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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKKF] human gut metagenome; human gut
HIT:
93 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182848115
OKKF01000094
[OKKF] human gut metagenome; human gut
83
157
+
Asn
GTT
[ENA]
¢þ
>WENV182848117
OKKF01000104
[OKKF] human gut metagenome; human gut
93
167
+
Gln
CTG
[ENA]
¢þ
>WENV182848154
OKKF01000434
[OKKF] human gut metagenome; human gut
97
172
+
Glu
TTC
[ENA]
¢þ
>WENV182848145
OKKF01000270
[OKKF] human gut metagenome; human gut
118
194
+
Arg
ACG
[ENA]
¢þ
>WENV182848141
OKKF01000227
[OKKF] human gut metagenome; human gut
166
91
-
Lys
TTT
[ENA]
¢þ
>WENV182848073
OKKF01000007
[OKKF] human gut metagenome; human gut
172
88
-
Tyr
GTA
[ENA]
¢þ
>WENV182848153
OKKF01000421
[OKKF] human gut metagenome; human gut
734
810
+
Met
CAT
[ENA]
¢þ
>WENV182848131
OKKF01000159
[OKKF] human gut metagenome; human gut
834
749
-
Ser
TGA
[ENA]
¢þ
>WENV182848144
OKKF01000254
[OKKF] human gut metagenome; human gut
992
1067
+
Phe
GAA
[ENA]
¢þ
>WENV182848130
OKKF01000154
[OKKF] human gut metagenome; human gut
993
917
-
Arg
TCT
[ENA]
¢þ
>WENV182848148
OKKF01000287
[OKKF] human gut metagenome; human gut
2616
2543
-
Lys
TTT
[ENA]
¢þ
>WENV182848140
OKKF01000221
[OKKF] human gut metagenome; human gut
2647
2571
-
Asp
GTC
[ENA]
¢þ
>WENV182848147
OKKF01000272
[OKKF] human gut metagenome; human gut
2966
2892
-
Ala
TGC
[ENA]
¢þ
>WENV182848146
OKKF01000272
[OKKF] human gut metagenome; human gut
3071
2995
-
Ile
GAT
[ENA]
¢þ
>WENV182848149
OKKF01000292
[OKKF] human gut metagenome; human gut
3475
3550
+
Thr
TGT
[ENA]
¢þ
>WENV182848150
OKKF01000292
[OKKF] human gut metagenome; human gut
3559
3643
+
Tyr
GTA
[ENA]
¢þ
>WENV182848151
OKKF01000292
[OKKF] human gut metagenome; human gut
3760
3834
+
Gly
TCC
[ENA]
¢þ
>WENV182848152
OKKF01000292
[OKKF] human gut metagenome; human gut
3841
3916
+
Thr
GGT
[ENA]
¢þ
>WENV182848135
OKKF01000178
[OKKF] human gut metagenome; human gut
3947
4021
+
Asp
GTC
[ENA]
¢þ
>WENV182848127
OKKF01000139
[OKKF] human gut metagenome; human gut
6466
6383
-
Tyr
GTA
[ENA]
¢þ
>WENV182848139
OKKF01000214
[OKKF] human gut metagenome; human gut
6961
7045
+
Leu
CAA
[ENA]
¢þ
>WENV182848142
OKKF01000228
[OKKF] human gut metagenome; human gut
7801
7873
+
Arg
CCT
[ENA]
¢þ
>WENV182848129
OKKF01000152
[OKKF] human gut metagenome; human gut
8090
8015
-
Thr
CGT
[ENA]
¢þ
>WENV182848143
OKKF01000237
[OKKF] human gut metagenome; human gut
8568
8642
+
Asn
GTT
[ENA]
¢þ
>WENV182848101
OKKF01000062
[OKKF] human gut metagenome; human gut
8647
8721
+
Arg
CCT
[ENA]
¢þ
>WENV182848111
OKKF01000076
[OKKF] human gut metagenome; human gut
9339
9264
-
Phe
GAA
[ENA]
¢þ
>WENV182848136
OKKF01000186
[OKKF] human gut metagenome; human gut
9345
9272
-
Phe
GAA
[ENA]
¢þ
>WENV182848122
OKKF01000126
[OKKF] human gut metagenome; human gut
10439
10368
-
Gln
TTG
[ENA]
¢þ
>WENV182848138
OKKF01000209
[OKKF] human gut metagenome; human gut
12225
12307
+
Leu
TAG
[ENA]
¢þ
>WENV182848132
OKKF01000164
[OKKF] human gut metagenome; human gut
12840
12916
+
Pro
CGG
[ENA]
¢þ
>WENV182848137
OKKF01000197
[OKKF] human gut metagenome; human gut
