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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKLG] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182850821
OKLG01000049
[OKLG] human gut metagenome; human gut
2
76
+
Gln
CTG
[ENA]
¢þ
>WENV182850858
OKLG01000432
[OKLG] human gut metagenome; human gut
42
118
+
Arg
TCT
[ENA]
¢þ
>WENV182850845
OKLG01000302
[OKLG] human gut metagenome; human gut
106
182
+
Arg
ACG
[ENA]
¢þ
>WENV182850849
OKLG01000311
[OKLG] human gut metagenome; human gut
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182850848
OKLG01000311
[OKLG] human gut metagenome; human gut
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182850830
OKLG01000108
[OKLG] human gut metagenome; human gut
464
389
-
Lys
TTT
[ENA]
¢þ
>WENV182850829
OKLG01000108
[OKLG] human gut metagenome; human gut
544
469
-
Val
TAC
[ENA]
¢þ
>WENV182850820
OKLG01000040
[OKLG] human gut metagenome; human gut
646
557
-
Ser
CGA
[ENA]
¢þ
>WENV182850847
OKLG01000311
[OKLG] human gut metagenome; human gut
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182850856
OKLG01000375
[OKLG] human gut metagenome; human gut
678
602
-
Val
GAC
[ENA]
¢þ
>WENV182850846
OKLG01000311
[OKLG] human gut metagenome; human gut
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182850855
OKLG01000375
[OKLG] human gut metagenome; human gut
759
683
-
Val
GAC
[ENA]
¢þ
>WENV182850857
OKLG01000414
[OKLG] human gut metagenome; human gut
1059
1134
+
Thr
CGT
[ENA]
¢þ
>WENV182850854
OKLG01000354
[OKLG] human gut metagenome; human gut
1355
1268
-
Ser
GGA
[ENA]
¢þ
>WENV182850819
OKLG01000040
[OKLG] human gut metagenome; human gut
1638
1713
+
Asn
GTT
[ENA]
¢þ
>WENV182850837
OKLG01000158
[OKLG] human gut metagenome; human gut
1769
1693
-
Asp
GTC
[ENA]
¢þ
>WENV182850825
OKLG01000097
[OKLG] human gut metagenome; human gut
2065
1981
-
Tyr
GTA
[ENA]
¢þ
>WENV182850853
OKLG01000327
[OKLG] human gut metagenome; human gut
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV182850816
OKLG01000022
[OKLG] human gut metagenome; human gut
2919
2995
+
Pro
CGG
[ENA]
¢þ
>WENV182850828
OKLG01000108
[OKLG] human gut metagenome; human gut
3243
3318
+
Ala
GGC
[ENA]
¢þ
>WENV182850842
OKLG01000223
[OKLG] human gut metagenome; human gut
3527
3441
-
Leu
GAG
[ENA]
¢þ
>WENV182850850
OKLG01000326
[OKLG] human gut metagenome; human gut
3579
3654
+
Lys
TTT
[ENA]
¢þ
>WENV182850851
OKLG01000326
[OKLG] human gut metagenome; human gut
3690
3765
+
Val
TAC
[ENA]
¢þ
>WENV182850852
OKLG01000326
[OKLG] human gut metagenome; human gut
3769
3844
+
Lys
TTT
[ENA]
¢þ
>WENV182850835
OKLG01000148
[OKLG] human gut metagenome; human gut
4836
4760
-
Pro
TGG
[ENA]
¢þ
>WENV182850834
OKLG01000148
[OKLG] human gut metagenome; human gut
4965
4879
-
Leu
CAG
[ENA]
¢þ
>WENV182850833
OKLG01000148
[OKLG] human gut metagenome; human gut
5061
4986
-
His
GTG
[ENA]
¢þ
>WENV182850844
OKLG01000261
[OKLG] human gut metagenome; human gut
5161
5085
-
fMet
CAT
[ENA]
¢þ
>WENV182850832
OKLG01000148
[OKLG] human gut metagenome; human gut
5196
5120
-
Arg
CCG
[ENA]
¢þ
>WENV182850841
OKLG01000190
[OKLG] human gut metagenome; human gut
5328
5242
-
Leu
TAA
[ENA]
¢þ
>WENV182850840
OKLG01000190
[OKLG] human gut metagenome; human gut
5414
5341
-
Cys
GCA
[ENA]
¢þ
>WENV182850839
OKLG01000190
[OKLG] human gut metagenome; human gut
5543
5468
-
Gly
GCC
[ENA]
¢þ
>WENV182850838
OKLG01000179
[OKLG] human gut metagenome; human gut
5723
5647
-
fMet
CAT
[ENA]
¢þ
>WENV182850843
OKLG01000230
[OKLG] human gut metagenome; human gut
6109
6022
-
Ser
TGA
[ENA]
¢þ
>WENV182850823
OKLG01000056
[OKLG] human gut metagenome; human gut
8545
8471
-
Arg
CCT
[ENA]
¢þ
>WENV182850827
OKLG01000106
[OKLG] human gut metagenome; human gut
9729
9816
+
Ser
GGA
[ENA]
¢þ
>WENV182850836
OKLG01000158
[OKLG] human gut metagenome; human gut
9994
9918
-
Asp
GTC
[ENA]
¢þ
>WENV182850831
OKLG01000122
[OKLG] human gut metagenome; human gut
12277
12352
+
Thr
TGT
[ENA]
¢þ
>WENV182850817
OKLG01000035
[OKLG] human gut metagenome; human gut
12493
12409
-
Leu
CAA
[ENA]
¢þ
>WENV182850824
OKLG01000082
[OKLG] human gut metagenome; human gut
13316
13392
+
Pro
GGG
[ENA]
¢þ
>WENV182850826
OKLG01000103
[OKLG] human gut metagenome; human gut
14269
14361
+
Ser
GCT
[ENA]
¢þ
>WENV182850814
OKLG01000012
[OKLG] human gut metagenome; human gut
18234
18328
+
SeC
TCA
[ENA]
¢þ
>WENV182850813
OKLG01000006
[OKLG] human gut metagenome; human gut
19691
19618
-
Gly
CCC
[ENA]
¢þ
>WENV182850822
OKLG01000050
[OKLG] human gut metagenome; human gut
22058
22133
+
Ile2
CAT
[ENA]
¢þ
>WENV182850818
OKLG01000036
[OKLG] human gut metagenome; human gut
26111
26036
-
Trp
CCA
[ENA]
¢þ
>WENV182850815
OKLG01000013
[OKLG] human gut metagenome; human gut
26338
26252
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK