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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[OKLM] human gut metagenome; human gut
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182851423
OKLM01001213
[OKLM] human gut metagenome; human gut
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV182851415
OKLM01000529
[OKLM] human gut metagenome; human gut
58
134
+
Leu
CAA
[ENA]
¢þ
>WENV182851416
OKLM01000553
[OKLM] human gut metagenome; human gut
124
197
+
Arg
CCT
[ENA]
¢þ
>WENV182851405
OKLM01000119
[OKLM] human gut metagenome; human gut
137
211
+
Ile
GAT
[ENA]
¢þ
>WENV182851425
OKLM01001516
[OKLM] human gut metagenome; human gut
159
234
+
Gly
GCC
[ENA]
¢þ
>WENV182851422
OKLM01000954
[OKLM] human gut metagenome; human gut
237
163
-
Gln
CTG
[ENA]
¢þ
>WENV182851420
OKLM01000879
[OKLM] human gut metagenome; human gut
238
156
-
Leu
TAG
[ENA]
¢þ
>WENV182851406
OKLM01000119
[OKLM] human gut metagenome; human gut
253
326
+
Ala
TGC
[ENA]
¢þ
>WENV182851412
OKLM01000391
[OKLM] human gut metagenome; human gut
260
173
-
Ser
GGA
[ENA]
¢þ
>WENV182851426
OKLM01001516
[OKLM] human gut metagenome; human gut
278
351
+
Cys
GCA
[ENA]
¢þ
>WENV182851428
OKLM01001601
[OKLM] human gut metagenome; human gut
288
364
+
Asp
GTC
[ENA]
¢þ
>WENV182851424
OKLM01001472
[OKLM] human gut metagenome; human gut
339
256
-
Leu
CAG
[ENA]
¢þ
>WENV182851421
OKLM01000954
[OKLM] human gut metagenome; human gut
349
276
-
Glu
CTC
[ENA]
¢þ
>WENV182851427
OKLM01001571
[OKLM] human gut metagenome; human gut
377
450
+
Gly
CCC
[ENA]
¢þ
>WENV182851429
OKLM01001601
[OKLM] human gut metagenome; human gut
391
466
+
Thr
TGT
[ENA]
¢þ
>WENV182851419
OKLM01000879
[OKLM] human gut metagenome; human gut
398
325
-
Thr
CGT
[ENA]
¢þ
>WENV182851418
OKLM01000742
[OKLM] human gut metagenome; human gut
577
502
-
His
GTG
[ENA]
¢þ
>WENV182851417
OKLM01000607
[OKLM] human gut metagenome; human gut
674
747
+
Thr
CGT
[ENA]
¢þ
>WENV182851413
OKLM01000438
[OKLM] human gut metagenome; human gut
698
778
+
Leu
TAA
[ENA]
¢þ
>WENV182851414
OKLM01000504
[OKLM] human gut metagenome; human gut
712
636
-
Asp
GTC
[ENA]
¢þ
>WENV182851410
OKLM01000294
[OKLM] human gut metagenome; human gut
904
829
-
Ala
TGC
[ENA]
¢þ
>WENV182851409
OKLM01000258
[OKLM] human gut metagenome; human gut
991
1065
+
Arg
TCT
[ENA]
¢þ
>WENV182851411
OKLM01000385
[OKLM] human gut metagenome; human gut
1043
969
-
Met
CAT
[ENA]
¢þ
>WENV182851401
OKLM01000061
[OKLM] human gut metagenome; human gut
1128
1214
+
Ser
TGA
[ENA]
¢þ
>WENV182851408
OKLM01000238
[OKLM] human gut metagenome; human gut
1555
1481
-
Arg
ACG
[ENA]
¢þ
>WENV182851402
OKLM01000068
[OKLM] human gut metagenome; human gut
1580
1507
-
Lys
TTT
[ENA]
¢þ
>WENV182851407
OKLM01000129
[OKLM] human gut metagenome; human gut
1631
1705
+
Val
TAC
[ENA]
¢þ
>WENV182851394
OKLM01000016
[OKLM] human gut metagenome; human gut
1718
1805
+
Ser
GCT
[ENA]
¢þ
>WENV182851395
OKLM01000032
[OKLM] human gut metagenome; human gut
1741
1667
-
Pro
CGG
[ENA]
¢þ
>WENV182851403
OKLM01000102
[OKLM] human gut metagenome; human gut
1778
1704
-
Ile2
CAT
[ENA]
¢þ
>WENV182851404
OKLM01000114
[OKLM] human gut metagenome; human gut
1983
2071
+
Leu
GAG
[ENA]
¢þ
>WENV182851400
OKLM01000060
[OKLM] human gut metagenome; human gut
2058
2132
+
Lys
CTT
[ENA]
¢þ
>WENV182851399
OKLM01000056
[OKLM] human gut metagenome; human gut
2258
2183
-
Gly
GCC
[ENA]
¢þ
>WENV182851398
OKLM01000056
[OKLM] human gut metagenome; human gut
2362
2289
-
Val
CAC
[ENA]
¢þ
>WENV182851397
OKLM01000056
[OKLM] human gut metagenome; human gut
2482
2410
-
Val
GAC
[ENA]
¢þ
>WENV182851396
OKLM01000056
[OKLM] human gut metagenome; human gut
2594
2523
-
Cys
GCA
[ENA]
¢þ
>WENV182851393
OKLM01000001
[OKLM] human gut metagenome; human gut
3452
3526
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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