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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKLQ] human gut metagenome; human gut
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182851641
OKLQ01003134
[OKLQ] human gut metagenome; human gut
3
90
+
Ser
TGA
[ENA]
¢þ
>WENV182851622
OKLQ01000682
[OKLQ] human gut metagenome; human gut
23
99
+
Pro
CGG
[ENA]
¢þ
>WENV182851651
OKLQ01006976
[OKLQ] human gut metagenome; human gut
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV182851648
OKLQ01004821
[OKLQ] human gut metagenome; human gut
99
24
-
Asn
GTT
[ENA]
¢þ
>WENV182851617
OKLQ01000162
[OKLQ] human gut metagenome; human gut
102
27
-
Gly
GCC
[ENA]
¢þ
>WENV182851644
OKLQ01003737
[OKLQ] human gut metagenome; human gut
121
45
-
Asp
GTC
[ENA]
¢þ
>WENV182851616
OKLQ01000158
[OKLQ] human gut metagenome; human gut
144
218
+
Arg
CCT
[ENA]
¢þ
>WENV182851627
OKLQ01001250
[OKLQ] human gut metagenome; human gut
153
79
-
Gln
TTG
[ENA]
¢þ
>WENV182851614
OKLQ01000093
[OKLQ] human gut metagenome; human gut
169
93
-
Arg
TCT
[ENA]
¢þ
>WENV182851626
OKLQ01001250
[OKLQ] human gut metagenome; human gut
261
177
-
Leu
TAG
[ENA]
¢þ
>WENV182851625
OKLQ01001250
[OKLQ] human gut metagenome; human gut
346
270
-
Met
CAT
[ENA]
¢þ
>WENV182851628
OKLQ01001398
[OKLQ] human gut metagenome; human gut
346
433
+
Ser
GGA
[ENA]
¢þ
>WENV182851631
OKLQ01002360
[OKLQ] human gut metagenome; human gut
362
437
+
Gly
GCC
[ENA]
¢þ
>WENV182851635
OKLQ01002666
[OKLQ] human gut metagenome; human gut
424
500
+
Arg
TCT
[ENA]
¢þ
>WENV182851639
OKLQ01002918
[OKLQ] human gut metagenome; human gut
450
536
+
Leu
GAG
[ENA]
¢þ
>WENV182851632
OKLQ01002360
[OKLQ] human gut metagenome; human gut
491
564
+
Cys
GCA
[ENA]
¢þ
>WENV182851640
OKLQ01002960
[OKLQ] human gut metagenome; human gut
555
631
+
Asp
GTC
[ENA]
¢þ
>WENV182851633
OKLQ01002360
[OKLQ] human gut metagenome; human gut
578
664
+
Leu
TAA
[ENA]
¢þ
>WENV182851650
OKLQ01006003
[OKLQ] human gut metagenome; human gut
601
526
-
Gly
GCC
[ENA]
¢þ
>WENV182851649
OKLQ01005609
[OKLQ] human gut metagenome; human gut
621
532
-
Ser
CGA
[ENA]
¢þ
>WENV182851636
OKLQ01002804
[OKLQ] human gut metagenome; human gut
650
725
+
Ile2
CAT
[ENA]
¢þ
>WENV182851630
OKLQ01001755
[OKLQ] human gut metagenome; human gut
674
585
-
Ser
CGA
[ENA]
¢þ
>WENV182851637
OKLQ01002804
[OKLQ] human gut metagenome; human gut
733
809
+
Arg
TCG
[ENA]
¢þ
>WENV182851647
OKLQ01004736
[OKLQ] human gut metagenome; human gut
773
698
-
Ile2
CAT
[ENA]
¢þ
>WENV182851620
OKLQ01000430
[OKLQ] human gut metagenome; human gut
793
717
-
fMet
CAT
[ENA]
¢þ
>WENV182851646
OKLQ01004413
[OKLQ] human gut metagenome; human gut
799
705
-
SeC
TCA
[ENA]
¢þ
>WENV182851638
OKLQ01002804
[OKLQ] human gut metagenome; human gut
823
899
+
Arg
TCT
[ENA]
¢þ
>WENV182851645
OKLQ01003921
[OKLQ] human gut metagenome; human gut
836
912
+
Val
GAC
[ENA]
¢þ
>WENV182851615
OKLQ01000149
[OKLQ] human gut metagenome; human gut
928
853
-
Thr
CGT
[ENA]
¢þ
>WENV182851643
OKLQ01003361
[OKLQ] human gut metagenome; human gut
970
894
-
Asp
GTC
[ENA]
¢þ
>WENV182851642
OKLQ01003305
[OKLQ] human gut metagenome; human gut
1046
970
-
Val
GAC
[ENA]
¢þ
>WENV182851629
OKLQ01001529
[OKLQ] human gut metagenome; human gut
1141
1217
+
Arg
TCT
[ENA]
¢þ
>WENV182851619
OKLQ01000370
[OKLQ] human gut metagenome; human gut
1164
1239
+
Ala
GGC
[ENA]
¢þ
>WENV182851634
OKLQ01002550
[OKLQ] human gut metagenome; human gut
1191
1267
+
Pro
GGG
[ENA]
¢þ
>WENV182851624
OKLQ01000991
[OKLQ] human gut metagenome; human gut
1452
1527
+
Asn
GTT
[ENA]
¢þ
>WENV182851613
OKLQ01000044
[OKLQ] human gut metagenome; human gut
1493
1568
+
Phe
GAA
[ENA]
¢þ
>WENV182851623
OKLQ01000777
[OKLQ] human gut metagenome; human gut
2209
2301
+
Ser
GCT
[ENA]
¢þ
>WENV182851621
OKLQ01000501
[OKLQ] human gut metagenome; human gut
2323
2248
-
Asn
GTT
[ENA]
¢þ
>WENV182851618
OKLQ01000277
[OKLQ] human gut metagenome; human gut
2669
2594
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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