13396
13480
+
Leu
CAA
[ENA]
¢þ
>WENV182848092
OKKF01000031
[OKKF] human gut metagenome; human gut
13592
13668
+
Val
GAC
[ENA]
¢þ
>WENV182848093
OKKF01000031
[OKKF] human gut metagenome; human gut
13673
13749
+
Val
GAC
[ENA]
¢þ
>WENV182848104
OKKF01000064
[OKKF] human gut metagenome; human gut
13912
13837
-
Val
TAC
[ENA]
¢þ
>WENV182848126
OKKF01000136
[OKKF] human gut metagenome; human gut
14347
14422
+
Ile2
CAT
[ENA]
¢þ
>WENV182848128
OKKF01000148
[OKKF] human gut metagenome; human gut
14435
14362
-
Gly
CCC
[ENA]
¢þ
>WENV182848134
OKKF01000177
[OKKF] human gut metagenome; human gut
15955
15882
-
Thr
CGT
[ENA]
¢þ
>WENV182848133
OKKF01000166
[OKKF] human gut metagenome; human gut
18821
18906
+
Ser
TGA
[ENA]
¢þ
>WENV182848125
OKKF01000133
[OKKF] human gut metagenome; human gut
18915
18989
+
Ile2
CAT
[ENA]
¢þ
>WENV182848112
OKKF01000084
[OKKF] human gut metagenome; human gut
20642
20570
-
Glu
TTC
[ENA]
¢þ
>WENV182848114
OKKF01000092
[OKKF] human gut metagenome; human gut
22630
22555
-
Thr
TGT
[ENA]
¢þ
>WENV182848113
OKKF01000092
[OKKF] human gut metagenome; human gut
22710
22636
-
Asn
GTT
[ENA]
¢þ
>WENV182848121
OKKF01000112
[OKKF] human gut metagenome; human gut
23857
23781
-
fMet
CAT
[ENA]
¢þ
>WENV182848109
OKKF01000072
[OKKF] human gut metagenome; human gut
23864
23939
+
Pro
TGG
[ENA]
¢þ
>WENV182848089
OKKF01000025
[OKKF] human gut metagenome; human gut
24145
24072
-
Trp
CCA
[ENA]
¢þ
>WENV182848087
OKKF01000015
[OKKF] human gut metagenome; human gut
25728
25816
+
Ser
GGA
[ENA]
¢þ
>WENV182848118
OKKF01000108
[OKKF] human gut metagenome; human gut
26326
26400
+
Thr
TGT
[ENA]
¢þ
>WENV182848123
OKKF01000131
[OKKF] human gut metagenome; human gut
27188
27280
+
Ser
GCT
[ENA]
¢þ
>WENV182848124
OKKF01000131
[OKKF] human gut metagenome; human gut
27284
27360
+
Arg
ACG
[ENA]
¢þ
>WENV182848120
OKKF01000112
[OKKF] human gut metagenome; human gut
27724
27638
-
Leu
GAG
[ENA]
¢þ
>WENV182848105
OKKF01000070
[OKKF] human gut metagenome; human gut
29795
29869
+
Thr
TGT
[ENA]
¢þ
>WENV182848106
OKKF01000070
[OKKF] human gut metagenome; human gut
29943
30026
+
Tyr
GTA
[ENA]
¢þ
>WENV182848107
OKKF01000070
[OKKF] human gut metagenome; human gut
30140
30212
+
Thr
GGT
[ENA]
¢þ
>WENV182848119
OKKF01000110
[OKKF] human gut metagenome; human gut
30344
30416
+
Cys
GCA
[ENA]
¢þ
>WENV182848068
OKKF01000002
[OKKF] human gut metagenome; human gut
30827
30752
-
Asn
GTT
[ENA]
¢þ
>WENV182848108
OKKF01000070
[OKKF] human gut metagenome; human gut
31500
31573
+
Trp
CCA
[ENA]
¢þ
>WENV182848064
OKKF01000002
[OKKF] human gut metagenome; human gut
31819
31908
+
Ser
CGA
[ENA]
¢þ
>WENV182848116
OKKF01000101
[OKKF] human gut metagenome; human gut
32646
32720
+
Arg
TCT
[ENA]
¢þ
>WENV182848090
OKKF01000026
[OKKF] human gut metagenome; human gut
35537
35450
-
Ser
TGA
[ENA]
¢þ
>WENV182848062
OKKF01000001
[OKKF] human gut metagenome; human gut
36703
36777
+
His
GTG
[ENA]
¢þ
>WENV182848100
OKKF01000052
[OKKF] human gut metagenome; human gut
38709
38782
+
fMet
CAT
[ENA]
¢þ
>WENV182848097
OKKF01000049
[OKKF] human gut metagenome; human gut
39369
39456
+
Ser
GCT
[ENA]
¢þ
>WENV182848098
OKKF01000049
