Asn
GTT
[ENA]
¢þ
>WENV182845014
OKIZ01000017
[OKIZ] human gut metagenome; human gut
106027
106114
+
Ser
TGA
[ENA]
¢þ
>WENV182845002
OKIZ01000001
[OKIZ] human gut metagenome; human gut
157104
157028
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK