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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKLU] human gut metagenome; human gut
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182852039
OKLU01002146
[OKLU] human gut metagenome; human gut
103
178
+
Lys
TTT
[ENA]
¢þ
>WENV182852037
OKLU01001141
[OKLU] human gut metagenome; human gut
149
223
+
Arg
CCT
[ENA]
¢þ
>WENV182852043
OKLU01002700
[OKLU] human gut metagenome; human gut
171
258
+
Ser
TGA
[ENA]
¢þ
>WENV182852038
OKLU01001144
[OKLU] human gut metagenome; human gut
172
96
-
fMet
CAT
[ENA]
¢þ
>WENV182852031
OKLU01000245
[OKLU] human gut metagenome; human gut
194
110
-
Tyr
GTA
[ENA]
¢þ
>WENV182852030
OKLU01000245
[OKLU] human gut metagenome; human gut
280
205
-
Thr
TGT
[ENA]
¢þ
>WENV182852041
OKLU01002581
[OKLU] human gut metagenome; human gut
343
268
-
Ile2
CAT
[ENA]
¢þ
>WENV182852040
OKLU01002510
[OKLU] human gut metagenome; human gut
371
455
+
Leu
CAA
[ENA]
¢þ
>WENV182852042
OKLU01002606
[OKLU] human gut metagenome; human gut
409
333
-
Pro
GGG
[ENA]
¢þ
>WENV182852025
OKLU01000179
[OKLU] human gut metagenome; human gut
548
635
+
Ser
GGA
[ENA]
¢þ
>WENV182852036
OKLU01001134
[OKLU] human gut metagenome; human gut
610
685
+
Phe
GAA
[ENA]
¢þ
>WENV182852035
OKLU01000739
[OKLU] human gut metagenome; human gut
650
739
+
Ser
CGA
[ENA]
¢þ
>WENV182852027
OKLU01000232
[OKLU] human gut metagenome; human gut
683
597
-
Leu
CAG
[ENA]
¢þ
>WENV182852033
OKLU01000296
[OKLU] human gut metagenome; human gut
747
671
-
Val
GAC
[ENA]
¢þ
>WENV182852032
OKLU01000296
[OKLU] human gut metagenome; human gut
827
751
-
Val
GAC
[ENA]
¢þ
>WENV182852029
OKLU01000243
[OKLU] human gut metagenome; human gut
941
865
-
Arg
ACG
[ENA]
¢þ
>WENV182852028
OKLU01000243
[OKLU] human gut metagenome; human gut
1038
946
-
Ser
GCT
[ENA]
¢þ
>WENV182852034
OKLU01000699
[OKLU] human gut metagenome; human gut
1703
1778
+
Gly
GCC
[ENA]
¢þ
>WENV182852024
OKLU01000166
[OKLU] human gut metagenome; human gut
2019
1944
-
Asn
GTT
[ENA]
¢þ
>WENV182852016
OKLU01000048
[OKLU] human gut metagenome; human gut
2527
2451
-
Arg
TCT
[ENA]
¢þ
>WENV182852020
OKLU01000059
[OKLU] human gut metagenome; human gut
2938
2862
-
Pro
TGG
[ENA]
¢þ
>WENV182852019
OKLU01000059
[OKLU] human gut metagenome; human gut
3067
2981
-
Leu
CAG
[ENA]
¢þ
>WENV182852018
OKLU01000059
[OKLU] human gut metagenome; human gut
3165
3090
-
His
GTG
[ENA]
¢þ
>WENV182852026
OKLU01000195
[OKLU] human gut metagenome; human gut
3189
3113
-
Asp
GTC
[ENA]
¢þ
>WENV182852017
OKLU01000059
[OKLU] human gut metagenome; human gut
3297
3221
-
Arg
CCG
[ENA]
¢þ
>WENV182852021
OKLU01000077
[OKLU] human gut metagenome; human gut
3388
3313
-
Glu
TTC
[ENA]
¢þ
>WENV182852015
OKLU01000002
[OKLU] human gut metagenome; human gut
3477
3553
+
Pro
CGG
[ENA]
¢þ
>WENV182852022
OKLU01000121
[OKLU] human gut metagenome; human gut
3590
3664
+
Val
TAC
[ENA]
¢þ
>WENV182852023
OKLU01000121
[OKLU] human gut metagenome; human gut
3674
3748
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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