[OKKF] human gut metagenome; human gut
39534
39606
+
Glu
CTC
[ENA]
¢þ
>WENV182848110
OKKF01000072
[OKKF] human gut metagenome; human gut
42122
42195
+
Lys
CTT
[ENA]
¢þ
>WENV182848103
OKKF01000062
[OKKF] human gut metagenome; human gut
48887
48812
-
Ala
GGC
[ENA]
¢þ
>WENV182848102
OKKF01000062
[OKKF] human gut metagenome; human gut
49002
48927
-
Ala
GGC
[ENA]
¢þ
>WENV182848086
OKKF01000013
[OKKF] human gut metagenome; human gut
52904
52829
-
Pro
GGG
[ENA]
¢þ
>WENV182848096
OKKF01000033
[OKKF] human gut metagenome; human gut
54071
53996
-
Asn
GTT
[ENA]
¢þ
>WENV182848099
OKKF01000050
[OKKF] human gut metagenome; human gut
54880
54793
-
Ser
GGA
[ENA]
¢þ
>WENV182848095
OKKF01000033
[OKKF] human gut metagenome; human gut
56480
56405
-
Asn
GTT
[ENA]
¢þ
>WENV182848094
OKKF01000033
[OKKF] human gut metagenome; human gut
58229
58304
+
Asn
GTT
[ENA]
¢þ
>WENV182848088
OKKF01000023
[OKKF] human gut metagenome; human gut
74778
74705
-
Lys
TTT
[ENA]
¢þ
>WENV182848091
OKKF01000029
[OKKF] human gut metagenome; human gut
74957
74873
-
Tyr
GTA
[ENA]
¢þ
>WENV182848072
OKKF01000006
[OKKF] human gut metagenome; human gut
77241
77314
+
Gly
CCC
[ENA]
¢þ
>WENV182848079
OKKF01000009
[OKKF] human gut metagenome; human gut
77971
77895
-
Pro
TGG
[ENA]
¢þ
>WENV182848078
OKKF01000009
[OKKF] human gut metagenome; human gut
78100
78014
-
Leu
CAG
[ENA]
¢þ
>WENV182848077
OKKF01000009
[OKKF] human gut metagenome; human gut
78196
78121
-
His
GTG
[ENA]
¢þ
>WENV182848076
OKKF01000009
[OKKF] human gut metagenome; human gut
78331
78255
-
Arg
CCG
[ENA]
¢þ
>WENV182848080
OKKF01000011
[OKKF] human gut metagenome; human gut
79365
79438
+
Phe
GAA
[ENA]
¢þ
>WENV182848081
OKKF01000011
[OKKF] human gut metagenome; human gut
79450
79523
+
Pro
CGG
[ENA]
¢þ
>WENV182848065
OKKF01000002
[OKKF] human gut metagenome; human gut
84594
84669
+
Gly
GCC
[ENA]
¢þ
>WENV182848066
OKKF01000002
[OKKF] human gut metagenome; human gut
84723
84796
+
Cys
GCA
[ENA]
¢þ
>WENV182848067
OKKF01000002
[OKKF] human gut metagenome; human gut
84809
84895
+
Leu
TAA
[ENA]
¢þ
>WENV182848083
OKKF01000011
[OKKF] human gut metagenome; human gut
91236
91152
-
Leu
TAA
[ENA]
¢þ
>WENV182848082
OKKF01000011
[OKKF] human gut metagenome; human gut
91323
91250
-
Gly
GCC
[ENA]
¢þ
>WENV182848070
OKKF01000004
[OKKF] human gut metagenome; human gut
94361
94285
-
Pro
GGG
[ENA]
¢þ
>WENV182848063
OKKF01000001
[OKKF] human gut metagenome; human gut
95283
95357
+
Ala
GGC
[ENA]
¢þ
>WENV182848085
OKKF01000013
[OKKF] human gut metagenome; human gut
97515
97586
+
Gln
CTG
[ENA]
¢þ
>WENV182848084
OKKF01000012
[OKKF] human gut metagenome; human gut
98707
98794
+
Ser
GGA
[ENA]
¢þ
>WENV182848071
OKKF01000005
[OKKF] human gut metagenome; human gut
101556
101462
-
SeC
TCA
[ENA]
¢þ
>WENV182848069
OKKF01000003
[OKKF] human gut metagenome; human gut
112788
112864
+
Arg
TCT
[ENA]
¢þ
>WENV182848075
OKKF01000009
[OKKF] human gut metagenome; human gut
112875
112800
-
Trp
CCA
[ENA]
¢þ
>WENV182848074
OKKF01000009
[OKKF] human gut metagenome; human gut
112960
112884
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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